Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18305

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,177,772	+		DDA3937_RS18295	0.89	-0.6
4,177,772	+		DDA3937_RS18295	0.89	-0.7
4,177,772	+		DDA3937_RS18295	0.89	-1.0
4,177,772	+		DDA3937_RS18295	0.89	+0.5
4,177,772	+		DDA3937_RS18295	0.89	+0.2
4,177,772	+		DDA3937_RS18295	0.89	-0.1
4,177,772	+		DDA3937_RS18295	0.89	+0.7
4,177,772	+		DDA3937_RS18295	0.89	-0.4
4,177,773	-		DDA3937_RS18295	0.89	+0.1
4,177,773	-		DDA3937_RS18295	0.89	-1.0
4,177,773	-		DDA3937_RS18295	0.89	-0.9
4,177,773	-		DDA3937_RS18295	0.89	+0.1
4,177,773	-		DDA3937_RS18295	0.89	+0.5
4,177,773	-		DDA3937_RS18295	0.89	-1.2
4,177,773	-		DDA3937_RS18295	0.89	-0.1
4,177,773	-		DDA3937_RS18295	0.89	+1.5
4,177,773	-		DDA3937_RS18295	0.89	+1.0
4,177,791	+				-0.6
4,177,827	-				-0.3
4,177,827	-				-0.3
4,177,829	+				+0.4
4,177,829	+				-1.3
4,177,830	-				+1.4
4,177,855	-				+1.0
4,177,855	-				-0.4
4,177,862	+				-3.4
4,177,862	+				+1.5
4,177,862	+				-0.5
4,177,862	+				+0.5
4,177,862	+				-0.2
4,177,863	-				-0.3
4,177,863	-				-0.9
4,177,863	-				-0.6
4,177,863	-				+0.0
4,177,863	-				+0.9
4,177,863	-				-1.8
4,177,863	-				-1.0
4,177,863	-				+1.0
4,177,863	-				-1.5
4,177,886	+				-0.6
4,177,886	+				+0.7
4,177,887	-				+0.5
4,177,887	-				-0.8
4,177,887	-				+0.4
4,177,887	-				-0.4
4,177,887	-				-1.6
4,177,887	-				-0.1
4,177,887	-				-1.4
4,177,887	-				-0.2
4,177,887	-				-1.3
4,177,895	+				-1.1
4,177,895	+				-0.1
4,177,895	+				-0.8
4,177,896	-				-1.8
4,177,896	-				-1.0
4,177,896	-				-1.0
4,177,896	-				-1.1
4,177,897	+				-0.6
4,177,897	+				-0.3
4,177,897	+				+0.9
4,177,898	-				+0.4
4,177,912	+				-0.6
4,177,918	+				-0.1
4,177,918	+				-0.2
4,177,918	+				-1.6
4,177,969	+				-0.9
4,177,972	+				-0.1
4,177,973	-				-0.4
4,177,973	-				+0.1
4,178,094	+		DDA3937_RS18300	0.12	+0.5
4,178,094	+		DDA3937_RS18300	0.12	+0.0
4,178,094	+		DDA3937_RS18300	0.12	-0.1
4,178,184	-		DDA3937_RS18300	0.27	-1.4
4,178,246	+		DDA3937_RS18300	0.37	-0.2
4,178,246	+		DDA3937_RS18300	0.37	+2.4
4,178,247	-		DDA3937_RS18300	0.37	-0.9
4,178,262	-		DDA3937_RS18300	0.39	+0.5
4,178,350	-		DDA3937_RS18300	0.53	+0.6
4,178,471	+		DDA3937_RS18300	0.73	-1.4
4,178,472	-		DDA3937_RS18300	0.73	+0.1
4,178,633	+				-0.6
4,178,633	+				+1.0
4,178,634	-				-0.9
4,178,634	-				+0.5
4,178,652	-				+0.7
4,178,676	+				-0.4
4,178,731	+				+1.7
4,178,843	+				-1.6
4,178,853	+				-1.0
4,178,853	+				-3.7
4,178,853	+				-1.9
4,178,853	+				-2.4
4,178,853	+				-1.6
4,178,853	+				-0.9
4,178,853	+				-3.3
4,178,853	+				-1.4
4,178,853	+				-3.0
4,178,853	+				-0.9
4,178,853	+				-5.7
4,178,854	-				-0.7
4,178,854	-				-3.8
4,178,854	-				-3.1
4,178,854	-				-1.8
4,178,854	-				-1.6
4,178,854	-				-3.4
4,178,854	-				-3.3
4,178,854	-				-4.2
4,178,854	-				-2.9
4,178,854	-				-1.0
4,178,854	-				-1.4
4,178,855	+				-2.0
4,178,855	+				-2.0
4,178,855	+				-2.8
