Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS21180 and DDA3937_RS21185 are separated by 47 nucleotides DDA3937_RS21185 and DDA3937_RS21190 are separated by 15 nucleotides DDA3937_RS21190 and DDA3937_RS21195 are separated by 34 nucleotides
DDA3937_RS21180: DDA3937_RS21180 - MFS transporter, at 4,821,174 to 4,822,436
_RS21180
DDA3937_RS21185: DDA3937_RS21185 - 2OG-Fe dioxygenase family protein, at 4,822,484 to 4,823,203
_RS21185
DDA3937_RS21190: DDA3937_RS21190 - ATP-grasp domain-containing protein, at 4,823,219 to 4,824,625
_RS21190
DDA3937_RS21195: DDA3937_RS21195 - 4Fe-4S cluster-binding domain-containing protein, at 4,824,660 to 4,825,820
_RS21195
Position (kb) 4823
4824
4825 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4822.312 kb on + strand at 4822.312 kb on + strand at 4822.313 kb on - strand at 4822.313 kb on - strand at 4822.313 kb on - strand at 4822.313 kb on - strand at 4822.313 kb on - strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.318 kb on + strand at 4822.319 kb on - strand at 4822.319 kb on - strand at 4822.394 kb on + strand at 4822.395 kb on - strand at 4822.395 kb on - strand at 4822.445 kb on - strand at 4822.452 kb on + strand at 4822.452 kb on + strand at 4822.452 kb on + strand at 4822.452 kb on + strand at 4822.452 kb on + strand at 4822.453 kb on - strand at 4822.454 kb on + strand at 4822.485 kb on + strand at 4822.485 kb on + strand at 4822.486 kb on - strand at 4822.486 kb on - strand at 4822.569 kb on + strand, within DDA3937_RS21185 at 4822.570 kb on - strand, within DDA3937_RS21185 at 4822.570 kb on - strand, within DDA3937_RS21185 at 4822.796 kb on - strand, within DDA3937_RS21185 at 4822.806 kb on + strand, within DDA3937_RS21185 at 4822.806 kb on + strand, within DDA3937_RS21185 at 4822.807 kb on - strand, within DDA3937_RS21185 at 4822.807 kb on - strand, within DDA3937_RS21185 at 4822.861 kb on + strand, within DDA3937_RS21185 at 4822.861 kb on + strand, within DDA3937_RS21185 at 4822.862 kb on - strand, within DDA3937_RS21185 at 4822.862 kb on - strand, within DDA3937_RS21185 at 4822.862 kb on - strand, within DDA3937_RS21185 at 4822.868 kb on + strand, within DDA3937_RS21185 at 4822.869 kb on - strand, within DDA3937_RS21185 at 4822.885 kb on + strand, within DDA3937_RS21185 at 4822.902 kb on + strand, within DDA3937_RS21185 at 4822.902 kb on + strand, within DDA3937_RS21185 at 4822.903 kb on - strand, within DDA3937_RS21185 at 4822.927 kb on + strand, within DDA3937_RS21185 at 4822.928 kb on - strand, within DDA3937_RS21185 at 4822.928 kb on - strand, within DDA3937_RS21185 at 4822.928 kb on - strand, within DDA3937_RS21185 at 4822.929 kb on + strand, within DDA3937_RS21185 at 4822.929 kb on + strand, within DDA3937_RS21185 at 4822.930 kb on - strand, within DDA3937_RS21185 at 4822.941 kb on + strand, within DDA3937_RS21185 at 4822.941 kb on + strand, within DDA3937_RS21185 at 4822.942 kb on - strand, within DDA3937_RS21185 at 4822.942 kb on - strand, within DDA3937_RS21185 at 4823.037 kb on + strand, within DDA3937_RS21185 at 4823.037 kb on + strand, within DDA3937_RS21185 at 4823.037 kb on + strand, within DDA3937_RS21185 at 4823.037 kb on + strand, within DDA3937_RS21185 at 4823.038 kb on - strand, within DDA3937_RS21185 at 4823.069 kb on - strand, within DDA3937_RS21185 at 4823.146 kb on - strand at 4823.170 kb on + strand at 4823.170 kb on + strand at 4823.170 kb on + strand at 4823.185 kb on + strand at 4823.185 kb on + strand at 4823.225 kb on + strand at 4823.226 kb on - strand at 4823.314 kb on - strand at 4823.367 kb on + strand, within DDA3937_RS21190 at 4823.367 kb on + strand, within DDA3937_RS21190 at 4823.367 kb on + strand, within DDA3937_RS21190 at 4823.367 kb on + strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.368 kb on - strand, within DDA3937_RS21190 at 4823.394 kb on + strand, within DDA3937_RS21190 at 4823.395 kb on - strand, within DDA3937_RS21190 at 4823.476 kb on - strand, within DDA3937_RS21190 at 4823.595 kb on + strand, within DDA3937_RS21190 at 4823.595 kb on + strand, within DDA3937_RS21190 at 4823.595 kb on + strand, within DDA3937_RS21190 at 4823.595 kb on + strand, within DDA3937_RS21190 at 4823.595 kb on + strand, within DDA3937_RS21190 at 4823.595 kb on + strand, within DDA3937_RS21190 at 4823.595 kb on + strand, within DDA3937_RS21190 at 4823.595 kb on + strand, within DDA3937_RS21190 at 4823.595 kb on + strand, within DDA3937_RS21190 at 4823.596 kb on - strand, within DDA3937_RS21190 at 4823.596 kb on - strand, within DDA3937_RS21190 at 4823.596 kb on - strand, within DDA3937_RS21190 at 4823.596 kb on - strand, within DDA3937_RS21190 at 4823.605 kb on - strand at 4823.646 kb on + strand, within DDA3937_RS21190 at 4823.646 kb on + strand, within DDA3937_RS21190 at 4823.646 kb on + strand, within DDA3937_RS21190 at 4823.646 kb on + strand, within DDA3937_RS21190 at 4823.647 kb on - strand, within DDA3937_RS21190 at 4823.647 kb on - strand, within DDA3937_RS21190 at 4823.647 kb on - strand, within DDA3937_RS21190 at 4823.647 kb on - strand, within DDA3937_RS21190 at 4823.647 kb on - strand, within DDA3937_RS21190 at 4823.647 kb on - strand, within DDA3937_RS21190 at 4823.647 kb on - strand, within DDA3937_RS21190 at 4823.701 kb on + strand, within DDA3937_RS21190 at 4823.727 kb on + strand, within