Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20135

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,588,096	-		DDA3937_RS20130	0.50	-0.3
4,588,347	+		DDA3937_RS20130	0.67	-1.5
4,588,347	+		DDA3937_RS20130	0.67	-1.9
4,588,348	-		DDA3937_RS20130	0.67	-1.5
4,588,348	-		DDA3937_RS20130	0.67	-1.4
4,588,409	-		DDA3937_RS20130	0.71	-1.7
4,588,452	+		DDA3937_RS20130	0.74	-3.1
4,588,452	+		DDA3937_RS20130	0.74	-2.6
4,588,452	+		DDA3937_RS20130	0.74	+1.3
4,588,500	-		DDA3937_RS20130	0.77	-2.2
4,588,566	+		DDA3937_RS20130	0.81	-1.7
4,588,566	+		DDA3937_RS20130	0.81	-1.3
4,588,566	+		DDA3937_RS20130	0.81	-2.0
4,588,566	+		DDA3937_RS20130	0.81	-1.2
4,588,567	-		DDA3937_RS20130	0.81	+0.8
4,588,567	-		DDA3937_RS20130	0.81	-1.9
4,588,567	-		DDA3937_RS20130	0.81	-0.3
4,588,567	-		DDA3937_RS20130	0.81	-1.3
4,588,601	-		DDA3937_RS20130	0.84	-2.9
4,588,601	-		DDA3937_RS20130	0.84	-2.7
4,588,712	+				-0.3
4,588,712	+				+0.1
4,588,712	+				-1.3
4,588,712	+				-1.2
4,588,713	-				-4.0
4,588,741	-				-0.4
4,588,823	-				-2.9
4,588,823	-				-3.0
4,588,823	-				-1.0
4,588,823	-				-1.6
4,588,823	-				-2.8
4,588,830	+				-3.9
4,588,830	+				-3.7
4,588,830	+				-3.6
4,588,859	+				-0.0
4,588,859	+				-1.3
4,588,859	+				-1.9
4,588,860	-				-1.8
4,588,860	-				-0.3
4,588,879	+				-2.1
4,588,879	+				+0.9
4,588,879	+				-3.1
4,588,879	+				-3.8
4,588,880	-				-0.6
4,588,920	+				-2.7
4,588,920	+				-2.4
4,588,920	+				-1.2
4,588,925	+				-3.3
4,588,925	+				-1.3
4,588,925	+				-0.0
4,588,926	-				-1.2
4,588,926	-				-0.3
4,588,926	-				-2.5
4,588,926	-				-1.4
4,588,937	+				-1.5
4,588,937	+				-0.7
4,588,937	+				-2.6
4,588,938	-				+0.3
4,588,947	-				-0.5
4,588,956	+				-1.9
4,588,957	-				-0.9
4,588,957	-				-0.1
4,588,957	-				+0.6
4,588,957	-				+0.3
4,588,959	+				-1.5
4,588,960	-				-0.7
4,589,017	+				-0.4
4,589,232	+		DDA3937_RS20135	0.25	-1.0
4,589,316	+		DDA3937_RS20135	0.34	-1.1
4,589,316	+		DDA3937_RS20135	0.34	-0.7
4,589,317	-		DDA3937_RS20135	0.35	-0.3
4,589,651	+		DDA3937_RS20135	0.72	-0.5
4,589,652	-		DDA3937_RS20135	0.72	-1.2
4,589,652	-		DDA3937_RS20135	0.72	-0.4
4,589,667	+		DDA3937_RS20135	0.74	-1.4
4,589,667	+		DDA3937_RS20135	0.74	-1.0
4,589,667	+		DDA3937_RS20135	0.74	-0.8
4,589,667	+		DDA3937_RS20135	0.74	-0.4
4,589,668	-		DDA3937_RS20135	0.74	+1.1
4,589,668	-		DDA3937_RS20135	0.74	-0.3
4,589,668	-		DDA3937_RS20135	0.74	+0.3
4,589,668	-		DDA3937_RS20135	0.74	+0.0
4,589,746	+		DDA3937_RS20135	0.83	-1.9
4,589,746	+		DDA3937_RS20135	0.83	-0.0
4,589,747	-		DDA3937_RS20135	0.83	-1.0
4,589,747	-		DDA3937_RS20135	0.83	-1.7
4,589,747	-		DDA3937_RS20135	0.83	-1.0
4,589,774	+		DDA3937_RS20135	0.86	-1.3
4,589,775	-		DDA3937_RS20135	0.86	-0.4
4,589,775	-		DDA3937_RS20135	0.86	-0.5
