Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19435

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS19425 and DDA3937_RS19430 overlap by 4 nucleotidesDDA3937_RS19430 and DDA3937_RS19435 are separated by 126 nucleotidesDDA3937_RS19435 and DDA3937_RS19440 are separated by 45 nucleotidesDDA3937_RS19440 and DDA3937_RS19445 are separated by 388 nucleotides DDA3937_RS19425: DDA3937_RS19425 - hydrolase, at 4,416,952 to 4,417,950 _RS19425 DDA3937_RS19430: DDA3937_RS19430 - YheU family protein, at 4,417,947 to 4,418,183 _RS19430 DDA3937_RS19435: DDA3937_RS19435 - phosphoribulokinase, at 4,418,310 to 4,419,179 _RS19435 DDA3937_RS19440: DDA3937_RS19440 - OsmC family protein, at 4,419,225 to 4,419,632 _RS19440 DDA3937_RS19445: DDA3937_RS19445 - cAMP-activated global transcriptional regulator CRP, at 4,420,021 to 4,420,653 _RS19445 Position (kb) 4418 4419 4420Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4417.525 kb on + strand, within DDA3937_RS19425at 4417.534 kb on + strand, within DDA3937_RS19425at 4417.534 kb on + strand, within DDA3937_RS19425at 4417.534 kb on + strand, within DDA3937_RS19425at 4417.534 kb on + strand, within DDA3937_RS19425at 4417.535 kb on - strand, within DDA3937_RS19425at 4417.535 kb on - strand, within DDA3937_RS19425at 4417.535 kb on - strand, within DDA3937_RS19425at 4417.625 kb on + strand, within DDA3937_RS19425at 4417.626 kb on - strand, within DDA3937_RS19425at 4417.667 kb on + strand, within DDA3937_RS19425at 4417.668 kb on - strand, within DDA3937_RS19425at 4417.668 kb on - strandat 4417.693 kb on + strand, within DDA3937_RS19425at 4417.693 kb on + strand, within DDA3937_RS19425at 4417.693 kb on + strand, within DDA3937_RS19425at 4417.694 kb on - strand, within DDA3937_RS19425at 4417.800 kb on + strand, within DDA3937_RS19425at 4417.801 kb on - strand, within DDA3937_RS19425at 4417.802 kb on + strand, within DDA3937_RS19425at 4417.802 kb on + strand, within DDA3937_RS19425at 4417.802 kb on + strand, within DDA3937_RS19425at 4417.802 kb on + strand, within DDA3937_RS19425at 4417.802 kb on + strand, within DDA3937_RS19425at 4417.803 kb on - strand, within DDA3937_RS19425at 4417.828 kb on + strand, within DDA3937_RS19425at 4417.828 kb on + strand, within DDA3937_RS19425at 4417.829 kb on - strand, within DDA3937_RS19425at 4417.908 kb on + strandat 4417.908 kb on + strandat 4417.909 kb on - strandat 4417.909 kb on - strandat 4417.923 kb on + strandat 4417.930 kb on + strandat 4417.931 kb on - strandat 4418.069 kb on + strand, within DDA3937_RS19430at 4418.069 kb on + strand, within DDA3937_RS19430at 4418.069 kb on + strand, within DDA3937_RS19430at 4418.070 kb on - strand, within DDA3937_RS19430at 4418.070 kb on - strand, within DDA3937_RS19430at 4418.070 kb on - strand, within DDA3937_RS19430at 4418.071 kb on + strand, within DDA3937_RS19430at 4418.071 kb on + strand, within DDA3937_RS19430at 4418.072 kb on - strand, within DDA3937_RS19430at 4418.072 kb on - strand, within DDA3937_RS19430at 4418.072 kb on - strand, within DDA3937_RS19430at 4418.072 kb on - strand, within DDA3937_RS19430at 4418.072 kb on - strand, within DDA3937_RS19430at 4418.072 kb on - strand, within DDA3937_RS19430at 4418.072 kb on - strand, within DDA3937_RS19430at 4418.072 kb on - strand, within DDA3937_RS19430at 4418.072 kb on - strand, within DDA3937_RS19430at 4418.072 kb on - strand, within DDA3937_RS19430at 4418.135 kb on + strand, within DDA3937_RS19430at 4418.135 kb on + strand, within DDA3937_RS19430at 4418.135 kb on + strand, within DDA3937_RS19430at 4418.135 