Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20145

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,589,667	+		DDA3937_RS20135	0.74	-1.4
4,589,667	+		DDA3937_RS20135	0.74	-1.0
4,589,667	+		DDA3937_RS20135	0.74	-0.8
4,589,667	+		DDA3937_RS20135	0.74	-0.4
4,589,668	-		DDA3937_RS20135	0.74	+1.1
4,589,668	-		DDA3937_RS20135	0.74	-0.3
4,589,668	-		DDA3937_RS20135	0.74	+0.3
4,589,668	-		DDA3937_RS20135	0.74	+0.0
4,589,746	+		DDA3937_RS20135	0.83	-1.9
4,589,746	+		DDA3937_RS20135	0.83	-0.0
4,589,747	-		DDA3937_RS20135	0.83	-1.0
4,589,747	-		DDA3937_RS20135	0.83	-1.7
4,589,747	-		DDA3937_RS20135	0.83	-1.0
4,589,774	+		DDA3937_RS20135	0.86	-1.3
4,589,775	-		DDA3937_RS20135	0.86	-0.4
4,589,775	-		DDA3937_RS20135	0.86	-0.5
4,589,775	-		DDA3937_RS20135	0.86	-1.2
4,589,864	-				-0.5
4,589,885	-				-1.9
4,589,885	-				-0.1
4,589,914	+				-0.6
4,589,914	+				-0.1
4,589,914	+				-0.5
4,589,914	+				+0.5
4,589,914	+				+0.1
4,589,914	+				+0.9
4,589,914	+				-0.6
4,589,914	+				-0.4
4,589,914	+				+0.6
4,589,915	-				+0.5
4,589,915	-				+0.1
4,589,915	-				-1.1
4,589,915	-				-1.0
4,589,920	-				-1.8
4,590,157	+		DDA3937_RS20140	0.34	+0.2
4,590,194	+		DDA3937_RS20140	0.39	-1.0
4,590,208	+		DDA3937_RS20140	0.41	-1.8
4,590,208	+		DDA3937_RS20140	0.41	-1.3
4,590,208	+		DDA3937_RS20140	0.41	-0.0
4,590,299	+		DDA3937_RS20140	0.53	-1.0
4,590,300	-		DDA3937_RS20140	0.53	-0.9
4,590,300	-		DDA3937_RS20140	0.53	+0.0
4,590,300	-		DDA3937_RS20140	0.53	-0.9
4,590,305	+		DDA3937_RS20140	0.53	-1.1
4,590,305	+				+0.3
4,590,305	+		DDA3937_RS20140	0.53	+0.0
4,590,306	-		DDA3937_RS20140	0.53	-0.8
4,590,306	-				-0.3
4,590,306	-		DDA3937_RS20140	0.53	+1.3
4,590,311	+		DDA3937_RS20140	0.54	-0.0
4,590,311	+		DDA3937_RS20140	0.54	+0.0
4,590,312	-		DDA3937_RS20140	0.54	+1.3
4,590,312	-		DDA3937_RS20140	0.54	+4.0
4,590,312	-		DDA3937_RS20140	0.54	+0.7
4,590,314	+		DDA3937_RS20140	0.55	+0.8
4,590,314	+		DDA3937_RS20140	0.55	+0.3
4,590,314	+		DDA3937_RS20140	0.55	+0.5
4,590,314	+		DDA3937_RS20140	0.55	-0.4
4,590,314	+		DDA3937_RS20140	0.55	-0.9
4,590,314	+		DDA3937_RS20140	0.55	-2.4
4,590,315	-				+1.3
4,590,315	-		DDA3937_RS20140	0.55	-0.4
4,590,315	-		DDA3937_RS20140	0.55	+0.4
4,590,315	-		DDA3937_RS20140	0.55	-0.6
4,590,356	+		DDA3937_RS20140	0.60	-0.9
4,590,356	+		DDA3937_RS20140	0.60	+0.4
4,590,357	-		DDA3937_RS20140	0.60	+1.9
4,590,357	-		DDA3937_RS20140	0.60	-0.5
4,590,371	+				+0.3
4,590,371	+		DDA3937_RS20140	0.62	-0.2
4,590,389	+		DDA3937_RS20140	0.64	+0.2
4,590,389	+		DDA3937_RS20140	0.64	+2.2
4,590,390	-		DDA3937_RS20140	0.64	+0.5
4,590,627	-				-1.4
4,590,627	-				-1.0
4,590,638	+				-0.7
4,590,638	+				-0.1
4,590,656	-				+0.4
4,590,660	-				-0.9
4,590,682	+				-0.5
4,590,682	+				+2.6
4,590,682	+				-1.3
4,590,682	+				+0.1
4,590,683	-				-0.6
4,590,683	-				-0.3
4,590,683	-				-0.2
4,590,753	+		DDA3937_RS20145	0.12	+0.8
4,590,753	+		DDA3937_RS20145	0.12	-1.4
4,590,754	-				-0.7
4,590,759	+		DDA3937_RS20145	0.13	-1.1
4,590,759	+		DDA3937_RS20145	0.13	-0.3
4,590,759	+		DDA3937_RS20145	0.13	-0.6
4,590,760	-		DDA3937_RS20145	0.13	-0.4
4,590,760	-		DDA3937_RS20145	0.13	-2.6
4,590,760	-		DDA3937_RS20145	0.13	-0.7
4,590,760	-		DDA3937_RS20145	0.13	-1.5
4,590,800	+		DDA3937_RS20145	0.18	+2.9
4,590,862	+		DDA3937_RS20145	0.27	-0.1
4,590,862	+		DDA3937_RS20145	0.27	+0.7