4,178,856	-				-1.4
4,178,856	-				-3.2
4,178,926	-				+2.1
4,178,927	+				-1.3
4,178,927	+				-2.9
4,178,927	+				+0.1
4,178,927	+				-2.9
4,178,927	+				-3.4
4,178,927	+				-1.1
4,178,927	+				-3.0
4,178,928	-				-3.0
4,178,928	-				+1.2
4,178,928	-				-2.0
4,178,928	-				-1.1
4,178,928	-				-1.4
4,178,928	-				-3.4
4,178,928	-				-3.3
4,178,928	-				-3.5
4,178,928	-				-1.8
4,178,928	-				-2.7
4,178,928	-				-1.0
4,178,933	+				-2.0
4,178,933	+				-1.4
4,178,933	+				-1.4
4,178,933	+				-2.3
4,178,934	-				-2.4
4,178,934	-				-2.9
4,178,934	-				-2.0
4,178,934	-				-1.8
4,178,934	-				-1.2
4,178,934	-				-0.7
4,179,075	+		DDA3937_RS18305	0.10	-1.3
4,179,299	+		DDA3937_RS18305	0.17	-2.7
4,179,299	+		DDA3937_RS18305	0.17	-2.3
4,179,300	-		DDA3937_RS18305	0.17	-4.0
4,179,300	-		DDA3937_RS18305	0.17	-1.4
4,179,566	+		DDA3937_RS18305	0.26	-2.3
4,179,566	+		DDA3937_RS18305	0.26	-2.9
4,179,618	+		DDA3937_RS18305	0.27	-2.9
4,179,618	+		DDA3937_RS18305	0.27	-0.9
4,179,618	+		DDA3937_RS18305	0.27	-2.7
4,179,619	-		DDA3937_RS18305	0.27	-2.8
4,179,752	+		DDA3937_RS18305	0.31	-1.1
4,179,753	-		DDA3937_RS18305	0.32	-3.0
4,179,809	+		DDA3937_RS18305	0.33	-3.9
4,179,809	+		DDA3937_RS18305	0.33	-2.7
4,179,809	+				-1.1
4,179,809	+		DDA3937_RS18305	0.33	-3.0
4,179,809	+		DDA3937_RS18305	0.33	-2.8
4,179,809	+				+0.2
4,179,809	+		DDA3937_RS18305	0.33	-1.9
4,179,809	+		DDA3937_RS18305	0.33	-2.6
4,179,810	-		DDA3937_RS18305	0.33	-2.9
4,179,810	-		DDA3937_RS18305	0.33	-2.0
4,179,810	-		DDA3937_RS18305	0.33	-2.4
4,179,810	-		DDA3937_RS18305	0.33	-0.8
4,179,810	-		DDA3937_RS18305	0.33	-3.9
4,179,820	+		DDA3937_RS18305	0.34	-2.6
4,179,821	-		DDA3937_RS18305	0.34	-0.1
4,179,821	-		DDA3937_RS18305	0.34	-3.0
4,180,112	+		DDA3937_RS18305	0.43	-1.7
4,180,113	-		DDA3937_RS18305	0.43	-2.0
4,180,113	-		DDA3937_RS18305	0.43	-2.1
4,180,113	-		DDA3937_RS18305	0.43	-1.1
4,180,113	-				-0.8
4,180,322	+		DDA3937_RS18305	0.49	-1.3
4,180,322	+		DDA3937_RS18305	0.49	-1.4
4,180,322	+		DDA3937_RS18305	0.49	-1.9
4,180,323	-		DDA3937_RS18305	0.49	-3.8
4,180,323	-		DDA3937_RS18305	0.49	-1.1
4,180,323	-		DDA3937_RS18305	0.49	-2.1
4,180,323	-		DDA3937_RS18305	0.49	-1.6
4,180,323	-		DDA3937_RS18305	0.49	-2.2
4,180,331	+		DDA3937_RS18305	0.49	-1.0
4,180,331	+		DDA3937_RS18305	0.49	-0.9
4,180,331	+		DDA3937_RS18305	0.49	-1.9
4,180,331	+		DDA3937_RS18305	0.49	-2.9
4,180,331	+		DDA3937_RS18305	0.49	-2.3
4,180,331	+		DDA3937_RS18305	0.49	-1.6
4,180,331	+		DDA3937_RS18305	0.49	-0.2
4,180,331	+		DDA3937_RS18305	0.49	-2.8
4,180,331	+		DDA3937_RS18305	0.49	-3.4
4,180,332	-		DDA3937_RS18305	0.49	-3.4
4,180,332	-		DDA3937_RS18305	0.49	-2.8
4,180,332	-		DDA3937_RS18305	0.49	-2.9
4,180,332	-		DDA3937_RS18305	0.49	-1.8
4,180,332	-		DDA3937_RS18305	0.49	-3.4
4,180,337	+		DDA3937_RS18305	0.50	-4.0
4,180,338	-		DDA3937_RS18305	0.50	-3.3
4,180,338	-		DDA3937_RS18305	0.50	-1.9
4,180,385	+		DDA3937_RS18305	0.51	-4.3
