Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19425 and DDA3937_RS19430 overlap by 4 nucleotides DDA3937_RS19430 and DDA3937_RS19435 are separated by 126 nucleotides DDA3937_RS19435 and DDA3937_RS19440 are separated by 45 nucleotides DDA3937_RS19440 and DDA3937_RS19445 are separated by 388 nucleotides
DDA3937_RS19425: DDA3937_RS19425 - hydrolase, at 4,416,952 to 4,417,950
_RS19425
DDA3937_RS19430: DDA3937_RS19430 - YheU family protein, at 4,417,947 to 4,418,183
_RS19430
DDA3937_RS19435: DDA3937_RS19435 - phosphoribulokinase, at 4,418,310 to 4,419,179
_RS19435
DDA3937_RS19440: DDA3937_RS19440 - OsmC family protein, at 4,419,225 to 4,419,632
_RS19440
DDA3937_RS19445: DDA3937_RS19445 - cAMP-activated global transcriptional regulator CRP, at 4,420,021 to 4,420,653
_RS19445
Position (kb)
4418
4419
4420 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 4417.525 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.534 kb on + strand, within DDA3937_RS19425 at 4417.535 kb on - strand, within DDA3937_RS19425 at 4417.535 kb on - strand, within DDA3937_RS19425 at 4417.535 kb on - strand, within DDA3937_RS19425 at 4417.625 kb on + strand, within DDA3937_RS19425 at 4417.626 kb on - strand, within DDA3937_RS19425 at 4417.667 kb on + strand, within DDA3937_RS19425 at 4417.668 kb on - strand, within DDA3937_RS19425 at 4417.668 kb on - strand at 4417.693 kb on + strand, within DDA3937_RS19425 at 4417.693 kb on + strand, within DDA3937_RS19425 at 4417.693 kb on + strand, within DDA3937_RS19425 at 4417.694 kb on - strand, within DDA3937_RS19425 at 4417.800 kb on + strand, within DDA3937_RS19425 at 4417.801 kb on - strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.802 kb on + strand, within DDA3937_RS19425 at 4417.803 kb on - strand, within DDA3937_RS19425 at 4417.828 kb on + strand, within DDA3937_RS19425 at 4417.828 kb on + strand, within DDA3937_RS19425 at 4417.829 kb on - strand, within DDA3937_RS19425 at 4417.908 kb on + strand at 4417.908 kb on + strand at 4417.909 kb on - strand at 4417.909 kb on - strand at 4417.923 kb on + strand at 4417.930 kb on + strand at 4417.931 kb on - strand at 4418.069 kb on + strand, within DDA3937_RS19430 at 4418.069 kb on + strand, within DDA3937_RS19430 at 4418.069 kb on + strand, within DDA3937_RS19430 at 4418.070 kb on - strand, within DDA3937_RS19430 at 4418.070 kb on - strand, within DDA3937_RS19430 at 4418.070 kb on - strand, within DDA3937_RS19430 at 4418.071 kb on + strand, within DDA3937_RS19430 at 4418.071 kb on + strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.072 kb on - strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.135 kb on + strand, within DDA3937_RS19430 at 4418.136 kb on - strand, within DDA3937_RS19430 at 4418.136 kb on - strand, within DDA3937_RS19430 at 4418.136 kb on - strand, within DDA3937_RS19430 at 4418.172 kb on + strand at 4418.202 kb on + strand at 4418.223 kb on + strand at 4418.224 kb on - strand at 4418.224 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.226 kb on - strand at 4418.234 kb on + strand at 4418.241 kb on + strand at 4418.241 kb on + strand at 4418.248 kb on + strand at 4418.248 kb on + strand at 4418.248 kb on + strand at 4418.249 kb on - strand at 4418.249 