DDA3937_RS21190 at 4823.728 kb on - strand, within DDA3937_RS21190 at 4823.764 kb on - strand, within DDA3937_RS21190 at 4823.869 kb on + strand, within DDA3937_RS21190 at 4823.870 kb on - strand, within DDA3937_RS21190 at 4823.903 kb on + strand, within DDA3937_RS21190 at 4823.936 kb on - strand, within DDA3937_RS21190 at 4823.936 kb on - strand, within DDA3937_RS21190 at 4823.937 kb on + strand, within DDA3937_RS21190 at 4823.937 kb on + strand, within DDA3937_RS21190 at 4823.937 kb on + strand, within DDA3937_RS21190 at 4823.937 kb on + strand, within DDA3937_RS21190 at 4823.937 kb on + strand, within DDA3937_RS21190 at 4823.938 kb on - strand, within DDA3937_RS21190 at 4823.938 kb on - strand, within DDA3937_RS21190 at 4823.938 kb on - strand, within DDA3937_RS21190 at 4823.970 kb on + strand, within DDA3937_RS21190 at 4823.970 kb on + strand, within DDA3937_RS21190 at 4823.971 kb on - strand, within DDA3937_RS21190 at 4823.971 kb on - strand, within DDA3937_RS21190 at 4823.971 kb on - strand, within DDA3937_RS21190 at 4823.971 kb on - strand, within DDA3937_RS21190 at 4824.067 kb on - strand, within DDA3937_RS21190 at 4824.067 kb on - strand, within DDA3937_RS21190 at 4824.070 kb on - strand, within DDA3937_RS21190 at 4824.070 kb on - strand, within DDA3937_RS21190 at 4824.070 kb on - strand, within DDA3937_RS21190 at 4824.070 kb on - strand, within DDA3937_RS21190 at 4824.204 kb on + strand, within DDA3937_RS21190 at 4824.204 kb on + strand, within DDA3937_RS21190 at 4824.205 kb on - strand, within DDA3937_RS21190 at 4824.205 kb on - strand, within DDA3937_RS21190 at 4824.205 kb on - strand, within DDA3937_RS21190 at 4824.205 kb on - strand, within DDA3937_RS21190 at 4824.209 kb on + strand, within DDA3937_RS21190 at 4824.257 kb on - strand, within DDA3937_RS21190 at 4824.257 kb on - strand, within DDA3937_RS21190 at 4824.257 kb on - strand, within DDA3937_RS21190 at 4824.257 kb on - strand, within DDA3937_RS21190 at 4824.259 kb on + strand, within DDA3937_RS21190 at 4824.259 kb on + strand, within DDA3937_RS21190 at 4824.259 kb on + strand, within DDA3937_RS21190 at 4824.259 kb on + strand, within DDA3937_RS21190 at 4824.263 kb on - strand, within DDA3937_RS21190 at 4824.291 kb on + strand, within DDA3937_RS21190 at 4824.564 kb on + strand at 4824.568 kb on + strand at 4824.569 kb on - strand at 4824.569 kb on - strand at 4824.569 kb on - strand at 4824.569 kb on - strand at 4824.571 kb on - strand at 4824.593 kb on - strand at 4824.610 kb on + strand at 4824.610 kb on + strand at 4824.661 kb on + strand at 4824.661 kb on + strand at 4824.661 kb on + strand at 4824.661 kb on + strand at 4824.662 kb on - strand