Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18285 and DDA3937_RS18290 are separated by 110 nucleotides DDA3937_RS18290 and DDA3937_RS18295 overlap by 16 nucleotides DDA3937_RS18295 and DDA3937_RS18300 are separated by 161 nucleotides DDA3937_RS18300 and DDA3937_RS18305 are separated by 101 nucleotides
DDA3937_RS18285: DDA3937_RS18285 - type 3 dihydrofolate reductase, at 4,176,032 to 4,176,511
_RS18285
DDA3937_RS18290: DDA3937_RS18290 - threonine/serine exporter, at 4,176,622 to 4,177,092
_RS18290
DDA3937_RS18295: DDA3937_RS18295 - threonine/serine exporter ThrE family protein, at 4,177,077 to 4,177,859
_RS18295
DDA3937_RS18300: DDA3937_RS18300 - LysE family translocator, at 4,178,021 to 4,178,635
_RS18300
DDA3937_RS18305: DDA3937_RS18305 - carbamoyl-phosphate synthase large subunit, at 4,178,737 to 4,181,961
_RS18305
Position (kb) 4177
4178 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 4176.217 kb on + strand, within DDA3937_RS18285 at 4176.518 kb on - strand at 4176.532 kb on + strand at 4176.549 kb on + strand at 4176.549 kb on + strand at 4176.550 kb on - strand at 4176.550 kb on - strand at 4176.551 kb on + strand at 4176.552 kb on - strand at 4176.552 kb on - strand at 4176.576 kb on + strand at 4176.576 kb on + strand at 4176.600 kb on + strand at 4176.604 kb on + strand at 4176.605 kb on - strand at 4176.623 kb on + strand at 4176.623 kb on + strand at 4176.623 kb on + strand at 4176.625 kb on + strand at 4176.625 kb on + strand at 4176.626 kb on - strand at 4176.626 kb on - strand at 4176.640 kb on - strand at 4176.640 kb on - strand at 4176.668 kb on - strand at 4176.694 kb on - strand, within DDA3937_RS18290 at 4176.694 kb on - strand, within DDA3937_RS18290 at 4176.747 kb on - strand, within DDA3937_RS18290 at 4176.747 kb on - strand, within DDA3937_RS18290 at 4176.789 kb on - strand, within DDA3937_RS18290 at 4176.789 kb on - strand, within DDA3937_RS18290 at 4176.798 kb on + strand, within DDA3937_RS18290 at 4176.831 kb on + strand, within DDA3937_RS18290 at 4176.873 kb on + strand, within DDA3937_RS18290 at 4176.883 kb on - strand, within DDA3937_RS18290 at 4176.935 kb on + strand, within DDA3937_RS18290 at 4176.953 kb on - strand, within DDA3937_RS18290 at 4177.012 kb on - strand, within DDA3937_RS18290 at 4177.015 kb on + strand, within DDA3937_RS18290 at 4177.015 kb on + strand, within DDA3937_RS18290 at 4177.016 kb on - strand, within DDA3937_RS18290 at 4177.016 kb on - strand, within DDA3937_RS18290 at 4177.021 kb on - strand, within DDA3937_RS18290 at 4177.134 kb on - strand at 4177.205 kb on + strand, within DDA3937_RS18295 at 4177.206 kb on - strand, within DDA3937_RS18295 at 4177.248 kb on + strand, within DDA3937_RS18295 at 4177.353 kb on - strand, within DDA3937_RS18295 at 4177.396 kb on + strand, within DDA3937_RS18295 at 4177.396 kb on + strand, within DDA3937_RS18295 at 4177.396 kb on + strand, within