Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18405

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS23345 and DDA3937_RS18400 are separated by 30 nucleotidesDDA3937_RS18400 and DDA3937_RS18405 are separated by 141 nucleotidesDDA3937_RS18405 and DDA3937_RS18410 are separated by 3 nucleotidesDDA3937_RS18410 and DDA3937_RS18415 are separated by 2 nucleotides DDA3937_RS23345: DDA3937_RS23345 - hypothetical protein, at 4,203,306 to 4,203,554 _RS23345 DDA3937_RS18400: DDA3937_RS18400 - peroxide stress protein YaaA, at 4,203,585 to 4,204,364 _RS18400 DDA3937_RS18405: DDA3937_RS18405 - threonine synthase, at 4,204,506 to 4,205,795 _RS18405 DDA3937_RS18410: DDA3937_RS18410 - homoserine kinase, at 4,205,799 to 4,206,728 _RS18410 DDA3937_RS18415: DDA3937_RS18415 - bifunctional aspartate kinase/homoserine dehydrogenase I, at 4,206,731 to 4,209,187 _RS18415 Position (kb) 4204 4205 4206Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4203.552 kb on + strandat 4203.552 kb on + strandat 4203.552 kb on + strandat 4203.553 kb on - strandat 4203.553 kb on - strandat 4203.579 kb on - strandat 4203.584 kb on + strandat 4203.584 kb on + strandat 4203.585 kb on - strandat 4203.621 kb on + strandat 4203.649 kb on - strandat 4203.650 kb on + strandat 4203.650 kb on + strandat 4203.650 kb on + strandat 4203.650 kb on + strandat 4203.651 kb on - strandat 4203.651 kb on - strandat 4203.651 kb on - strandat 4203.651 kb on - strandat 4203.846 kb on + strand, within DDA3937_RS18400at 4203.846 kb on + strand, within DDA3937_RS18400at 4203.846 kb on + strand, within DDA3937_RS18400at 4203.847 kb on - strand, within DDA3937_RS18400at 4203.847 kb on - strand, within DDA3937_RS18400at 4203.911 kb on + strand, within DDA3937_RS18400at 4203.912 kb on - strand, within DDA3937_RS18400at 4203.912 kb on - strand, within DDA3937_RS18400at 4203.912 kb on - strand, within DDA3937_RS18400at 4203.927 kb on + strand, within DDA3937_RS18400at 4204.014 kb on + strand, within DDA3937_RS18400at 4204.015 kb on - strand, within DDA3937_RS18400at 4204.015 kb on - strand, within DDA3937_RS18400at 4204.015 kb on - strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.016 kb on + strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.017 kb on - strand, within DDA3937_RS18400at 4204.107 kb on + strand, within DDA3937_RS18400at 4204.107 kb on + strand, within DDA3937_RS18400at 4204.107 kb on + strand, within DDA3937_RS18400at 4204.108 kb on - strand, within DDA3937_RS18400at 4204.150 kb on + strand, within DDA3937_RS18400at 4204.151 kb on - strand, within DDA3937_RS18400at 4204.204 kb on - strand, within DDA3937_RS18400at 4204.296 kb on + strandat 4204.297 kb on - strandat 4204.297 kb on - strandat 4204.297 kb on - strandat 4204.299 kb on + strandat 4204.299 kb on + strandat 4204.395 kb on - strandat 4204.395 kb on - strandat 4204.436 kb on + strandat 4204.445 kb on - strandat 4204.495 kb on + strandat 4204.495 kb on + strandat 4204.508 kb on - strandat 4204.623 kb on - strandat 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.751 kb on + strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.752 kb on - strand, within DDA3937_RS18405at 4204.753 kb on + strand, within DDA3937_RS18405at 4204.753 kb on + strand, within DDA3937_RS18405at 4204.754 kb on - strand, within DDA3937_RS18405at 4204.781 kb on + strand, within DDA3937_RS18405at 4204.781 kb on + strand, within DDA3937_RS18405at 4204.782 kb on - strand, within DDA3937_RS18405at 4204.782 kb on - strand, within DDA3937_RS18405at 4204.782 kb on - strand, within DDA3937_RS18405at 4204.782 kb on - strand, within DDA3937_RS18405at 4204.782 kb on - strand, within DDA3937_RS18405at 4204.988 kb on + strand, within DDA3937_RS18405at 4204.989 kb on - strand, within DDA3937_RS18405at 4205.074 kb on - strand, within DDA3937_RS18405at 4205.074 kb on - strand, within DDA3937_RS18405at 4205.119 kb on + strand, within DDA3937_RS18405at 4205.119 kb on + strand, within DDA3937_RS18405at 4205.120 kb on - strand, within DDA3937_RS18405at 4205.120 kb on - strand, within DDA3937_RS18405at 4205.120 kb on - strand, within DDA3937_RS18405at 4205.122 kb on + strand, within DDA3937_RS18405at 4205.122 kb on + strand, within DDA3937_RS18405at 4205.122 kb on + strand, within DDA3937_RS18405at 4205.123 kb on - strand, within DDA3937_RS18405at 4205.123 kb on - strand, within DDA3937_RS18405at 4205.123 kb on - strand, within DDA3937_RS18405at 4205.123 kb on - strand, within DDA3937_RS18405at 4205.258 kb on + strand, within DDA3937_RS18405at 4205.282 kb on + strand, within DDA3937_RS18405at 4205.283 kb on - strand, within DDA3937_RS18405at 4205.283 kb on - strand, within DDA3937_RS18405at 4205.283 kb on - strand, within DDA3937_RS18405at 4205.360 kb on - strand, within DDA3937_RS18405at 4205.578 kb on + strand, within DDA3937_RS18405at 4205.579 kb on - strand, within DDA3937_RS18405at 4205.720 kb on + strandat 4205.720 kb on + strandat 4205.720 kb on + strandat 4205.721 kb on - strandat 4205.721 kb on - strandat 4205.785 kb on + strandat 4205.786 kb on - strandat 4205.786 kb on - strandat 4205.786 kb on - strandat 4205.840 kb on + strandat 4205.840 kb on + strandat 4205.841 kb on - strandat 4205.841 kb on - strandat 4205.841 kb on - strandat 4205.841 kb on - strandat 4205.841 kb on - strandat 4205.841 kb on - strandat 4205.870 kb on - strandat 4205.870 kb on - strandat 4205.915 kb on + strand, within DDA3937_RS18410at 4205.915 kb on + strand, within DDA3937_RS18410at 4205.915 kb on + strand, within DDA3937_RS18410at 