Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18305 and DDA3937_RS18310 are separated by 92 nucleotides DDA3937_RS18310 and DDA3937_RS18315 are separated by 453 nucleotides
DDA3937_RS18305: DDA3937_RS18305 - carbamoyl-phosphate synthase large subunit, at 4,178,737 to 4,181,961
_RS18305
DDA3937_RS18310: DDA3937_RS18310 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 4,182,054 to 4,183,199
_RS18310
DDA3937_RS18315: DDA3937_RS18315 - 4-hydroxy-tetrahydrodipicolinate reductase, at 4,183,653 to 4,184,474
_RS18315
Position (kb) 4182
4183
4184 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 4181.150 kb on - strand, within DDA3937_RS18305 at 4181.181 kb on - strand, within DDA3937_RS18305 at 4181.316 kb on - strand, within DDA3937_RS18305 at 4181.415 kb on - strand, within DDA3937_RS18305 at 4181.508 kb on + strand, within DDA3937_RS18305 at 4181.508 kb on + strand, within DDA3937_RS18305 at 4181.509 kb on - strand, within DDA3937_RS18305 at 4181.768 kb on + strand at 4181.768 kb on + strand at 4181.768 kb on + strand at 4181.768 kb on + strand at 4181.768 kb on + strand at 4181.768 kb on + strand at 4181.769 kb on - strand at 4181.769 kb on - strand at 4181.769 kb on - strand at 4181.769 kb on - strand at 4181.769 kb on - strand at 4181.859 kb on + strand at 4181.941 kb on + strand at 4181.942 kb on - strand at 4181.942 kb on - strand at 4181.942 kb on - strand at 4181.942 kb on - strand at 4181.984 kb on + strand at 4182.013 kb on + strand at 4182.022 kb on + strand at 4182.023 kb on - strand at 4182.023 kb on - strand at 4182.023 kb on - strand at 4182.026 kb on + strand at 4182.027 kb on - strand at 4182.027 kb on - strand at 4182.027 kb on - strand at 4182.040 kb on + strand at 4182.055 kb on + strand at 4182.055 kb on + strand at 4182.055 kb on + strand at 4182.056 kb on - strand at 4182.056 kb on - strand at 4182.071 kb on - strand at 4182.213 kb on - strand, within DDA3937_RS18310 at 4182.213 kb on - strand, within DDA3937_RS18310 at 4182.213 kb on - strand, within DDA3937_RS18310 at 4182.213 kb on - strand, within DDA3937_RS18310 at 4182.213 kb on - strand, within DDA3937_RS18310 at 4182.625 kb on + strand, within DDA3937_RS18310 at 4182.695 kb on + strand, within DDA3937_RS18310 at 4182.695 kb on + strand, within DDA3937_RS18310 at 4182.695 kb on + strand, within DDA3937_RS18310 at 4182.695 kb on + strand, within DDA3937_RS18310 at 4182.696 kb on - strand, within DDA3937_RS18310 at 4182.696 kb on - strand, within DDA3937_RS18310 at 4182.696 kb on - strand, within DDA3937_RS18310 at 4182.696 kb on - strand, within DDA3937_RS18310 at 4182.697 kb on + strand, within DDA3937_RS18310 at 4182.697 kb on + strand, within DDA3937_RS18310 at 4182.697 kb on + strand, within DDA3937_RS18310 at 4182.697 kb on + strand, within DDA3937_RS18310 at 4182.697 kb on + strand, within DDA3937_RS18310 at 4182.697 kb on + strand, within DDA3937_RS18310 at 4182.697 kb on + strand, within DDA3937_RS18310 at 4182.697 kb on + strand, within DDA3937_RS18310 at 4182.697 kb on + strand, within DDA3937_RS18310 at 4182.698 kb on - strand, within DDA3937_RS18310 at 4182.698 kb on - strand, within DDA3937_RS18310 at 4182.698 kb on - strand, within DDA3937_RS18310 at 4182.698 kb on - strand, within DDA3937_RS18310 at 4182.698 kb on - strand, within DDA3937_RS18310 at 4182.698 kb on - strand, within DDA3937_RS18310 at 4182.698 kb on - strand, within DDA3937_RS18310 at 4182.926 kb on - strand, within DDA3937_RS18310 at 4182.946 kb on - strand, within DDA3937_RS18310 at 4182.946 kb on - strand, within DDA3937_RS18310 at 4183.030 kb on + strand, within DDA3937_RS18310 at 4183.031 kb on - strand, within DDA3937_RS18310 at 4183.031 kb on - strand, within DDA3937_RS18310 at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.034 kb on + strand at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.034 kb on + strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.035 kb on - strand, within DDA3937_RS18310 at 4183.057 kb on + strand, within DDA3937_RS18310 at 4183.058 kb on - strand, within DDA3937_RS18310 at 4183.058 kb on - strand, within DDA3937_RS18310 at 4183.058 kb on - strand, within DDA3937_RS18310 at 4183.101 kb on - strand at 4183.259 kb on + strand at 4183.259 kb on + strand at 4183.259 kb on + strand at 4183.259 kb on + strand at 4183.259 kb on + strand at 4183.259 kb on + strand at 4183.259 kb on + strand at 4183.260 kb on - strand at 4183.260 kb on - strand at 4183.260 kb on - strand at 4183.260 kb on - strand at 4183.260 kb on - strand at 4183.260 kb on - strand at 4183.260 kb on - strand at 4183.260 kb on - strand at 4183.282 kb on + strand at 4183.282 kb on + strand at 4183.283 kb on - strand at 4183.283 kb on - strand at 4183.283 kb on - strand at 4183.330 kb on + strand at 4183.330 kb on + strand at 4183.330 kb on + strand at 4183.331 kb on - strand at 4183.337 kb on + strand at 4183.337 kb on + strand at 4183.337 kb on + strand at 4183.374 kb on - strand at 4183.381 kb on + strand at 4183.453 kb on + strand at 4183.454 kb on - strand at 4183.454 kb on - strand at 4183.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,181,150 - DDA3937_RS18305 0.75 -0.2 4,181,181 - DDA3937_RS18305 0.76 -1.9 4,181,316 - DDA3937_RS18305 0.80 -1.8 4,181,415 - DDA3937_RS18305 0.83 -2.0 4,181,508 + DDA3937_RS18305 0.86 -3.3 4,181,508 + DDA3937_RS18305 0.86 -2.2 4,181,509 - DDA3937_RS18305 0.86 -2.2 4,181,768 + -1.4 4,181,768 + -0.5 4,181,768 + -2.6 4,181,768 + -1.4 4,181,768 + -2.1 4,181,768 + -2.1 4,181,769 - -2.7 4,181,769 - -0.1 4,181,769 - -2.1 4,181,769 - -2.4 4,181,769 - -3.0 4,181,859 + -2.1 4,181,941 + -1.6 4,181,942 - -1.1 4,181,942 - -2.3 4,181,942 - -0.8 4,181,942 - -2.8 4,181,984 + -1.9 4,182,013 + -4.0 4,182,022 + -2.3 4,182,023 - +0.3 4,182,023 - -0.6 4,182,023 - -0.8 4,182,026 + -3.8 4,182,027 - -2.7 4,182,027 - -1.2 4,182,027 - +0.9 4,182,040 + +1.2 4,182,055 + -3.4 4,182,055 + -2.9 4,182,055 + -3.3 4,182,056 - +0.5 4,182,056 - -1.1 4,182,071 - +2.0 4,182,213 - DDA3937_RS18310 0.14 +0.2 4,182,213 - DDA3937_RS18310 0.14 -2.0 4,182,213 - DDA3937_RS18310 0.14 -2.4 4,182,213 - DDA3937_RS18310 0.14 -0.8 4,182,213 - DDA3937_RS18310 0.14 -1.7 4,182,625 + DDA3937_RS18310 0.50 -3.9 4,182,695 + DDA3937_RS18310 0.56 -3.0 4,182,695 + DDA3937_RS18310 0.56 -1.9 4,182,695 + DDA3937_RS18310 0.56 +1.1 4,182,695 + DDA3937_RS18310 0.56 -2.0 4,182,696 - DDA3937_RS18310 0.56 -1.4 4,182,696 - DDA3937_RS18310 0.56 +0.7 4,182,696 - DDA3937_RS18310 0.56 -3.5 4,182,696 - DDA3937_RS18310 0.56 -2.1 4,182,697 + DDA3937_RS18310 0.56 -3.5 4,182,697 + DDA3937_RS18310 0.56 -2.7 4,182,697 + DDA3937_RS18310 0.56 -1.1 4,182,697 + DDA3937_RS18310 0.56 -4.2 4,182,697 + DDA3937_RS18310 0.56 +0.0 4,182,697 + DDA3937_RS18310 0.56 -2.1 4,182,697 + DDA3937_RS18310 0.56 +3.2 4,182,697 + DDA3937_RS18310 0.56 -3.9 4,182,697 + DDA3937_RS18310 0.56 -5.1 4,182,698 - DDA3937_RS18310 0.56 -3.1 4,182,698 - DDA3937_RS18310 0.56 -2.3 4,182,698 - DDA3937_RS18310 0.56 -1.4 4,182,698 - DDA3937_RS18310 0.56 -0.1 4,182,698 - DDA3937_RS18310 0.56 -1.6 4,182,698 - DDA3937_RS18310 0.56 -2.8 4,182,698 - DDA3937_RS18310 0.56 -5.4 4,182,926 - DDA3937_RS18310 0.76 -1.9 4,182,946 - DDA3937_RS18310 0.78 -4.7 4,182,946 - DDA3937_RS18310 0.78 -3.5 4,183,030 + DDA3937_RS18310 0.85 -3.4 4,183,031 - DDA3937_RS18310 0.85 +0.0 4,183,031 - DDA3937_RS18310 0.85 -1.4 4,183,034 + DDA3937_RS18310 0.86 -1.4 4,183,034 + DDA3937_RS18310 0.86 -1.6 4,183,034 + DDA3937_RS18310 0.86 -2.4 4,183,034 + -1.4 4,183,034 + DDA3937_RS18310 0.86 -2.3 4,183,034 + DDA3937_RS18310 0.86 -1.1 4,183,034 + DDA3937_RS18310 0.86 -3.1 4,183,034 + DDA3937_RS18310 0.86 -2.0 4,183,034 + DDA3937_RS18310 0.86 -2.1 4,183,034 + DDA3937_RS18310 0.86 -3.0 4,183,034 + DDA3937_RS18310 0.86 -0.1 4,183,034 + DDA3937_RS18310 0.86 -1.4 4,183,034 + DDA3937_RS18310 0.86 +1.8 4,183,035 - DDA3937_RS18310 0.86 -1.4 4,183,035 - DDA3937_RS18310 0.86 -3.5 4,183,035 - DDA3937_RS18310 0.86 -2.5 4,183,035 - DDA3937_RS18310 0.86 -1.7 4,183,035 - DDA3937_RS18310 0.86 -3.5 4,183,035 - DDA3937_RS18310 0.86 -3.3 4,183,035 - DDA3937_RS18310 0.86 -2.5 4,183,035 - DDA3937_RS18310 0.86 -2.3 4,183,035 - DDA3937_RS18310 0.86 -0.8 4,183,035 - DDA3937_RS18310 0.86 -0.2 4,183,035 - DDA3937_RS18310 0.86 -4.2 4,183,035 - DDA3937_RS18310 0.86 -0.5 4,183,035 - DDA3937_RS18310 0.86 -1.8 4,183,057 + DDA3937_RS18310 0.88 -0.8 4,183,058 - DDA3937_RS18310 0.88 -2.0 4,183,058 - DDA3937_RS18310 0.88 -4.0 4,183,058 - DDA3937_RS18310 0.88 -2.0 4,183,101 - -2.4 4,183,259 + -1.4 4,183,259 + -0.8 4,183,259 + -3.8 4,183,259 + +0.2 4,183,259 + -2.1 4,183,259 + -3.5 4,183,259 + -1.3 4,183,260 - +0.1 4,183,260 - -0.1 4,183,260 - -2.3 4,183,260 - -0.2 4,183,260 - -0.2 4,183,260 - -1.0 4,183,260 - -0.4 4,183,260 - +1.4 4,183,282 + -2.7 4,183,282 + +0.2 4,183,283 - -0.1 4,183,283 - -0.1 4,183,283 - -0.3 4,183,330 + -1.3 4,183,330 + -2.0 4,183,330 + -0.3 4,183,331 - +0.2 4,183,337 + +2.7 4,183,337 + -0.2 4,183,337 + +0.3 4,183,374 - +1.2 4,183,381 + +1.5 4,183,453 + +0.6 4,183,454 - -0.3 4,183,454 - +0.4 4,183,644 - +0.7
Or see this region's nucleotide sequence