DDA3937_RS18295 at 4177.396 kb on + strand, within DDA3937_RS18295 at 4177.396 kb on + strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.397 kb on - strand, within DDA3937_RS18295 at 4177.530 kb on - strand, within DDA3937_RS18295 at 4177.571 kb on + strand at 4177.571 kb on + strand, within DDA3937_RS18295 at 4177.571 kb on + strand, within DDA3937_RS18295 at 4177.571 kb on + strand, within DDA3937_RS18295 at 4177.572 kb on - strand, within DDA3937_RS18295 at 4177.572 kb on - strand, within DDA3937_RS18295 at 4177.572 kb on - strand, within DDA3937_RS18295 at 4177.572 kb on - strand, within DDA3937_RS18295 at 4177.572 kb on - strand, within DDA3937_RS18295 at 4177.619 kb on + strand, within DDA3937_RS18295 at 4177.619 kb on + strand, within DDA3937_RS18295 at 4177.619 kb on + strand, within DDA3937_RS18295 at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.620 kb on - strand at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.620 kb on - strand, within DDA3937_RS18295 at 4177.721 kb on + strand, within DDA3937_RS18295 at 4177.721 kb on + strand, within DDA3937_RS18295 at 4177.722 kb on - strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.772 kb on + strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.773 kb on - strand, within DDA3937_RS18295 at 4177.791 kb on + strand at 4177.827 kb on - strand at 4177.827 kb on - strand at 4177.829 kb on + strand at 4177.829 kb on + strand at 4177.830 kb on - strand at 4177.855 kb on - strand at 4177.855 kb on - strand at 4177.862 kb on + strand at 4177.862 kb on + strand at 4177.862 kb on + strand at 4177.862 kb on + strand at 4177.862 kb on + strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.863 kb on - strand at 4177.886 kb on + strand at 4177.886 kb on + strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.887 kb on - strand at 4177.895 kb on + strand at 4177.895 kb on + strand at 4177.895 kb on + strand at 4177.896 kb on - strand at 4177.896 kb on - strand at 4177.896 kb on - strand at 4177.896 kb on - strand at 4177.897 kb on + strand at 4177.897 kb on + strand at 4177.897 kb on + strand at 4177.898 kb on - strand at 4177.912 kb on + strand at 4177.918 kb on + strand at 4177.918 kb on + strand at 4177.918 kb on + strand at 4177.969 kb on + strand at 4177.972 kb on + strand at 4177.973 kb on - strand at 4177.973 kb on - strand at 4178.094 kb on + strand, within DDA3937_RS18300 at 4178.094 kb on + strand, within DDA3937_RS18300 at 4178.094 kb on + strand, within DDA3937_RS18300 at 4178.184 kb on - strand, within DDA3937_RS18300 at 4178.246 kb on + strand, within DDA3937_RS18300 at 4178.246 kb on + strand, within DDA3937_RS18300 at 4178.247 kb on - strand, within DDA3937_RS18300 at 4178.262 kb on - strand, within DDA3937_RS18300 at 4178.350 kb on - strand, within DDA3937_RS18300 at 4178.471 kb on + strand, within DDA3937_RS18300 at 4178.472 kb on - strand, within DDA3937_RS18300 at 4178.633 kb on + strand at 4178.633 kb on + strand at 4178.634 kb on - strand at 4178.634 kb on - strand at 4178.652 kb on - strand at 4178.676 kb on + strand at 4178.731 kb on + strand at 4178.843 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.853 kb on + strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.854 kb on - strand at 4178.855 kb on + strand at 4178.855 kb on + strand at 4178.855 kb on + strand at 4178.856 kb on - strand at 4178.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,176,217 + DDA3937_RS18285 0.39 +1.2 4,176,518 - -2.4 4,176,532 + -1.1 4,176,549 + -2.6 4,176,549 + -0.8 4,176,550 - +0.1 4,176,550 - +1.8 4,176,551 + -1.8 4,176,552 - -1.1 4,176,552 - -0.4 4,176,576 + -0.2 4,176,576 + -0.4 4,176,600 + +0.6 4,176,604 + -0.2 4,176,605 - -0.3 4,176,623 + -1.9 4,176,623 + +0.6 4,176,623 + -1.4 4,176,625 + +0.7 4,176,625 + +1.0 4,176,626 - -0.2 4,176,626 - +0.4 4,176,640 - +0.7 4,176,640 - -0.5 4,176,668 - -1.4 4,176,694 - DDA3937_RS18290 0.15 -2.4 4,176,694 - DDA3937_RS18290 0.15 +1.2 4,176,747 - DDA3937_RS18290 0.27 -1.8 4,176,747 - DDA3937_RS18290 0.27 -0.1 4,176,789 - DDA3937_RS18290 0.35 +1.9 4,176,789 - DDA3937_RS18290 0.35 -0.8 4,176,798 + DDA3937_RS18290 0.37 -1.0 4,176,831 + DDA3937_RS18290 0.44 -0.4 4,176,873 + DDA3937_RS18290 0.53 -0.2 4,176,883 - DDA3937_RS18290 0.55 -1.2 4,176,935 + DDA3937_RS18290 0.66 -0.4 4,176,953 - DDA3937_RS18290 0.70 -1.7 4,177,012 - DDA3937_RS18290 0.83 -0.4 4,177,015 + DDA3937_RS18290 0.83 -0.6 4,177,015 + DDA3937_RS18290 0.83 +1.2 4,177,016 - DDA3937_RS18290 0.84 -0.3 4,177,016 - DDA3937_RS18290 0.84 -1.5 4,177,021 - DDA3937_RS18290 0.85 +1.2 4,177,134 - -2.7 4,177,205 + DDA3937_RS18295 0.16 +3.5 4,177,206 - DDA3937_RS18295 0.16 -2.1 4,177,248 + DDA3937_RS18295 0.22 +0.1 4,177,353 - DDA3937_RS18295 0.35 +0.9 4,177,396 + DDA3937_RS18295 0.41 -0.2 4,177,396 + DDA3937_RS18295 0.41 -0.4 4,177,396 + DDA3937_RS18295 0.41 -0.6 4,177,396 + DDA3937_RS18295 0.41 -1.1 4,177,396 + DDA3937_RS18295 0.41 -1.4 4,177,397 - DDA3937_RS18295 0.41 -0.7 4,177,397 - DDA3937_RS18295 0.41 +0.7 4,177,397 - DDA3937_RS18295 0.41 -0.5 4,177,397 - DDA3937_RS18295 0.41 -1.5 4,177,397 - DDA3937_RS18295 0.41 -0.3 4,177,397 - DDA3937_RS18295 0.41 -1.1 4,177,397 - DDA3937_RS18295 0.41 -1.0 4,177,397 - DDA3937_RS18295 0.41 -0.2 4,177,397 - DDA3937_RS18295 0.41 +1.0 4,177,530 - DDA3937_RS18295 0.58 -0.9 4,177,571 + +2.2 4,177,571 + DDA3937_RS18295 0.63 +0.4 4,177,571 + DDA3937_RS18295 0.63 +3.0 4,177,571 + DDA3937_RS18295 0.63 -2.3 4,177,572 - DDA3937_RS18295 0.63 +0.5 4,177,572 - DDA3937_RS18295 0.63 +2.3 4,177,572 - DDA3937_RS18295 0.63 +0.1 4,177,572 - DDA3937_RS18295 0.63 +0.2 4,177,572 - DDA3937_RS18295 0.63 +1.4 4,177,619 + DDA3937_RS18295 0.69 +0.9 4,177,619 + DDA3937_RS18295 0.69 +0.7 4,177,619 + DDA3937_RS18295 0.69 -0.6 4,177,620 - DDA3937_RS18295 0.69 +0.5 4,177,620 - DDA3937_RS18295 0.69 -1.6 4,177,620 - DDA3937_RS18295 0.69 -0.4 4,177,620 - DDA3937_RS18295 0.69 -0.4 4,177,620 - -1.1 4,177,620 - DDA3937_RS18295 0.69 +0.4 4,177,620 - DDA3937_RS18295 0.69 -0.2 4,177,721 + DDA3937_RS18295 0.82 +1.0 4,177,721 + DDA3937_RS18295 0.82 -1.6 4,177,722 - DDA3937_RS18295 0.82 -0.3 4,177,772 + DDA3937_RS18295 0.89 -0.6 4,177,772 + DDA3937_RS18295 0.89 -0.7 4,177,772 + DDA3937_RS18295 0.89 -1.0 4,177,772 + DDA3937_RS18295 0.89 +0.5 4,177,772 + DDA3937_RS18295 0.89 +0.2 4,177,772 + DDA3937_RS18295 0.89 -0.1 4,177,772 + DDA3937_RS18295 0.89 +0.7 4,177,772 + DDA3937_RS18295 0.89 -0.4 4,177,773 - DDA3937_RS18295 0.89 +0.1 4,177,773 - DDA3937_RS18295 0.89 -1.0 4,177,773 - DDA3937_RS18295 0.89 -0.9 4,177,773 - DDA3937_RS18295 0.89 +0.1 4,177,773 - DDA3937_RS18295 0.89 +0.5 4,177,773 - DDA3937_RS18295 0.89 -1.2 4,177,773 - DDA3937_RS18295 0.89 -0.1 4,177,773 - DDA3937_RS18295 0.89 +1.5 4,177,773 - DDA3937_RS18295 0.89 +1.0 4,177,791 + -0.6 4,177,827 - -0.3 4,177,827 - -0.3 4,177,829 + +0.4 4,177,829 + -1.3 4,177,830 - +1.4 4,177,855 - +1.0 4,177,855 - -0.4 4,177,862 + -3.4 4,177,862 + +1.5 4,177,862 + -0.5 4,177,862 + +0.5 4,177,862 + -0.2 4,177,863 - -0.3 4,177,863 - -0.9 4,177,863 - -0.6 4,177,863 - +0.0 4,177,863 - +0.9 4,177,863 - -1.8 4,177,863 - -1.0 4,177,863 - +1.0 4,177,863 - -1.5 4,177,886 + -0.6 4,177,886 + +0.7 4,177,887 - +0.5 4,177,887 - -0.8 4,177,887 - +0.4 4,177,887 - -0.4 4,177,887 - -1.6 4,177,887 - -0.1 4,177,887 - -1.4 4,177,887 - -0.2 4,177,887 - -1.3 4,177,895 + -1.1 4,177,895 + -0.1 4,177,895 + -0.8 4,177,896 - -1.8 4,177,896 - -1.0 4,177,896 - -1.0 4,177,896 - -1.1 4,177,897 + -0.6 4,177,897 + -0.3 4,177,897 + +0.9 4,177,898 - +0.4 4,177,912 + -0.6 4,177,918 + -0.1 4,177,918 + -0.2 4,177,918 + -1.6 4,177,969 + -0.9 4,177,972 + -0.1 4,177,973 - -0.4 4,177,973 - +0.1 4,178,094 + DDA3937_RS18300 0.12 +0.5 4,178,094 + DDA3937_RS18300 0.12 +0.0 4,178,094 + DDA3937_RS18300 0.12 -0.1 4,178,184 - DDA3937_RS18300 0.27 -1.4 4,178,246 + DDA3937_RS18300 0.37 -0.2 4,178,246 + DDA3937_RS18300 0.37 +2.4 4,178,247 - DDA3937_RS18300 0.37 -0.9 4,178,262 - DDA3937_RS18300 0.39 +0.5 4,178,350 - DDA3937_RS18300 0.53 +0.6 4,178,471 + DDA3937_RS18300 0.73 -1.4 4,178,472 - DDA3937_RS18300 0.73 +0.1 4,178,633 + -0.6 4,178,633 + +1.0 4,178,634 - -0.9 4,178,634 - +0.5 4,178,652 - +0.7 4,178,676 + -0.4 4,178,731 + +1.7 4,178,843 + -1.6 4,178,853 + -1.0 4,178,853 + -3.7 4,178,853 + -1.9 4,178,853 + -2.4 4,178,853 + -1.6 4,178,853 + -0.9 4,178,853 + -3.3 4,178,853 + -1.4 4,178,853 + -3.0 4,178,853 + -0.9 4,178,853 + -5.7 4,178,854 - -0.7 4,178,854 - -3.8 4,178,854 - -3.1 4,178,854 - -1.8 4,178,854 - -1.6 4,178,854 - -3.4 4,178,854 - -3.3 4,178,854 - -4.2 4,178,854 - -2.9 4,178,854 - -1.0 4,178,854 - -1.4 4,178,855 + -2.0 4,178,855 + -2.0 4,178,855 + -2.8 4,178,856 - -1.4 4,178,856 - -3.2
Or see this region's nucleotide sequence