Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20165

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS20160 and DDA3937_RS20165 are separated by 24 nucleotidesDDA3937_RS20165 and DDA3937_RS20170 are separated by 17 nucleotides DDA3937_RS20160: DDA3937_RS20160 - branched-chain-amino-acid transaminase, at 4,595,039 to 4,595,965 _RS20160 DDA3937_RS20165: DDA3937_RS20165 - acetolactate synthase 2 small subunit, at 4,595,990 to 4,596,247 _RS20165 DDA3937_RS20170: DDA3937_RS20170 - acetolactate synthase 2 catalytic subunit, at 4,596,265 to 4,597,911 _RS20170 Position (kb) 4595 4596 4597Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4595.114 kb on + strandat 4595.114 kb on + strandat 4595.115 kb on - strandat 4595.226 kb on + strand, within DDA3937_RS20160at 4595.309 kb on - strand, within DDA3937_RS20160at 4595.309 kb on - strand, within DDA3937_RS20160at 4595.309 kb on - strand, within DDA3937_RS20160at 4595.360 kb on + strand, within DDA3937_RS20160at 4595.397 kb on + strand, within DDA3937_RS20160at 4595.398 kb on - strand, within DDA3937_RS20160at 4595.398 kb on - strand, within DDA3937_RS20160at 4595.398 kb on - strand, within DDA3937_RS20160at 4595.475 kb on + strand, within DDA3937_RS20160at 4595.475 kb on + strand, within DDA3937_RS20160at 4595.475 kb on + strand, within DDA3937_RS20160at 4595.475 kb on + strand, within DDA3937_RS20160at 4595.475 kb on + strand, within DDA3937_RS20160at 4595.475 kb on + strand, within DDA3937_RS20160at 4595.475 kb on + strand, within DDA3937_RS20160at 4595.476 kb on - strand, within DDA3937_RS20160at 4595.476 kb on - strand, within DDA3937_RS20160at 4595.476 kb on - strand, within DDA3937_RS20160at 4595.476 kb on - strand, within DDA3937_RS20160at 4595.476 kb on - strand, within DDA3937_RS20160at 4595.480 kb on - strand, within DDA3937_RS20160at 4595.491 kb on + strand, within DDA3937_RS20160at 4595.510 kb on - strand, within DDA3937_RS20160at 4595.510 kb on - strand, within DDA3937_RS20160at 4595.580 kb on + strand, within DDA3937_RS20160at 4595.580 kb on + strand, within DDA3937_RS20160at 4595.580 kb on + strand, within DDA3937_RS20160at 4595.581 kb on - strand, within DDA3937_RS20160at 4595.621 kb on - strand, within DDA3937_RS20160at 4595.622 kb on + strand, within DDA3937_RS20160at 4595.623 kb on - strand, within DDA3937_RS20160at 4595.651 kb on + strand, within DDA3937_RS20160at 4595.651 kb on + strand, within DDA3937_RS20160at 4595.651 kb on + strand, within DDA3937_RS20160at 4595.651 kb on + strand, within DDA3937_RS20160at 4595.651 kb on + strand, within DDA3937_RS20160at 4595.651 kb on + strand, within DDA3937_RS20160at 4595.651 kb on + strand, within DDA3937_RS20160at 4595.652 kb on - strand, within DDA3937_RS20160at 4595.652 kb on - strand, within DDA3937_RS20160at 4595.652 kb on - strand, within DDA3937_RS20160at 4595.652 kb on - strand, within DDA3937_RS20160at 4595.652 kb on - strand, within DDA3937_RS20160at 4595.652 kb on - strand, within DDA3937_RS20160at 