Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17180

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,914,894	-		DDA3937_RS17170	0.86	-0.3
3,914,920	+		DDA3937_RS17170	0.88	-0.7
3,914,920	+		DDA3937_RS17170	0.88	-1.5
3,914,921	-				+1.1
3,914,973	+				-0.4
3,914,973	+				+0.1
3,914,973	+				-1.2
3,915,001	+				-0.2
3,915,002	-				-1.2
3,915,002	-				-0.6
3,915,073	+				+0.2
3,915,073	+				-1.0
3,915,073	+				+0.3
3,915,103	+				-1.5
3,915,106	+				-0.4
3,915,107	-				+0.9
3,915,121	+				-0.2
3,915,122	-				-1.3
3,915,199	+		DDA3937_RS17175	0.13	+0.3
3,915,200	-		DDA3937_RS17175	0.14	+0.1
3,915,200	-		DDA3937_RS17175	0.14	+1.2
3,915,240	+		DDA3937_RS17175	0.33	-0.2
3,915,240	+		DDA3937_RS17175	0.33	+0.2
3,915,240	+		DDA3937_RS17175	0.33	+0.5
3,915,240	+		DDA3937_RS17175	0.33	+1.8
3,915,300	+		DDA3937_RS17175	0.62	-0.1
3,915,301	-		DDA3937_RS17175	0.62	-0.3
3,915,301	-		DDA3937_RS17175	0.62	+0.5
3,915,305	+		DDA3937_RS17175	0.64	-2.1
3,915,305	+		DDA3937_RS17175	0.64	+3.7
3,915,305	+		DDA3937_RS17175	0.64	-0.3
3,915,305	+		DDA3937_RS17175	0.64	+0.4
3,915,305	+		DDA3937_RS17175	0.64	+1.7
3,915,305	+		DDA3937_RS17175	0.64	-0.3
3,915,306	-		DDA3937_RS17175	0.65	+0.4
3,915,306	-		DDA3937_RS17175	0.65	+0.6
3,915,306	-		DDA3937_RS17175	0.65	-0.4
3,915,306	-		DDA3937_RS17175	0.65	-0.0
3,915,306	-		DDA3937_RS17175	0.65	-0.5
3,915,332	-		DDA3937_RS17175	0.77	+0.1
3,915,332	-		DDA3937_RS17175	0.77	-0.4
3,915,332	-		DDA3937_RS17175	0.77	+1.1
3,915,332	-		DDA3937_RS17175	0.77	+0.0
3,915,332	-		DDA3937_RS17175	0.77	+0.3
3,915,335	+		DDA3937_RS17175	0.79	+1.9
3,915,335	+		DDA3937_RS17175	0.79	-0.6
3,915,335	+		DDA3937_RS17175	0.79	+1.1
3,915,335	+		DDA3937_RS17175	0.79	-0.3
3,915,336	-		DDA3937_RS17175	0.79	-0.2
3,915,336	-		DDA3937_RS17175	0.79	+0.2
3,915,336	-		DDA3937_RS17175	0.79	+0.3
3,915,336	-		DDA3937_RS17175	0.79	-0.1
3,915,357	+		DDA3937_RS17175	0.89	+0.7
3,915,357	+		DDA3937_RS17175	0.89	+1.2
3,915,357	+		DDA3937_RS17175	0.89	-0.2
3,915,357	+		DDA3937_RS17175	0.89	-0.3
3,915,357	+		DDA3937_RS17175	0.89	+0.4
3,915,357	+		DDA3937_RS17175	0.89	-0.9
3,915,358	-				-0.5
3,915,358	-				-0.2
3,915,359	+				+0.1
3,915,359	+				-0.7
3,915,359	+				+1.3
3,915,359	+				+0.6
3,915,359	+				-0.4
3,915,359	+				+2.8
3,915,359	+				-1.5
3,915,359	+				+1.7
3,915,359	+				-0.4
3,915,359	+				+0.2
3,915,359	+				-1.1
3,915,359	+				+0.1
3,915,359	+				+0.6
3,915,359	+				+0.6
3,915,359	+				-0.1