kb on - strand at 4418.249 kb on - strand at 4418.439 kb on + strand, within DDA3937_RS19435 at 4418.439 kb on + strand, within DDA3937_RS19435 at 4418.439 kb on + strand at 4418.439 kb on + strand, within DDA3937_RS19435 at 4418.440 kb on - strand, within DDA3937_RS19435 at 4418.440 kb on - strand, within DDA3937_RS19435 at 4418.440 kb on - strand at 4418.449 kb on - strand, within DDA3937_RS19435 at 4418.450 kb on + strand, within DDA3937_RS19435 at 4418.553 kb on - strand, within DDA3937_RS19435 at 4418.553 kb on - strand, within DDA3937_RS19435 at 4418.553 kb on - strand at 4418.566 kb on - strand, within DDA3937_RS19435 at 4418.610 kb on + strand, within DDA3937_RS19435 at 4418.610 kb on + strand, within DDA3937_RS19435 at 4418.611 kb on - strand, within DDA3937_RS19435 at 4418.611 kb on - strand, within DDA3937_RS19435 at 4418.629 kb on - strand, within DDA3937_RS19435 at 4418.695 kb on - strand, within DDA3937_RS19435 at 4418.695 kb on - strand, within DDA3937_RS19435 at 4418.877 kb on + strand, within DDA3937_RS19435 at 4418.877 kb on + strand, within DDA3937_RS19435 at 4418.878 kb on - strand at 4418.878 kb on - strand, within DDA3937_RS19435 at 4418.878 kb on - strand, within DDA3937_RS19435 at 4419.039 kb on + strand, within DDA3937_RS19435 at 4419.040 kb on - strand, within DDA3937_RS19435 at 4419.155 kb on - strand at 4419.157 kb on + strand at 4419.157 kb on + strand at 4419.157 kb on + strand at 4419.158 kb on - strand at 4419.158 kb on - strand at 4419.158 kb on - strand at 4419.171 kb on - strand at 4419.171 kb on - strand at 4419.177 kb on + strand at 4419.177 kb on + strand at 4419.178 kb on - strand at 4419.298 kb on + strand, within DDA3937_RS19440 at 4419.451 kb on + strand, within DDA3937_RS19440 at 4419.451 kb on + strand, within DDA3937_RS19440 at 4419.470 kb on + strand, within DDA3937_RS19440 at 4419.471 kb on - strand, within DDA3937_RS19440 at 4419.632 kb on + strand at 4419.632 kb on + strand at 4419.632 kb on + strand at 4419.633 kb on - strand at 4419.633 kb on - strand at 4419.675 kb on + strand at 4419.675 kb on + strand at 4419.676 kb on - strand at 4419.705 kb on + strand at 4419.706 kb on - strand at 4419.706 kb on - strand at 4419.753 kb on + strand at 4419.878 kb on + strand at 4419.878 kb on + strand at 4419.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,417,525 + DDA3937_RS19425 0.57 -0.1 4,417,534 + DDA3937_RS19425 0.58 +0.1 4,417,534 + DDA3937_RS19425 0.58 -3.6 4,417,534 + DDA3937_RS19425 0.58 +0.9 4,417,534 + DDA3937_RS19425 0.58 -1.0 4,417,535 - DDA3937_RS19425 0.58 -0.7 4,417,535 - DDA3937_RS19425 0.58 +1.6 4,417,535 - DDA3937_RS19425 0.58 -0.1 4,417,625 + DDA3937_RS19425 0.67 +0.3 4,417,626 - DDA3937_RS19425 0.67 -1.2 4,417,667 + DDA3937_RS19425 0.72 -0.9 4,417,668 - DDA3937_RS19425 0.72 -1.7 4,417,668 - +0.9 4,417,693 + DDA3937_RS19425 0.74 -1.2 4,417,693 + DDA3937_RS19425 0.74 -0.6 4,417,693 + DDA3937_RS19425 0.74 +0.4 4,417,694 - DDA3937_RS19425 0.74 -0.8 4,417,800 + DDA3937_RS19425 0.85 +1.1 4,417,801 - DDA3937_RS19425 0.85 -2.4 4,417,802 + DDA3937_RS19425 0.85 +1.0 4,417,802 + DDA3937_RS19425 0.85 -1.0 4,417,802 + DDA3937_RS19425 0.85 -1.0 4,417,802 + DDA3937_RS19425 0.85 +1.4 4,417,802 + DDA3937_RS19425 