4595.652 kb on - strand, within DDA3937_RS20160at 4595.652 kb on - strand, within DDA3937_RS20160at 4595.652 kb on - strand, within DDA3937_RS20160at 4595.652 kb on - strand, within DDA3937_RS20160at 4595.666 kb on + strand, within DDA3937_RS20160at 4595.666 kb on + strand, within DDA3937_RS20160at 4595.666 kb on + strand, within DDA3937_RS20160at 4595.680 kb on + strand, within DDA3937_RS20160at 4595.680 kb on + strand, within DDA3937_RS20160at 4595.682 kb on + strand, within DDA3937_RS20160at 4595.682 kb on + strand, within DDA3937_RS20160at 4595.683 kb on - strand, within DDA3937_RS20160at 4595.683 kb on - strand, within DDA3937_RS20160at 4595.749 kb on - strand, within DDA3937_RS20160at 4595.761 kb on + strand, within DDA3937_RS20160at 4595.761 kb on + strand, within DDA3937_RS20160at 4595.761 kb on + strand, within DDA3937_RS20160at 4595.761 kb on + strand, within DDA3937_RS20160at 4595.761 kb on + strand, within DDA3937_RS20160at 4595.762 kb on - strand, within DDA3937_RS20160at 4595.762 kb on - strand, within DDA3937_RS20160at 4595.839 kb on + strand, within DDA3937_RS20160at 4595.840 kb on - strand, within DDA3937_RS20160at 4595.840 kb on - strand, within DDA3937_RS20160at 4595.840 kb on - strand, within DDA3937_RS20160at 4595.840 kb on - strand, within DDA3937_RS20160at 4595.840 kb on - strand, within DDA3937_RS20160at 4595.840 kb on - strand, within DDA3937_RS20160at 4595.841 kb on + strand, within DDA3937_RS20160at 4595.842 kb on - strand, within DDA3937_RS20160at 4595.842 kb on - strand, within DDA3937_RS20160at 4595.842 kb on - strand, within DDA3937_RS20160at 4595.944 kb on + strandat 4595.944 kb on + strandat 4595.945 kb on - strandat 4595.945 kb on - strandat 4595.945 kb on - strandat 4595.945 kb on - strandat 4595.945 kb on - strandat 4595.946 kb on + strandat 4595.946 kb on + strandat 4595.946 kb on + strandat 4595.946 kb on + strandat 4595.946 kb on + strandat 4595.946 kb on + strandat 4595.946 kb on + strandat 4595.947 kb on - strandat 4595.947 kb on - strandat 4595.947 kb on - strandat 4595.947 kb on - strandat 4595.947 kb on - strandat 4595.947 kb on - strandat 4595.947 kb on - strandat 4595.947 kb on - strandat 4595.947 kb on - strandat 4595.947 kb on - strandat 4595.947 kb on - strandat 4595.999 kb on + strandat 4595.999 kb on + strandat 4596.000 kb on - strandat 4596.000 kb on - strandat 4596.000 kb on - strandat 4596.000 kb on - strandat 4596.000 kb on - strandat 4596.057 kb on - strand, within DDA3937_RS20165at 4596.057 kb on - strand, within DDA3937_RS20165at 4596.071 kb on + strand, within DDA3937_RS20165at 4596.071 kb on + strand, within DDA3937_RS20165at 4596.071 kb on + strand, within DDA3937_RS20165at 4596.072 kb on - strand, within DDA3937_RS20165at 4596.072 kb on - strand, within DDA3937_RS20165at 4596.113 kb on + strand, within DDA3937_RS20165at 4596.114 kb on - strand, within DDA3937_RS20165at 4596.114 kb on - strand, within DDA3937_RS20165at 4596.114 kb on - strand, within DDA3937_RS20165at 4596.127 