3,915,359	+				+0.1
3,915,360	-				+0.1
3,915,360	-				+0.5
3,915,360	-				+0.1
3,915,360	-				+1.3
3,915,360	-				-0.2
3,915,360	-				-0.2
3,915,360	-				-0.7
3,915,360	-				-0.5
3,915,360	-				+0.8
3,915,360	-				+0.3
3,915,360	-				+0.1
3,915,360	-				+0.6
3,915,360	-				-0.3
3,915,360	-				-0.4
3,915,531	+				+0.4
3,915,552	+				-0.0
3,915,552	+				+1.6
3,915,552	+				+2.2
3,915,553	-				-0.6
3,915,565	+				+0.3
3,915,596	-				+0.4
3,915,602	+				-0.9
3,915,602	+				+1.5
3,915,603	-				-0.6
3,915,611	-				-0.1
3,915,612	+				+0.4
3,915,625	+				-0.6
3,915,676	-		DDA3937_RS23440	0.15	-0.6
3,915,693	+		DDA3937_RS23440	0.27	-0.5
3,915,693	+		DDA3937_RS23440	0.27	+0.5
3,915,693	+		DDA3937_RS23440	0.27	-1.1
3,915,704	+		DDA3937_RS23440	0.34	+1.2
3,915,704	+		DDA3937_RS23440	0.34	-1.0
3,915,705	-		DDA3937_RS23440	0.35	+1.2
3,915,889	-				-0.1
3,915,889	-				-2.4
3,916,054	+		DDA3937_RS17180	0.29	-1.7
3,916,054	+		DDA3937_RS17180	0.29	+1.1
3,916,206	+		DDA3937_RS17180	0.50	-3.2
3,916,206	+		DDA3937_RS17180	0.50	+0.5
3,916,207	-		DDA3937_RS17180	0.50	-1.0
3,916,207	-		DDA3937_RS17180	0.50	-0.2
3,916,207	-		DDA3937_RS17180	0.50	-1.2
3,916,230	+		DDA3937_RS17180	0.53	-1.6
3,916,230	+		DDA3937_RS17180	0.53	-1.0
3,916,230	+		DDA3937_RS17180	0.53	-1.7
3,916,230	+		DDA3937_RS17180	0.53	-0.7
3,916,230	+		DDA3937_RS17180	0.53	-1.6
3,916,230	+		DDA3937_RS17180	0.53	+0.5
3,916,231	-		DDA3937_RS17180	0.53	-1.1
3,916,231	-		DDA3937_RS17180	0.53	-1.9
3,916,231	-		DDA3937_RS17180	0.53	+0.1
3,916,231	-		DDA3937_RS17180	0.53	-0.5
3,916,231	-		DDA3937_RS17180	0.53	-2.6
3,916,231	-		DDA3937_RS17180	0.53	-2.6
3,916,231	-		DDA3937_RS17180	0.53	-1.9
3,916,282	+		DDA3937_RS17180	0.60	-0.7
3,916,411	-		DDA3937_RS17180	0.78	-0.5
3,916,517	-				+0.1
3,916,518	+				-0.5
3,916,519	-				-1.2
3,916,571	+				-1.6
3,916,571	+				-1.0
3,916,571	+				-0.5
3,916,572	-				-0.2
3,916,572	-				-0.7
3,916,572	-				-1.2
3,916,592	+				-1.2
3,916,592	+				-1.9
3,916,592	+				-0.5
3,916,593	-				+0.5
3,916,593	-				+0.6
3,916,593	-				-0.8
3,916,593	-				+0.2
3,916,596	+				-0.1
3,916,596	+				-0.6
3,916,596	+				-0.2
3,916,596	+				+0.1
3,916,596	+				-1.3
3,916,596	+				+1.7
3,916,597	-				+0.6
3,916,597	-				-0.5
3,916,597	-				-0.4
3,916,597	-				-0.5
3,916,629	+				+0.3
3,916,629	+				-0.5
3,916,629	+				-0.4
3,916,629	+				+2.3
3,916,630	-				-0.2
3,916,645	+				-2.2
3,916,645	+				+1.4
3,916,645	+				-0.3
3,916,645	+				-0.9