kb on + strand, within DDA3937_RS19430at 4418.135 kb on + strand, within DDA3937_RS19430at 4418.136 kb on - strand, within DDA3937_RS19430at 4418.136 kb on - strand, within DDA3937_RS19430at 4418.136 kb on - strand, within DDA3937_RS19430at 4418.172 kb on + strandat 4418.202 kb on + strandat 4418.223 kb on + strandat 4418.224 kb on - strandat 4418.224 kb on - strandat 4418.226 kb on - strandat 4418.226 kb on - strandat 4418.226 kb on - strandat 4418.226 kb on - strandat 4418.226 kb on - strandat 4418.234 kb on + strandat 4418.241 kb on + strandat 4418.241 kb on + strandat 4418.248 kb on + strandat 4418.248 kb on + strandat 4418.248 kb on + strandat 4418.249 kb on - strandat 4418.249 kb on - strandat 4418.249 kb on - strandat 4418.439 kb on + strand, within DDA3937_RS19435at 4418.439 kb on + strand, within DDA3937_RS19435at 4418.439 kb on + strandat 4418.439 kb on + strand, within DDA3937_RS19435at 4418.440 kb on - strand, within DDA3937_RS19435at 4418.440 kb on - strand, within DDA3937_RS19435at 4418.440 kb on - strandat 4418.449 kb on - strand, within DDA3937_RS19435at 4418.450 kb on + strand, within DDA3937_RS19435at 4418.553 kb on - strand, within DDA3937_RS19435at 4418.553 kb on - strand, within DDA3937_RS19435at 4418.553 kb on - strandat 4418.566 kb on - strand, within DDA3937_RS19435at 4418.610 kb on + strand, within DDA3937_RS19435at 4418.610 kb on + strand, within DDA3937_RS19435at 4418.611 kb on - strand, within DDA3937_RS19435at 4418.611 kb on - strand, within DDA3937_RS19435at 4418.629 kb on - strand, within DDA3937_RS19435at 4418.695 kb on - strand, within DDA3937_RS19435at 4418.695 kb on - strand, within DDA3937_RS19435at 4418.877 kb on + strand, within DDA3937_RS19435at 4418.877 kb on + strand, within DDA3937_RS19435at 4418.878 kb on - strandat 4418.878 kb on - strand, within DDA3937_RS19435at 4418.878 kb on - strand, within DDA3937_RS19435at 4419.039 kb on + strand, within DDA3937_RS19435at 4419.040 kb on - strand, within DDA3937_RS19435at 4419.155 kb on - strandat 4419.157 kb on + strandat 4419.157 kb on + strandat 4419.157 kb on + strandat 4419.158 kb on - strandat 4419.158 kb on - strandat 4419.158 kb on - strandat 4419.171 kb on - strandat 4419.171 kb on - strandat 4419.177 kb on + strandat 4419.177 kb on + strandat 4419.178 kb on - strandat 4419.298 kb on + strand, within DDA3937_RS19440at 4419.451 kb on + strand, within DDA3937_RS19440at 4419.451 kb on + strand, within DDA3937_RS19440at 4419.470 kb on + strand, within DDA3937_RS19440at 4419.471 kb on - strand, within DDA3937_RS19440at 4419.632 kb on + strandat 4419.632 kb on + strandat 4419.632 kb on + strandat 4419.633 kb on - strandat 4419.633 kb on - strandat 4419.675 kb on + strandat 4419.675 kb on + strandat 4419.676 kb on - strandat 4419.705 kb on + strandat 4419.706 kb on - strandat 4419.706 kb on - strandat 4419.753 kb on + strandat 4419.878 kb on + strandat 4419.878 kb on + strandat 4419.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,417,525 + DDA3937_RS19425 0.57 -0.1
4,417,534 + DDA3937_RS19425 0.58 +0.1
4,417,534 + DDA3937_RS19425 0.58 -3.6
4,417,534 + DDA3937_RS19425 0.58 +0.9
4,417,534 + DDA3937_RS19425 0.58 -1.0
4,417,535 - DDA3937_RS19425 0.58 -0.7
4,417,535 - DDA3937_RS19425 0.58 +1.6
4,417,535 - DDA3937_RS19425 0.58 -0.1
4,417,625 + DDA3937_RS19425 0.67 +0.3
4,417,626 - DDA3937_RS19425 0.67 -1.2
4,417,667 + DDA3937_RS19425 0.72 -0.9
4,417,668 - DDA3937_RS19425 0.72 -1.7
4,417,668 - +0.9
4,417,693 + DDA3937_RS19425 0.74 -1.2
4,417,693 + DDA3937_RS19425 0.74 -0.6