kb on + strand, within DDA3937_RS20165at 4596.127 kb on + strand, within DDA3937_RS20165at 4596.128 kb on - strand, within DDA3937_RS20165at 4596.128 kb on - strand, within DDA3937_RS20165at 4596.142 kb on + strand, within DDA3937_RS20165at 4596.142 kb on + strand, within DDA3937_RS20165at 4596.143 kb on - strand, within DDA3937_RS20165at 4596.200 kb on + strand, within DDA3937_RS20165at 4596.201 kb on - strand, within DDA3937_RS20165at 4596.494 kb on + strand, within DDA3937_RS20170at 4596.494 kb on + strand, within DDA3937_RS20170at 4596.646 kb on + strand, within DDA3937_RS20170at 4596.647 kb on - strand, within DDA3937_RS20170at 4596.647 kb on - strand, within DDA3937_RS20170at 4596.756 kb on + strand, within DDA3937_RS20170at 4596.756 kb on + strand, within DDA3937_RS20170at 4596.756 kb on + strand, within DDA3937_RS20170at 4596.756 kb on + strand, within DDA3937_RS20170at 4596.756 kb on + strand, within DDA3937_RS20170at 4596.756 kb on + strand, within DDA3937_RS20170at 4596.756 kb on + strand, within DDA3937_RS20170at 4596.757 kb on - strand, within DDA3937_RS20170at 4596.757 kb on - strand, within DDA3937_RS20170at 4596.757 kb on - strand, within DDA3937_RS20170at 4596.757 kb on - strand, within DDA3937_RS20170at 4596.757 kb on - strand, within DDA3937_RS20170at 4596.757 kb on - strand, within DDA3937_RS20170at 4596.757 kb on - strand, within DDA3937_RS20170at 4596.757 kb on - strand, within DDA3937_RS20170at 4596.757 kb on - strand, within DDA3937_RS20170at 4596.757 kb on - strand, within DDA3937_RS20170at 4596.819 kb on + strand, within DDA3937_RS20170at 4596.820 kb on - strand, within DDA3937_RS20170at 4596.820 kb on - strand, within DDA3937_RS20170at 4596.820 kb on - strand, within DDA3937_RS20170at 4596.820 kb on - strand, within DDA3937_RS20170at 4596.854 kb on + strand, within DDA3937_RS20170at 4596.854 kb on + strand, within DDA3937_RS20170at 4596.854 kb on + strand, within DDA3937_RS20170at 4596.855 kb on - strand, within DDA3937_RS20170at 4596.855 kb on - strand, within DDA3937_RS20170at 4596.855 kb on - strand, within DDA3937_RS20170at 4596.879 kb on - strand, within DDA3937_RS20170at 4597.008 kb on + strand, within DDA3937_RS20170at 4597.008 kb on + strand, within DDA3937_RS20170at 4597.008 kb on + strand, within DDA3937_RS20170at 4597.165 kb on - strand, within DDA3937_RS20170at 4597.181 kb on + strand, within DDA3937_RS20170at 4597.181 kb on + strand, within DDA3937_RS20170at 4597.181 kb on + strand, within DDA3937_RS20170at 4597.182 kb on - strand, within DDA3937_RS20170at 4597.182 kb on - strand, within DDA3937_RS20170at 4597.184 kb on + strand, within DDA3937_RS20170at 4597.184 kb on + strand, within DDA3937_RS20170at 4597.185 kb on - strand, within DDA3937_RS20170at 4597.185 kb on - strand, within DDA3937_RS20170

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,595,114 + +0.1
4,595,114 + -4.3
4,595,115 - -2.8
4,595,226 + DDA3937_RS20160 0.20 -3.4
4,595,309 - DDA3937_RS20160 0.29 -0.3