at 4824.662 kb on - strand at 4824.805 kb on + strand, within DDA3937_RS21195 at 4824.806 kb on - strand, within DDA3937_RS21195 at 4824.806 kb on - strand, within DDA3937_RS21195 at 4824.822 kb on - strand, within DDA3937_RS21195 at 4824.883 kb on + strand, within DDA3937_RS21195 at 4824.921 kb on + strand, within DDA3937_RS21195 at 4824.926 kb on - strand, within DDA3937_RS21195 at 4824.926 kb on - strand, within DDA3937_RS21195 at 4824.926 kb on - strand, within DDA3937_RS21195 at 4824.950 kb on - strand, within DDA3937_RS21195 at 4824.950 kb on - strand, within DDA3937_RS21195 at 4824.951 kb on + strand, within DDA3937_RS21195 at 4824.951 kb on + strand, within DDA3937_RS21195 at 4824.951 kb on + strand at 4825.053 kb on + strand, within DDA3937_RS21195 at 4825.053 kb on + strand, within DDA3937_RS21195 at 4825.157 kb on + strand, within DDA3937_RS21195 at 4825.158 kb on - strand, within DDA3937_RS21195 at 4825.169 kb on + strand, within DDA3937_RS21195 at 4825.193 kb on + strand, within DDA3937_RS21195 at 4825.290 kb on - strand, within DDA3937_RS21195 at 4825.290 kb on - strand, within DDA3937_RS21195 at 4825.421 kb on + strand, within DDA3937_RS21195 at 4825.422 kb on - strand, within DDA3937_RS21195 at 4825.428 kb on - strand, within DDA3937_RS21195 at 4825.428 kb on - strand, within DDA3937_RS21195 at 4825.624 kb on + strand, within DDA3937_RS21195
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,822,312 + -0.6 4,822,312 + +0.9 4,822,313 - -0.7 4,822,313 - -0.8 4,822,313 - -0.1 4,822,313 - -1.5 4,822,313 - -0.3 4,822,318 + +0.4 4,822,318 + +0.1 4,822,318 + -2.0 4,822,318 + -0.2 4,822,318 + +0.3 4,822,318 + -2.5 4,822,318 + -0.4 4,822,319 - +0.7 4,822,319 - -1.2 4,822,394 + -2.5 4,822,395 - -3.4 4,822,395 - -1.2 4,822,445 - -2.4 4,822,452 + -0.5 4,822,452 + -0.5 4,822,452 + -0.1 4,822,452 + +0.6 4,822,452 + +0.3 4,822,453 - -0.2 4,822,454 + -1.4 4,822,485 + +0.1 4,822,485 + +0.3 4,822,486 - -1.4 4,822,486 - -0.1 4,822,569 + DDA3937_RS21185 0.12 -0.4 4,822,570 - DDA3937_RS21185 0.12 -1.0 4,822,570 - DDA3937_RS21185 0.12 +1.6 4,822,796 - DDA3937_RS21185 0.43 +1.2 4,822,806 + DDA3937_RS21185 0.45 -0.1 4,822,806 + DDA3937_RS21185 0.45 +0.3 4,822,807 - DDA3937_RS21185 0.45 -0.6 4,822,807 - DDA3937_RS21185 0.45 +0.3 4,822,861 + DDA3937_RS21185 0.52 +0.1 4,822,861 + DDA3937_RS21185 0.52 -3.0 4,822,862 - DDA3937_RS21185 0.53 -0.1 4,822,862 - DDA3937_RS21185 0.53 -0.2 4,822,862 - DDA3937_RS21185 0.53 -0.7 4,822,868 + DDA3937_RS21185 0.53 -0.0 4,822,869 - DDA3937_RS21185 0.53 -1.0 4,822,885 + DDA3937_RS21185 0.56 -1.4 4,822,902 + DDA3937_RS21185 0.58 -1.1 4,822,902 + DDA3937_RS21185 0.58 -1.0 4,822,903 - DDA3937_RS21185 0.58 +0.7 4,822,927 + DDA3937_RS21185 0.62 +0.8 4,822,928 - DDA3937_RS21185 0.62 +0.0 4,822,928 - DDA3937_RS21185 0.62 -1.8 4,822,928 - DDA3937_RS21185 0.62 -0.1 4,822,929 + DDA3937_RS21185 0.62 -1.5 4,822,929 + DDA3937_RS21185 0.62 -0.6 4,822,930 - DDA3937_RS21185 0.62 +0.8 4,822,941 + DDA3937_RS21185 0.63 +0.1 4,822,941 + DDA3937_RS21185 0.63 -1.1 4,822,942 - DDA3937_RS21185 0.64 +1.6 4,822,942 - DDA3937_RS21185 0.64 -0.6 4,823,037 + DDA3937_RS21185 0.77 +0.6 4,823,037 + DDA3937_RS21185 0.77 -1.8 4,823,037 + DDA3937_RS21185 0.77 +1.9 4,823,037 + DDA3937_RS21185 0.77 +1.6 4,823,038 - DDA3937_RS21185 0.77 -0.1 4,823,069 - DDA3937_RS21185 0.81 -0.6 4,823,146 - -0.3 4,823,170 + +0.3 4,823,170 + -0.5 4,823,170 + -1.2 4,823,185 + +0.5 4,823,185 + -0.5 4,823,225 + -0.4 4,823,226 - -0.5 4,823,314 - -0.1 4,823,367 + DDA3937_RS21190 0.11 +0.6 4,823,367 + DDA3937_RS21190 0.11 -1.0 4,823,367 + DDA3937_RS21190 0.11 -0.0 4,823,367 + DDA3937_RS21190 0.11 +1.2 4,823,368 - DDA3937_RS21190 0.11 -0.5 4,823,368 - DDA3937_RS21190 0.11 +0.6 4,823,368 - DDA3937_RS21190 0.11 +1.0 4,823,368 - DDA3937_RS21190 0.11 -0.5 4,823,368 - DDA3937_RS21190 0.11 +0.3 4,823,368 - DDA3937_RS21190 0.11 +1.0 4,823,394 + DDA3937_RS21190 0.12 +0.2 4,823,395 - DDA3937_RS21190 0.13 -0.1 4,823,476 - DDA3937_RS21190 0.18 -1.2 4,823,595 + DDA3937_RS21190 0.27 +0.3 4,823,595 + DDA3937_RS21190 0.27 -0.1 4,823,595 + DDA3937_RS21190 0.27 -0.7 4,823,595 + DDA3937_RS21190 0.27 -0.5 4,823,595 + DDA3937_RS21190 0.27 +2.6 4,823,595 + DDA3937_RS21190 0.27 -0.5 4,823,595 + DDA3937_RS21190 0.27 +0.1 4,823,595 + DDA3937_RS21190 0.27 -0.2 4,823,595 + DDA3937_RS21190 0.27 +0.3 4,823,596 - DDA3937_RS21190 0.27 -2.4 4,823,596 - DDA3937_RS21190 0.27 +0.6 4,823,596 - DDA3937_RS21190 0.27 +0.6 4,823,596 - DDA3937_RS21190 0.27 -0.8 4,823,605 - +3.3 4,823,646 + DDA3937_RS21190 0.30 -0.2 4,823,646 + DDA3937_RS21190 0.30 -0.3 4,823,646 + DDA3937_RS21190 0.30 -1.2 4,823,646 + DDA3937_RS21190 0.30 -1.2 4,823,647 - DDA3937_RS21190 0.30 -1.2 4,823,647 - DDA3937_RS21190 0.30 -0.1 4,823,647 - DDA3937_RS21190 0.30 -1.2 4,823,647 - DDA3937_RS21190 0.30 -1.4 4,823,647 - DDA3937_RS21190 0.30 -0.5 4,823,647 - DDA3937_RS21190 0.30 -1.0 4,823,647 - DDA3937_RS21190 0.30 -0.2 4,823,701 + DDA3937_RS21190 0.34 -1.2 4,823,727 + DDA3937_RS21190 0.36 -1.7 4,823,728 - DDA3937_RS21190 0.36 +0.2 4,823,764 - DDA3937_RS21190 0.39 -1.7 4,823,869 + DDA3937_RS21190 0.46 +0.2 4,823,870 - DDA3937_RS21190 0.46 -0.4 4,823,903 + DDA3937_RS21190 0.49 -1.0 4,823,936 - DDA3937_RS21190 0.51 -0.2 4,823,936 - DDA3937_RS21190 0.51 +0.5 4,823,937 + DDA3937_RS21190 0.51 +2.3 4,823,937 + DDA3937_RS21190 