4,590,863	-		DDA3937_RS20145	0.27	-0.2
4,590,870	+				+0.3
4,590,870	+		DDA3937_RS20145	0.28	+0.3
4,590,871	-		DDA3937_RS20145	0.28	-0.6
4,590,918	+		DDA3937_RS20145	0.34	+0.7
4,590,919	-		DDA3937_RS20145	0.34	+1.1
4,590,919	-		DDA3937_RS20145	0.34	-1.1
4,590,962	+		DDA3937_RS20145	0.40	-0.3
4,590,962	+		DDA3937_RS20145	0.40	-0.4
4,590,963	-		DDA3937_RS20145	0.40	-0.5
4,591,007	+		DDA3937_RS20145	0.46	-0.2
4,591,007	+		DDA3937_RS20145	0.46	-0.5
4,591,008	-		DDA3937_RS20145	0.46	-0.5
4,591,035	+		DDA3937_RS20145	0.50	+0.6
4,591,035	+		DDA3937_RS20145	0.50	-2.8
4,591,036	-		DDA3937_RS20145	0.50	-0.0
4,591,036	-		DDA3937_RS20145	0.50	+0.1
4,591,036	-		DDA3937_RS20145	0.50	-0.6
4,591,038	+		DDA3937_RS20145	0.50	-0.4
4,591,038	+		DDA3937_RS20145	0.50	-2.1
4,591,062	+		DDA3937_RS20145	0.54	+0.4
4,591,083	+		DDA3937_RS20145	0.56	-0.8
4,591,084	-		DDA3937_RS20145	0.57	-1.7
4,591,126	+		DDA3937_RS20145	0.62	+1.5
4,591,175	-		DDA3937_RS20145	0.69	+1.0
4,591,187	-		DDA3937_RS20145	0.70	+0.2
4,591,187	-		DDA3937_RS20145	0.70	-1.5
4,591,216	+		DDA3937_RS20145	0.74	-0.5
4,591,216	+				+0.3
4,591,216	+		DDA3937_RS20145	0.74	-0.3
4,591,216	+		DDA3937_RS20145	0.74	-0.6
4,591,217	-		DDA3937_RS20145	0.74	+1.3
4,591,217	-		DDA3937_RS20145	0.74	-2.3
4,591,217	-		DDA3937_RS20145	0.74	-1.7
4,591,289	+		DDA3937_RS20145	0.84	-1.1
4,591,290	-		DDA3937_RS20145	0.84	-2.5
4,591,303	-		DDA3937_RS20145	0.86	-0.2
4,591,349	+				+0.5
4,591,349	+				+0.2
4,591,350	-				-3.1
4,591,350	-				+0.3
4,591,426	+				+0.4
4,591,426	+				-0.1
4,591,426	+				+2.0
4,591,426	+				-0.2
4,591,426	+				-1.0
4,591,427	-				-0.5
4,591,534	+				-1.8
4,591,535	-				-2.9
4,591,550	+				-1.1
4,591,550	+				-0.3
4,591,550	+				-0.4
4,591,566	+				+0.0
4,591,567	-				-1.5
4,591,620	+				+0.5
4,591,667	-				-0.7
4,591,685	+				-0.3
4,591,686	-				-1.1
4,591,686	-				-1.3
4,591,733	-		DDA3937_RS20150	0.11	-0.2
4,591,740	+		DDA3937_RS20150	0.11	-2.3
4,591,741	-		DDA3937_RS20150	0.11	-1.0
4,591,803	+		DDA3937_RS20150	0.15	-1.3
4,591,803	+		DDA3937_RS20150	0.15	-1.4
4,591,803	+		DDA3937_RS20150	0.15	+0.1
4,591,804	-		DDA3937_RS20150	0.15	-1.5
4,591,848	+		DDA3937_RS20150	0.18	-1.6
4,591,848	+		DDA3937_RS20150	0.18	-0.3
4,591,849	-		DDA3937_RS20150	0.18	-1.2
4,591,849	-		DDA3937_RS20150	0.18	-2.0
4,591,849	-		DDA3937_RS20150	0.18	+0.6
4,591,975	+		DDA3937_RS20150	0.27	-0.9
4,591,975	+		DDA3937_RS20150	0.27	-0.6
4,591,976	-		DDA3937_RS20150	0.27	-3.1
4,592,004	+				+1.3
4,592,004	+		DDA3937_RS20150	0.28	-2.2
4,592,004	+		DDA3937_RS20150	0.28	-2.4
4,592,004	+		DDA3937_RS20150	0.28	-0.2
4,592,004	+		DDA3937_RS20150	0.28	-1.4
4,592,005	-		DDA3937_RS20150	0.28	-0.1
4,592,133	+		DDA3937_RS20150	0.37	-1.1
4,592,134	-		DDA3937_RS20150	0.37	-2.4
4,592,134	-		DDA3937_RS20150	0.37	+0.3
4,592,134	-		DDA3937_RS20150	0.37	-2.6
4,592,134	-		DDA3937_RS20150	0.37	-2.0
4,592,134	-		DDA3937_RS20150	0.37	-0.7
4,592,134	-		DDA3937_RS20150	0.37	-3.5
4,592,134	-		DDA3937_RS20150	0.37	-0.9
4,592,173	+		DDA3937_RS20150	0.39	-3.1
4,592,173	+		DDA3937_RS20150	0.39	-1.1
4,592,174	-		DDA3937_RS20150	0.39	-1.7
4,592,198	-		DDA3937_RS20150	0.41	-3.2
4,592,198	-		DDA3937_RS20150	0.41	-0.3
4,592,214	+		DDA3937_RS20150	0.42	-1.4
4,592,214	+		DDA3937_RS20150	0.42	-0.5
4,592,214	+		DDA3937_RS20150	0.42	-4.8
4,592,337	+		DDA3937_RS20150	0.50	-0.4