4,595,309 - DDA3937_RS20160 0.29 -0.6
4,595,309 - DDA3937_RS20160 0.29 -0.6
4,595,360 + DDA3937_RS20160 0.35 -1.7
4,595,397 + DDA3937_RS20160 0.39 +0.2
4,595,398 - DDA3937_RS20160 0.39 -0.2
4,595,398 - DDA3937_RS20160 0.39 -0.2
4,595,398 - DDA3937_RS20160 0.39 -0.6
4,595,475 + DDA3937_RS20160 0.47 -1.1
4,595,475 + DDA3937_RS20160 0.47 -1.7
4,595,475 + DDA3937_RS20160 0.47 -2.0
4,595,475 + DDA3937_RS20160 0.47 -1.5
4,595,475 + DDA3937_RS20160 0.47 -1.9
4,595,475 + DDA3937_RS20160 0.47 -1.3
4,595,475 + DDA3937_RS20160 0.47 -3.0
4,595,476 - DDA3937_RS20160 0.47 -0.5
4,595,476 - DDA3937_RS20160 0.47 -2.8
4,595,476 - DDA3937_RS20160 0.47 -0.2
4,595,476 - DDA3937_RS20160 0.47 -0.4
4,595,476 - DDA3937_RS20160 0.47 -0.3
4,595,480 - DDA3937_RS20160 0.48 -2.8
4,595,491 + DDA3937_RS20160 0.49 -1.7
4,595,510 - DDA3937_RS20160 0.51 -0.1
4,595,510 - DDA3937_RS20160 0.51 +1.3
4,595,580 + DDA3937_RS20160 0.58 -2.1
4,595,580 + DDA3937_RS20160 0.58 -2.9
4,595,580 + DDA3937_RS20160 0.58 -0.1
4,595,581 - DDA3937_RS20160 0.58 -1.0
4,595,621 - DDA3937_RS20160 0.63 -0.5
4,595,622 + DDA3937_RS20160 0.63 -1.0
4,595,623 - DDA3937_RS20160 0.63 +0.3
4,595,651 + DDA3937_RS20160 0.66 -0.4
4,595,651 + DDA3937_RS20160 0.66 -0.0
4,595,651 + DDA3937_RS20160 0.66 +0.3
4,595,651 + DDA3937_RS20160 0.66 -1.9
4,595,651 + DDA3937_RS20160 0.66 -1.1
4,595,651 + DDA3937_RS20160 0.66 -3.5
4,595,651 + DDA3937_RS20160 0.66 -3.4
4,595,652 - DDA3937_RS20160 0.66 +0.3
4,595,652 - DDA3937_RS20160 0.66 -0.7
4,595,652 - DDA3937_RS20160 0.66 -0.3
4,595,652 - DDA3937_RS20160 0.66 -0.1
4,595,652 - DDA3937_RS20160 0.66 -1.9
4,595,652 - DDA3937_RS20160 0.66 +0.1
4,595,652 - DDA3937_RS20160 0.66 -0.3
4,595,652 - DDA3937_RS20160 0.66 -0.1
4,595,652 - DDA3937_RS20160 0.66 -0.4
4,595,652 - DDA3937_RS20160 0.66 +0.3
4,595,666 + DDA3937_RS20160 0.68 -1.5
4,595,666 + DDA3937_RS20160 0.68 -2.2
4,595,666 + DDA3937_RS20160 0.68 -1.6
4,595,680 + DDA3937_RS20160 0.69 -0.9
4,595,680 + DDA3937_RS20160 0.69 +0.2
4,595,682 + DDA3937_RS20160 0.69 -2.6
4,595,682 + DDA3937_RS20160 0.69 -1.7
4,595,683 - DDA3937_RS20160 0.69 +0.9
4,595,683 - DDA3937_RS20160 0.69 -0.4
4,595,749 - DDA3937_RS20160 0.77 -0.1
4,595,761 + DDA3937_RS20160 0.78 -0.0
4,595,761 + DDA3937_RS20160 0.78 -2.3
4,595,761 + DDA3937_RS20160 0.78 -0.8
4,595,761 + DDA3937_RS20160 0.78 -0.9
4,595,761 + DDA3937_RS20160 0.78 -1.3
4,595,762 - DDA3937_RS20160 0.78 -0.6
4,595,762 - DDA3937_RS20160 0.78 -1.2
4,595,839 + DDA3937_RS20160 0.86 -3.3
4,595,840 - DDA3937_RS20160 0.86 -3.2
4,595,840 - DDA3937_RS20160 0.86 -0.4
4,595,840 - DDA3937_RS20160 0.86 -0.1
4,595,840 - DDA3937_RS20160 0.86 -1.1
4,595,840 - DDA3937_RS20160 0.86 -0.0
4,595,840 - DDA3937_RS20160 0.86 -1.2
4,595,841 + DDA3937_RS20160 0.87 -0.8
4,595,842 - DDA3937_RS20160 0.87 -0.2
4,595,842 - DDA3937_RS20160 0.87 +0.3
4,595,842 - DDA3937_RS20160 0.87 -1.7
4,595,944 + -2.5
4,595,944 + +1.6
4,595,945 - -0.4
4,595,945 - +0.2
4,595,945 - +0.1
4,595,945 - -0.6
4,595,945 - -1.2
4,595,946 + -2.1
4,595,946 + -0.3