4,589,775	-		DDA3937_RS20135	0.86	-1.2
4,589,864	-				-0.5
4,589,885	-				-1.9
4,589,885	-				-0.1
4,589,914	+				-0.6
4,589,914	+				-0.1
4,589,914	+				-0.5
4,589,914	+				+0.5
4,589,914	+				+0.1
4,589,914	+				+0.9
4,589,914	+				-0.6
4,589,914	+				-0.4
4,589,914	+				+0.6
4,589,915	-				+0.5
4,589,915	-				+0.1
4,589,915	-				-1.1
4,589,915	-				-1.0
4,589,920	-				-1.8
4,590,157	+		DDA3937_RS20140	0.34	+0.2
4,590,194	+		DDA3937_RS20140	0.39	-1.0
4,590,208	+		DDA3937_RS20140	0.41	-1.8
4,590,208	+		DDA3937_RS20140	0.41	-1.3
4,590,208	+		DDA3937_RS20140	0.41	-0.0
4,590,299	+		DDA3937_RS20140	0.53	-1.0
4,590,300	-		DDA3937_RS20140	0.53	-0.9
4,590,300	-		DDA3937_RS20140	0.53	+0.0
4,590,300	-		DDA3937_RS20140	0.53	-0.9
4,590,305	+		DDA3937_RS20140	0.53	-1.1
4,590,305	+				+0.3
4,590,305	+		DDA3937_RS20140	0.53	+0.0
4,590,306	-		DDA3937_RS20140	0.53	-0.8
4,590,306	-				-0.3
4,590,306	-		DDA3937_RS20140	0.53	+1.3
4,590,311	+		DDA3937_RS20140	0.54	-0.0
4,590,311	+		DDA3937_RS20140	0.54	+0.0
4,590,312	-		DDA3937_RS20140	0.54	+1.3
4,590,312	-		DDA3937_RS20140	0.54	+4.0
4,590,312	-		DDA3937_RS20140	0.54	+0.7
4,590,314	+		DDA3937_RS20140	0.55	+0.8
4,590,314	+		DDA3937_RS20140	0.55	+0.3
4,590,314	+		DDA3937_RS20140	0.55	+0.5
4,590,314	+		DDA3937_RS20140	0.55	-0.4
4,590,314	+		DDA3937_RS20140	0.55	-0.9
4,590,314	+		DDA3937_RS20140	0.55	-2.4
4,590,315	-				+1.3
4,590,315	-		DDA3937_RS20140	0.55	-0.4
4,590,315	-		DDA3937_RS20140	0.55	+0.4
4,590,315	-		DDA3937_RS20140	0.55	-0.6
4,590,356	+		DDA3937_RS20140	0.60	-0.9
4,590,356	+		DDA3937_RS20140	0.60	+0.4
4,590,357	-		DDA3937_RS20140	0.60	+1.9
4,590,357	-		DDA3937_RS20140	0.60	-0.5
4,590,371	+				+0.3
4,590,371	+		DDA3937_RS20140	0.62	-0.2
4,590,389	+		DDA3937_RS20140	0.64	+0.2
4,590,389	+		DDA3937_RS20140	0.64	+2.2
4,590,390	-		DDA3937_RS20140	0.64	+0.5
4,590,627	-				-1.4
4,590,627	-				-1.0
4,590,638	+				-0.7
4,590,638	+				-0.1
4,590,656	-				+0.4
4,590,660	-				-0.9
4,590,682	+				-0.5
4,590,682	+				+2.6
4,590,682	+				-1.3
4,590,682	+				+0.1
4,590,683	-				-0.6
4,590,683	-				-0.3
4,590,683	-				-0.2
4,590,753	+		DDA3937_RS20145	0.12	+0.8
4,590,753	+		DDA3937_RS20145	0.12	-1.4
4,590,754	-				-0.7
4,590,759	+		DDA3937_RS20145	0.13	-1.1
4,590,759	+		DDA3937_RS20145	0.13	-0.3
4,590,759	+		DDA3937_RS20145	0.13	-0.6
4,590,760	-		DDA3937_RS20145	0.13	-0.4
4,590,760	-		DDA3937_RS20145	0.13	-2.6
4,590,760	-		DDA3937_RS20145	0.13	-0.7
4,590,760	-		DDA3937_RS20145	0.13	-1.5
4,590,800	+		DDA3937_RS20145	0.18	+2.9
4,590,862	+		DDA3937_RS20145	0.27	-0.1
4,590,862	+		DDA3937_RS20145	0.27	+0.7
4,590,863	-		DDA3937_RS20145	0.27	-0.2
4,590,870	+				+0.3
4,590,870	+		DDA3937_RS20145	0.28	+0.3
4,590,871	-		DDA3937_RS20145	0.28	-0.6