4,180,386	-		DDA3937_RS18305	0.51	-2.1
4,180,403	+		DDA3937_RS18305	0.52	-3.0
4,180,403	+		DDA3937_RS18305	0.52	-2.9
4,180,404	-		DDA3937_RS18305	0.52	-2.4
4,180,649	+		DDA3937_RS18305	0.59	-2.1
4,180,656	+		DDA3937_RS18305	0.60	-1.5
4,180,656	+		DDA3937_RS18305	0.60	-0.5
4,180,656	+		DDA3937_RS18305	0.60	-3.2
4,180,902	-		DDA3937_RS18305	0.67	-2.4
4,180,902	-		DDA3937_RS18305	0.67	-2.3
4,180,902	-		DDA3937_RS18305	0.67	-2.2
4,180,971	+		DDA3937_RS18305	0.69	-2.4
4,180,971	+		DDA3937_RS18305	0.69	-1.4
4,180,972	-		DDA3937_RS18305	0.69	-4.0
4,180,972	-		DDA3937_RS18305	0.69	-2.1
4,180,972	-		DDA3937_RS18305	0.69	-1.4
4,180,974	-		DDA3937_RS18305	0.69	-3.0
4,181,150	-		DDA3937_RS18305	0.75	-0.2
4,181,181	-		DDA3937_RS18305	0.76	-1.9
4,181,316	-		DDA3937_RS18305	0.80	-1.8
4,181,415	-		DDA3937_RS18305	0.83	-2.0
4,181,508	+		DDA3937_RS18305	0.86	-3.3
4,181,508	+		DDA3937_RS18305	0.86	-2.2
4,181,509	-		DDA3937_RS18305	0.86	-2.2
4,181,768	+				-1.4
4,181,768	+				-0.5
4,181,768	+				-2.6
4,181,768	+				-1.4
4,181,768	+				-2.1
4,181,768	+				-2.1
4,181,769	-				-2.7
4,181,769	-				-0.1
4,181,769	-				-2.1
4,181,769	-				-2.4
4,181,769	-				-3.0
4,181,859	+				-2.1
4,181,941	+				-1.6
4,181,942	-				-1.1
4,181,942	-				-2.3
4,181,942	-				-0.8
4,181,942	-				-2.8
4,181,984	+				-1.9
4,182,013	+				-4.0
4,182,022	+				-2.3
4,182,023	-				+0.3
4,182,023	-				-0.6
4,182,023	-				-0.8
4,182,026	+				-3.8
4,182,027	-				-2.7
4,182,027	-				-1.2
4,182,027	-				+0.9
4,182,040	+				+1.2
4,182,055	+				-3.4
4,182,055	+				-2.9
4,182,055	+				-3.3
4,182,056	-				+0.5
4,182,056	-				-1.1
4,182,071	-				+2.0
4,182,213	-		DDA3937_RS18310	0.14	+0.2
4,182,213	-		DDA3937_RS18310	0.14	-2.0
4,182,213	-		DDA3937_RS18310	0.14	-2.4
4,182,213	-		DDA3937_RS18310	0.14	-0.8
4,182,213	-		DDA3937_RS18310	0.14	-1.7
4,182,625	+		DDA3937_RS18310	0.50	-3.9
4,182,695	+		DDA3937_RS18310	0.56	-3.0
4,182,695	+		DDA3937_RS18310	0.56	-1.9
4,182,695	+		DDA3937_RS18310	0.56	+1.1
4,182,695	+		DDA3937_RS18310	0.56	-2.0
4,182,696	-		DDA3937_RS18310	0.56	-1.4
4,182,696	-		DDA3937_RS18310	0.56	+0.7
4,182,696	-		DDA3937_RS18310	0.56	-3.5
4,182,696	-		DDA3937_RS18310	0.56	-2.1
4,182,697	+		DDA3937_RS18310	0.56	-3.5
4,182,697	+		DDA3937_RS18310	0.56	-2.7
4,182,697	+		DDA3937_RS18310	0.56	-1.1
4,182,697	+		DDA3937_RS18310	0.56	-4.2
4,182,697	+		DDA3937_RS18310	0.56	+0.0
4,182,697	+		DDA3937_RS18310	0.56	-2.1
4,182,697	+		DDA3937_RS18310	0.56	+3.2
4,182,697	+		DDA3937_RS18310	0.56	-3.9
4,182,697	+		DDA3937_RS18310	0.56	-5.1
4,182,698	-		DDA3937_RS18310	0.56	-3.1
4,182,698	-		DDA3937_RS18310	0.56	-2.3
4,182,698	-		DDA3937_RS18310	0.56	-1.4
4,182,698	-		DDA3937_RS18310	0.56	-0.1
4,182,698	-		DDA3937_RS18310	0.56	-1.6
4,182,698	-		DDA3937_RS18310	0.56	-2.8
4,182,698	-		DDA3937_RS18310	0.56	-5.4
4,182,926	-		DDA3937_RS18310	0.76	-1.9
4,182,946	-		DDA3937_RS18310	0.78	-4.7
4,182,946	-		DDA3937_RS18310	0.78	-3.5