0.85 -1.1 4,417,803 - DDA3937_RS19425 0.85 -0.7 4,417,828 + DDA3937_RS19425 0.88 -0.9 4,417,828 + DDA3937_RS19425 0.88 +0.8 4,417,829 - DDA3937_RS19425 0.88 +0.3 4,417,908 + -0.6 4,417,908 + +0.3 4,417,909 - +1.3 4,417,909 - -0.9 4,417,923 + +1.6 4,417,930 + -1.5 4,417,931 - +2.9 4,418,069 + DDA3937_RS19430 0.51 +0.2 4,418,069 + DDA3937_RS19430 0.51 +1.8 4,418,069 + DDA3937_RS19430 0.51 +0.3 4,418,070 - DDA3937_RS19430 0.52 +0.6 4,418,070 - DDA3937_RS19430 0.52 -0.4 4,418,070 - DDA3937_RS19430 0.52 +0.7 4,418,071 + DDA3937_RS19430 0.52 +0.2 4,418,071 + DDA3937_RS19430 0.52 -0.3 4,418,072 - DDA3937_RS19430 0.53 +0.3 4,418,072 - DDA3937_RS19430 0.53 -0.5 4,418,072 - DDA3937_RS19430 0.53 +0.8 4,418,072 - DDA3937_RS19430 0.53 -0.2 4,418,072 - DDA3937_RS19430 0.53 -1.0 4,418,072 - DDA3937_RS19430 0.53 -2.3 4,418,072 - DDA3937_RS19430 0.53 -1.9 4,418,072 - DDA3937_RS19430 0.53 -0.7 4,418,072 - DDA3937_RS19430 0.53 +0.7 4,418,072 - DDA3937_RS19430 0.53 +3.4 4,418,135 + DDA3937_RS19430 0.79 -0.7 4,418,135 + DDA3937_RS19430 0.79 +0.5 4,418,135 + DDA3937_RS19430 0.79 -1.3 4,418,135 + DDA3937_RS19430 0.79 -0.3 4,418,135 + DDA3937_RS19430 0.79 +0.2 4,418,136 - DDA3937_RS19430 0.80 -0.0 4,418,136 - DDA3937_RS19430 0.80 -0.8 4,418,136 - DDA3937_RS19430 0.80 -0.3 4,418,172 + +0.5 4,418,202 + -1.7 4,418,223 + +0.1 4,418,224 - -0.9 4,418,224 - +0.7 4,418,226 - +0.3 4,418,226 - -0.8 4,418,226 - -0.3 4,418,226 - -0.1 4,418,226 - +0.7 4,418,234 + -0.2 4,418,241 + +0.1 4,418,241 + -1.4 4,418,248 + -0.3 4,418,248 + +0.3 4,418,248 + +0.2 4,418,249 - +3.8 4,418,249 - -0.1 4,418,249 - +0.5 4,418,439 + DDA3937_RS19435 0.15 -0.1 4,418,439 + DDA3937_RS19435 0.15 -0.8 4,418,439 + -0.7 4,418,439 + DDA3937_RS19435 0.15 -0.7 4,418,440 - DDA3937_RS19435 0.15 -0.9 4,418,440 - DDA3937_RS19435 0.15 -1.5 4,418,440 - -0.3 4,418,449 - DDA3937_RS19435 0.16 -0.3 4,418,450 + DDA3937_RS19435 0.16 -0.5 4,418,553 - DDA3937_RS19435 0.28 +0.4 4,418,553 - DDA3937_RS19435 0.28 -0.4 4,418,553 - +0.7 4,418,566 - DDA3937_RS19435 0.29 -0.3 4,418,610 + DDA3937_RS19435 0.34 -1.0 4,418,610 + DDA3937_RS19435 0.34 -2.0 4,418,611 - DDA3937_RS19435 0.35 -0.3 4,418,611 - DDA3937_RS19435 0.35 -1.6 4,418,629 - DDA3937_RS19435 0.37 -2.0 4,418,695 - DDA3937_RS19435 0.44 -1.5 4,418,695 - DDA3937_RS19435 0.44 -1.0 4,418,877 + DDA3937_RS19435 0.65 -0.8 4,418,877 + DDA3937_RS19435 0.65 -2.0 4,418,878 - -0.3 4,418,878 - DDA3937_RS19435 0.65 -2.0 4,418,878 - DDA3937_RS19435 0.65 +1.1 4,419,039 + DDA3937_RS19435 0.84 -0.7 4,419,040 - DDA3937_RS19435 0.84 -0.9 4,419,155 - -0.7 4,419,157 + -1.3 4,419,157 + -0.2 4,419,157 + +1.6 4,419,158 - +0.1 4,419,158 - +0.3 4,419,158 - -1.4 4,419,171 - -3.5 4,419,171 - +2.2 4,419,177 + +0.5 4,419,177 + -0.4 4,419,178 - -1.3 4,419,298 + DDA3937_RS19440 0.18 +1.0 4,419,451 + DDA3937_RS19440 0.55 +1.5 4,419,451 + DDA3937_RS19440 0.55 -1.9 4,419,470 + DDA3937_RS19440 0.60 +0.3 4,419,471 - DDA3937_RS19440 0.60 +1.1 4,419,632 + +0.7 4,419,632 + -1.5 4,419,632 + +1.3 4,419,633 - -0.3 4,419,633 - -0.5 4,419,675 + +0.4 4,419,675 + +5.0 4,419,676 - -1.3 4,419,705 + -0.4 4,419,706 - -0.7 4,419,706 - -0.3 4,419,753 + -1.3 4,419,878 + +0.1 4,419,878 + -0.4 4,419,948 - +0.1
Or see this region's nucleotide sequence