4205.915 kb on + strand, within DDA3937_RS18410at 4205.916 kb on - strand, within DDA3937_RS18410at 4205.916 kb on - strand, within DDA3937_RS18410at 4206.029 kb on - strand, within DDA3937_RS18410at 4206.145 kb on + strand, within DDA3937_RS18410at 4206.146 kb on - strand, within DDA3937_RS18410at 4206.311 kb on - strandat 4206.532 kb on + strand, within DDA3937_RS18410at 4206.532 kb on + strand, within DDA3937_RS18410at 4206.533 kb on - strand, within DDA3937_RS18410at 4206.533 kb on - strand, within DDA3937_RS18410at 4206.533 kb on - strand, within DDA3937_RS18410at 4206.596 kb on + strand, within DDA3937_RS18410at 4206.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,203,552 + -0.7
4,203,552 + -0.4
4,203,552 + -0.9
4,203,553 - -0.4
4,203,553 - -0.7
4,203,579 - -1.3
4,203,584 + -0.0
4,203,584 + +0.2
4,203,585 - -0.3
4,203,621 + +3.0
4,203,649 - +0.7
4,203,650 + +0.8
4,203,650 + -0.0
4,203,650 + -0.4
4,203,650 + -0.8
4,203,651 - -0.5
4,203,651 - +0.6
4,203,651 - +0.2
4,203,651 - -0.1
4,203,846 + DDA3937_RS18400 0.33 +2.2
4,203,846 + DDA3937_RS18400 0.33 -0.6
4,203,846 + DDA3937_RS18400 0.33 -0.0
4,203,847 - DDA3937_RS18400 0.34 +1.7
4,203,847 - DDA3937_RS18400 0.34 -0.4
4,203,911 + DDA3937_RS18400 0.42 -3.0
4,203,912 - DDA3937_RS18400 0.42 +0.7
4,203,912 - DDA3937_RS18400 0.42 +0.2
4,203,912 - DDA3937_RS18400 0.42 +0.0
4,203,927 + DDA3937_RS18400 0.44 -0.2
4,204,014 + DDA3937_RS18400 0.55 -1.6
4,204,015 - DDA3937_RS18400 0.55 -0.5
4,204,015 - DDA3937_RS18400 0.55 -0.5
4,204,015 - DDA3937_RS18400 0.55 -0.1
4,204,016 + DDA3937_RS18400 0.55 +0.6
4,204,016 + DDA3937_RS18400 0.55 +0.1
4,204,016 + DDA3937_RS18400 0.55 -1.5
4,204,016 + DDA3937_RS18400 0.55 +1.8
4,204,016 + DDA3937_RS18400 0.55 +0.8
4,204,017 - DDA3937_RS18400 0.55 -0.2
4,204,017 - DDA3937_RS18400 0.55 -0.1
4,204,017 - DDA3937_RS18400 0.55 +0.2
4,204,017 - DDA3937_RS18400 0.55 -1.6
4,204,017 - DDA3937_RS18400 0.55 -0.8
4,204,107 + DDA3937_RS18400 0.67 -0.6
4,204,107 + DDA3937_RS18400 0.67 +0.2
4,204,107 + DDA3937_RS18400 0.67 -1.0
4,204,108 - DDA3937_RS18400 0.67 -0.8
4,204,150 + DDA3937_RS18400 0.72 +0.7
4,204,151 - DDA3937_RS18400 0.73 +0.3
4,204,204 - DDA3937_RS18400 0.79 +0.1
4,204,296 + -0.7
4,204,297 - -0.4
4,204,297 - -0.5
4,204,297 - -0.2
4,204,299 + +0.7
4,204,299 + -0.3
4,204,395 - +1.2
4,204,395 - -0.9
4,204,436 + -0.3
4,204,445 - -0.8
4,204,495 + -0.5
4,204,495 + +0.9
4,204,508 - +0.7
4,204,623 - -0.4
4,204,751 + DDA3937_RS18405 0.19 -3.3
4,204,751 + DDA3937_RS18405 0.19 -2.3
4,204,751 + DDA3937_RS18405 0.19 -1.3
4,204,751 + DDA3937_RS18405 0.19 -4.2
4,204,751 + DDA3937_RS18405 0.19 -4.3
4,204,751 + DDA3937_RS18405 0.19 -1.1
4,204,751 + DDA3937_RS18405 0.19 -2.8
4,204,751 + DDA3937_RS18405 0.19 +0.4
4,204,751 + DDA3937_RS18405 0.19 -2.1