4,417,693 + DDA3937_RS19425 0.74 +0.4
4,417,694 - DDA3937_RS19425 0.74 -0.8
4,417,800 + DDA3937_RS19425 0.85 +1.1
4,417,801 - DDA3937_RS19425 0.85 -2.4
4,417,802 + DDA3937_RS19425 0.85 +1.0
4,417,802 + DDA3937_RS19425 0.85 -1.0
4,417,802 + DDA3937_RS19425 0.85 -1.0
4,417,802 + DDA3937_RS19425 0.85 +1.4
4,417,802 + DDA3937_RS19425 0.85 -1.1
4,417,803 - DDA3937_RS19425 0.85 -0.7
4,417,828 + DDA3937_RS19425 0.88 -0.9
4,417,828 + DDA3937_RS19425 0.88 +0.8
4,417,829 - DDA3937_RS19425 0.88 +0.3
4,417,908 + -0.6
4,417,908 + +0.3
4,417,909 - +1.3
4,417,909 - -0.9
4,417,923 + +1.6
4,417,930 + -1.5
4,417,931 - +2.9
4,418,069 + DDA3937_RS19430 0.51 +0.2
4,418,069 + DDA3937_RS19430 0.51 +1.8
4,418,069 + DDA3937_RS19430 0.51 +0.3
4,418,070 - DDA3937_RS19430 0.52 +0.6
4,418,070 - DDA3937_RS19430 0.52 -0.4
4,418,070 - DDA3937_RS19430 0.52 +0.7
4,418,071 + DDA3937_RS19430 0.52 +0.2
4,418,071 + DDA3937_RS19430 0.52 -0.3
4,418,072 - DDA3937_RS19430 0.53 +0.3
4,418,072 - DDA3937_RS19430 0.53 -0.5
4,418,072 - DDA3937_RS19430 0.53 +0.8
4,418,072 - DDA3937_RS19430 0.53 -0.2
4,418,072 - DDA3937_RS19430 0.53 -1.0
4,418,072 - DDA3937_RS19430 0.53 -2.3
4,418,072 - DDA3937_RS19430 0.53 -1.9
4,418,072 - DDA3937_RS19430 0.53 -0.7
4,418,072 - DDA3937_RS19430 0.53 +0.7
4,418,072 - DDA3937_RS19430 0.53 +3.4
4,418,135 + DDA3937_RS19430 0.79 -0.7
4,418,135 + DDA3937_RS19430 0.79 +0.5
4,418,135 + DDA3937_RS19430 0.79 -1.3
4,418,135 + DDA3937_RS19430 0.79 -0.3
4,418,135 + DDA3937_RS19430 0.79 +0.2
4,418,136 - DDA3937_RS19430 0.80 -0.0
4,418,136 - DDA3937_RS19430 0.80 -0.8
4,418,136 - DDA3937_RS19430 0.80 -0.3
4,418,172 + +0.5
4,418,202 + -1.7
4,418,223 + +0.1
4,418,224 - -0.9
4,418,224 - +0.7
4,418,226 - +0.3
4,418,226 - -0.8
4,418,226 - -0.3
4,418,226 - -0.1
4,418,226 - +0.7
4,418,234 + -0.2
4,418,241 + +0.1
4,418,241 + -1.4
4,418,248 + -0.3
4,418,248 + +0.3
4,418,248 + +0.2
4,418,249 - +3.8
4,418,249 - -0.1
4,418,249 - +0.5
4,418,439 + DDA3937_RS19435 0.15 -0.1
4,418,439 + DDA3937_RS19435 0.15 -0.8
4,418,439 + -0.7
4,418,439 + DDA3937_RS19435 0.15 -0.7
4,418,440 - DDA3937_RS19435 0.15 -0.9
4,418,440 - DDA3937_RS19435 0.15 -1.5
4,418,440 - -0.3
4,418,449 - DDA3937_RS19435 0.16 -0.3
4,418,450 + DDA3937_RS19435 0.16 -0.5
4,418,553 - DDA3937_RS19435 0.28 +0.4
4,418,553 - DDA3937_RS19435 0.28 -0.4
4,418,553 - +0.7
4,418,566 - DDA3937_RS19435 0.29 -0.3
4,418,610 + DDA3937_RS19435 0.34 -1.0
4,418,610 + DDA3937_RS19435 0.34 -2.0
4,418,611 - DDA3937_RS19435 0.35 -0.3
4,418,611 - DDA3937_RS19435 0.35 -1.6
4,418,629 - DDA3937_RS19435 0.37 -2.0
4,418,695 - DDA3937_RS19435 0.44 -1.5
4,418,695 - DDA3937_RS19435 0.44 -1.0
4,418,877 + DDA3937_RS19435 0.65 -0.8
4,418,877 + DDA3937_RS19435 0.65 -2.0
4,418,878 - -0.3
4,418,878 - DDA3937_RS19435 0.65 -2.0
4,418,878 - DDA3937_RS19435 0.65 +1.1
4,419,039 + DDA3937_RS19435 0.84 -0.7
4,419,040 - DDA3937_RS19435 0.84 -0.9
4,419,155 - -0.7
4,419,157 + -1.3
4,419,157 + -0.2
4,419,157 + +1.6
4,419,158 - +0.1
4,419,158 - +0.3
4,419,158 - -1.4
4,419,171 - -3.5
4,419,171 - +2.2
4,419,177 + +0.5
4,419,177 + -0.4
4,419,178 - -1.3
4,419,298 + DDA3937_RS19440 0.18 +1.0
4,419,451 + DDA3937_RS19440 0.55 +1.5
4,419,451 + DDA3937_RS19440 0.55 -1.9
4,419,470 + DDA3937_RS19440 0.60 +0.3
4,419,471 - DDA3937_RS19440 0.60 +1.1
4,419,632 + +0.7
4,419,632 + -1.5
4,419,632 + +1.3
4,419,633 - -0.3
4,419,633 - -0.5
4,419,675 + +0.4
4,419,675 + +5.0
4,419,676 - -1.3
4,419,705 + -0.4
4,419,706 - -0.7
4,419,706 - -0.3
4,419,753 + -1.3
4,419,878 + +0.1
4,419,878 + -0.4
4,419,948 - +0.1

Or see this region's nucleotide sequence