0.51 -0.5 4,823,937 + DDA3937_RS21190 0.51 +0.7 4,823,937 + DDA3937_RS21190 0.51 -1.3 4,823,937 + DDA3937_RS21190 0.51 -1.7 4,823,938 - DDA3937_RS21190 0.51 +0.4 4,823,938 - DDA3937_RS21190 0.51 +1.3 4,823,938 - DDA3937_RS21190 0.51 +0.0 4,823,970 + DDA3937_RS21190 0.53 -1.5 4,823,970 + DDA3937_RS21190 0.53 +1.5 4,823,971 - DDA3937_RS21190 0.53 +1.9 4,823,971 - DDA3937_RS21190 0.53 -2.0 4,823,971 - DDA3937_RS21190 0.53 +0.1 4,823,971 - DDA3937_RS21190 0.53 -1.6 4,824,067 - DDA3937_RS21190 0.60 -0.0 4,824,067 - DDA3937_RS21190 0.60 +0.1 4,824,070 - DDA3937_RS21190 0.60 -0.7 4,824,070 - DDA3937_RS21190 0.60 -2.0 4,824,070 - DDA3937_RS21190 0.60 +1.3 4,824,070 - DDA3937_RS21190 0.60 -1.0 4,824,204 + DDA3937_RS21190 0.70 -0.5 4,824,204 + DDA3937_RS21190 0.70 -2.2 4,824,205 - DDA3937_RS21190 0.70 +0.2 4,824,205 - DDA3937_RS21190 0.70 -0.1 4,824,205 - DDA3937_RS21190 0.70 -0.7 4,824,205 - DDA3937_RS21190 0.70 -0.5 4,824,209 + DDA3937_RS21190 0.70 -0.8 4,824,257 - DDA3937_RS21190 0.74 +0.5 4,824,257 - DDA3937_RS21190 0.74 +0.2 4,824,257 - DDA3937_RS21190 0.74 -1.8 4,824,257 - DDA3937_RS21190 0.74 +1.4 4,824,259 + DDA3937_RS21190 0.74 +0.6 4,824,259 + DDA3937_RS21190 0.74 +0.2 4,824,259 + DDA3937_RS21190 0.74 +0.9 4,824,259 + DDA3937_RS21190 0.74 -0.4 4,824,263 - DDA3937_RS21190 0.74 -0.4 4,824,291 + DDA3937_RS21190 0.76 -0.9 4,824,564 + -0.5 4,824,568 + -1.2 4,824,569 - -1.3 4,824,569 - -0.4 4,824,569 - -2.1 4,824,569 - +0.7 4,824,571 - +0.3 4,824,593 - +0.0 4,824,610 + -0.3 4,824,610 + -0.5 4,824,661 + -1.5 4,824,661 + -0.7 4,824,661 + -1.4 4,824,661 + -1.0 4,824,662 - +0.5 4,824,662 - +0.1 4,824,805 + DDA3937_RS21195 0.12 +0.3 4,824,806 - DDA3937_RS21195 0.13 -0.5 4,824,806 - DDA3937_RS21195 0.13 +0.1 4,824,822 - DDA3937_RS21195 0.14 -0.9 4,824,883 + DDA3937_RS21195 0.19 -0.1 4,824,921 + DDA3937_RS21195 0.22 +0.2 4,824,926 - DDA3937_RS21195 0.23 -1.4 4,824,926 - DDA3937_RS21195 0.23 -0.2 4,824,926 - DDA3937_RS21195 0.23 +0.1 4,824,950 - DDA3937_RS21195 0.25 -1.8 4,824,950 - DDA3937_RS21195 0.25 +1.4 4,824,951 + DDA3937_RS21195 0.25 -0.1 4,824,951 + DDA3937_RS21195 0.25 +0.5 4,824,951 + -0.7 4,825,053 + DDA3937_RS21195 0.34 -3.0 4,825,053 + DDA3937_RS21195 0.34 -0.3 4,825,157 + DDA3937_RS21195 0.43 +0.0 4,825,158 - DDA3937_RS21195 0.43 -1.2 4,825,169 + DDA3937_RS21195 0.44 -0.1 4,825,193 + DDA3937_RS21195 0.46 +0.6 4,825,290 - DDA3937_RS21195 0.54 +0.3 4,825,290 - DDA3937_RS21195 0.54 -0.5 4,825,421 + DDA3937_RS21195 0.66 -1.1 4,825,422 - DDA3937_RS21195 0.66 -0.2 4,825,428 - DDA3937_RS21195 0.66 +0.3 4,825,428 - DDA3937_RS21195 0.66 -2.6 4,825,624 + DDA3937_RS21195 0.83 -2.6
Or see this region's nucleotide sequence