4,595,946 + -0.7
4,595,946 + +2.8
4,595,946 + -0.9
4,595,946 + -1.9
4,595,946 + -1.2
4,595,947 - +0.2
4,595,947 - -2.4
4,595,947 - -0.7
4,595,947 - +0.3
4,595,947 - -0.7
4,595,947 - +1.3
4,595,947 - -1.4
4,595,947 - -0.2
4,595,947 - -0.2
4,595,947 - +0.0
4,595,947 - +0.5
4,595,999 + -2.4
4,595,999 + -0.9
4,596,000 - -0.0
4,596,000 - -1.1
4,596,000 - +0.5
4,596,000 - +0.0
4,596,000 - +0.1
4,596,057 - DDA3937_RS20165 0.26 -1.7
4,596,057 - DDA3937_RS20165 0.26 -1.3
4,596,071 + DDA3937_RS20165 0.31 -1.5
4,596,071 + DDA3937_RS20165 0.31 -0.3
4,596,071 + DDA3937_RS20165 0.31 -1.7
4,596,072 - DDA3937_RS20165 0.32 -1.2
4,596,072 - DDA3937_RS20165 0.32 -0.6
4,596,113 + DDA3937_RS20165 0.48 -0.5
4,596,114 - DDA3937_RS20165 0.48 -0.8
4,596,114 - DDA3937_RS20165 0.48 +1.7
4,596,114 - DDA3937_RS20165 0.48 +0.2
4,596,127 + DDA3937_RS20165 0.53 -0.3
4,596,127 + DDA3937_RS20165 0.53 -1.4
4,596,128 - DDA3937_RS20165 0.53 -0.1
4,596,128 - DDA3937_RS20165 0.53 -1.5
4,596,142 + DDA3937_RS20165 0.59 -0.5
4,596,142 + DDA3937_RS20165 0.59 -1.1
4,596,143 - DDA3937_RS20165 0.59 -2.0
4,596,200 + DDA3937_RS20165 0.81 -1.5
4,596,201 - DDA3937_RS20165 0.82 -1.4
4,596,494 + DDA3937_RS20170 0.14 -0.3
4,596,494 + DDA3937_RS20170 0.14 -1.7
4,596,646 + DDA3937_RS20170 0.23 -0.9
4,596,647 - DDA3937_RS20170 0.23 -0.3
4,596,647 - DDA3937_RS20170 0.23 -0.5
4,596,756 + DDA3937_RS20170 0.30 +2.6
4,596,756 + DDA3937_RS20170 0.30 -2.2
4,596,756 + DDA3937_RS20170 0.30 -0.0
4,596,756 + DDA3937_RS20170 0.30 -2.1
4,596,756 + DDA3937_RS20170 0.30 -1.9
4,596,756 + DDA3937_RS20170 0.30 -1.5
4,596,756 + DDA3937_RS20170 0.30 +0.6
4,596,757 - DDA3937_RS20170 0.30 +0.5
4,596,757 - DDA3937_RS20170 0.30 +0.6
4,596,757 - DDA3937_RS20170 0.30 -0.7
4,596,757 - DDA3937_RS20170 0.30 -1.6
4,596,757 - DDA3937_RS20170 0.30 -0.5
4,596,757 - DDA3937_RS20170 0.30 +1.0
4,596,757 - DDA3937_RS20170 0.30 -1.4
4,596,757 - DDA3937_RS20170 0.30 -1.4
4,596,757 - DDA3937_RS20170 0.30 -0.5
4,596,757 - DDA3937_RS20170 0.30 -2.1
4,596,819 + DDA3937_RS20170 0.34 -0.7
4,596,820 - DDA3937_RS20170 0.34 -2.7
4,596,820 - DDA3937_RS20170 0.34 -0.4
4,596,820 - DDA3937_RS20170 0.34 -1.4
4,596,820 - DDA3937_RS20170 0.34 -0.1
4,596,854 + DDA3937_RS20170 0.36 -1.5
4,596,854 + DDA3937_RS20170 0.36 -0.8
4,596,854 + DDA3937_RS20170 0.36 -2.0
4,596,855 - DDA3937_RS20170 0.36 -1.6
4,596,855 - DDA3937_RS20170 0.36 -1.2
4,596,855 - DDA3937_RS20170 0.36 -1.0
4,596,879 - DDA3937_RS20170 0.37 -0.5
4,597,008 + DDA3937_RS20170 0.45 -1.5
4,597,008 + DDA3937_RS20170 0.45 +0.3
4,597,008 + DDA3937_RS20170 0.45 -0.1
4,597,165 - DDA3937_RS20170 0.55 -2.0
4,597,181 + DDA3937_RS20170 0.56 -2.5
4,597,181 + DDA3937_RS20170 0.56 -1.4
4,597,181 + DDA3937_RS20170 0.56 -2.3
4,597,182 - DDA3937_RS20170 0.56 -0.1
4,597,182 - DDA3937_RS20170 0.56 -0.6
4,597,184 + DDA3937_RS20170 0.56 -2.0
4,597,184 + DDA3937_RS20170 0.56 -2.6
4,597,185 - DDA3937_RS20170 0.56 -1.5
4,597,185 - DDA3937_RS20170 0.56 -1.3

Or see this region's nucleotide sequence