4,204,751 + DDA3937_RS18405 0.19 -2.8
4,204,751 + DDA3937_RS18405 0.19 -3.4
4,204,751 + DDA3937_RS18405 0.19 -3.5
4,204,752 - DDA3937_RS18405 0.19 -3.7
4,204,752 - DDA3937_RS18405 0.19 -2.0
4,204,752 - DDA3937_RS18405 0.19 -3.1
4,204,752 - DDA3937_RS18405 0.19 -2.3
4,204,752 - DDA3937_RS18405 0.19 -2.0
4,204,752 - DDA3937_RS18405 0.19 -1.4
4,204,752 - DDA3937_RS18405 0.19 -1.0
4,204,752 - DDA3937_RS18405 0.19 -0.1
4,204,752 - DDA3937_RS18405 0.19 +1.6
4,204,752 - DDA3937_RS18405 0.19 -3.6
4,204,753 + DDA3937_RS18405 0.19 -1.7
4,204,753 + DDA3937_RS18405 0.19 -4.0
4,204,754 - DDA3937_RS18405 0.19 -1.6
4,204,781 + DDA3937_RS18405 0.21 -1.6
4,204,781 + DDA3937_RS18405 0.21 -4.3
4,204,782 - DDA3937_RS18405 0.21 -3.1
4,204,782 - DDA3937_RS18405 0.21 -2.2
4,204,782 - DDA3937_RS18405 0.21 -2.6
4,204,782 - DDA3937_RS18405 0.21 -2.8
4,204,782 - DDA3937_RS18405 0.21 -4.2
4,204,988 + DDA3937_RS18405 0.37 -3.7
4,204,989 - DDA3937_RS18405 0.37 -0.8
4,205,074 - DDA3937_RS18405 0.44 -2.3
4,205,074 - DDA3937_RS18405 0.44 -3.9
4,205,119 + DDA3937_RS18405 0.48 -4.8
4,205,119 + DDA3937_RS18405 0.48 -3.1
4,205,120 - DDA3937_RS18405 0.48 -3.4
4,205,120 - DDA3937_RS18405 0.48 -3.6
4,205,120 - DDA3937_RS18405 0.48 -1.8
4,205,122 + DDA3937_RS18405 0.48 -1.4
4,205,122 + DDA3937_RS18405 0.48 -3.0
4,205,122 + DDA3937_RS18405 0.48 -4.0
4,205,123 - DDA3937_RS18405 0.48 -3.8
4,205,123 - DDA3937_RS18405 0.48 -2.4
4,205,123 - DDA3937_RS18405 0.48 -2.8
4,205,123 - DDA3937_RS18405 0.48 -3.4
4,205,258 + DDA3937_RS18405 0.58 -1.1
4,205,282 + DDA3937_RS18405 0.60 -3.2
4,205,283 - DDA3937_RS18405 0.60 -1.3
4,205,283 - DDA3937_RS18405 0.60 -0.6
4,205,283 - DDA3937_RS18405 0.60 -2.6
4,205,360 - DDA3937_RS18405 0.66 -2.4
4,205,578 + DDA3937_RS18405 0.83 -2.6
4,205,579 - DDA3937_RS18405 0.83 -3.6
4,205,720 + -3.8
4,205,720 + -3.7
4,205,720 + -0.8
4,205,721 - -3.0
4,205,721 - -3.3
4,205,785 + -3.1
4,205,786 - -3.9
4,205,786 - -3.3
4,205,786 - -2.6
4,205,840 + -1.6
4,205,840 + -1.8
4,205,841 - +0.4
4,205,841 - -2.3
4,205,841 - -2.6
4,205,841 - -3.4
4,205,841 - -2.5
4,205,841 - -0.5
4,205,870 - -2.2
4,205,870 - -1.3
4,205,915 + DDA3937_RS18410 0.12 -0.4
4,205,915 + DDA3937_RS18410 0.12 -3.1
4,205,915 + DDA3937_RS18410 0.12 -3.0
4,205,915 + DDA3937_RS18410 0.12 +0.2
4,205,916 - DDA3937_RS18410 0.13 -0.5
4,205,916 - DDA3937_RS18410 0.13 -3.7
4,206,029 - DDA3937_RS18410 0.25 -3.7
4,206,145 + DDA3937_RS18410 0.37 -3.4
4,206,146 - DDA3937_RS18410 0.37 -1.3
4,206,311 - -0.4
4,206,532 + DDA3937_RS18410 0.79 -2.5
4,206,532 + DDA3937_RS18410 0.79 -3.2
4,206,533 - DDA3937_RS18410 0.79 -1.1
4,206,533 - DDA3937_RS18410 0.79 -2.0
4,206,533 - DDA3937_RS18410 0.79 -3.1
4,206,596 + DDA3937_RS18410 0.86 -1.8
4,206,791 + -1.1

Or see this region's nucleotide sequence