3,916,646	-				-0.0
3,916,646	-				-1.5
3,916,652	-				-1.1
3,916,665	+				+0.6
3,916,665	+				+1.2
3,916,666	-				+0.3
3,916,676	+				-0.9
3,916,705	-				+0.3
3,916,722	-				-0.3
3,916,794	+				+0.3
3,916,795	-				+0.4
3,916,803	+				-3.7
3,916,803	+				-1.2
3,916,803	+				+2.8
3,916,805	+				-0.5
3,916,805	+				+0.5
3,916,805	+				-0.6
3,916,805	+				-0.3
3,916,805	+				+2.5
3,916,805	+				-0.4
3,916,833	-				+0.5
3,916,836	+				-0.7
3,916,836	+				+0.7
3,916,837	-				+1.4
3,916,865	+				-0.3
3,916,865	+				+0.4
3,916,865	+				-0.3
3,916,865	+				-1.1
3,916,865	+				+0.2
3,916,865	+				+0.0
3,916,865	+				+0.1
3,916,866	-				+0.5
3,916,866	-				+0.7
3,916,866	-				+0.7
3,916,866	-				-0.7
3,916,866	-				+0.2
3,916,866	-				+0.8
3,916,928	+				+0.3
3,916,928	+				-0.1
3,916,928	+				+3.5
3,916,949	+				-0.2
3,916,949	+				+0.2
3,916,949	+				+0.2
3,916,950	-				-1.2
3,916,950	-				-0.1
3,916,950	-				-0.7
3,916,950	-				+1.8
3,916,950	-				-1.1
3,916,950	-				-1.4
3,916,950	-				+0.5
3,916,950	-				-0.6
3,916,950	-				+0.3
3,916,951	+				+2.4
3,916,951	+				+0.3
3,916,951	+				+0.4
3,916,951	+				+1.2
3,916,952	-				-0.2
3,916,952	-				+1.6
3,916,952	-				+0.1
3,916,952	-				-0.3
3,916,952	-				-1.2
3,916,952	-				+0.8
3,916,952	-				-1.1
3,916,952	-				-1.7
3,916,952	-				-0.2
3,916,960	+				+0.8
3,916,960	+				-0.5
3,916,960	+				-1.5
3,916,960	+				-0.5
3,916,960	+				+1.4
3,916,960	+				+0.5
3,916,961	-				-1.2
3,916,961	-				+1.3
3,916,961	-				-1.1
3,916,961	-				+0.1
3,916,961	-				-0.7
3,916,961	-				+0.8
3,916,961	-				+3.4
3,917,026	-				+0.2
3,917,026	-				-1.0
3,917,059	+				+0.4
3,917,059	+				-0.5
3,917,059	+				+1.0
3,917,059	+				-1.7
3,917,059	+				+0.5
3,917,060	-				-0.7
3,917,060	-				-0.7
3,917,060	-				+3.0
3,917,060	-				+1.0
3,917,060	-				-0.6
3,917,060	-				-0.3
3,917,069	+				+0.7
3,917,069	+				-0.8
3,917,069	+				-2.6
3,917,069	+				+0.9
3,917,070	-				+2.5
3,917,070	-				-1.4
3,917,070	-				-0.5
3,917,070	-				+0.1
3,917,075	+				-0.9
3,917,075	+				-1.8
3,917,076	-				+2.1
3,917,076	-				-1.7
3,917,078	+				-2.2
3,917,078	+				+2.0
3,917,078	+				-1.0
3,917,078	+				+0.5
3,917,079	-				-1.3
3,917,079	-				+1.1
3,917,079	-				-0.3
3,917,079	-				-0.4
3,917,079	-				-1.2
3,917,079	-				-0.2
3,917,080	+				-0.7
3,917,080	+				-0.7
3,917,080	+				+0.4
3,917,080	+				+0.4
3,917,081	-				+0.9
3,917,081	-				-1.0
3,917,163	+		DDA3937_RS17185	0.11	-1.5
3,917,163	+		DDA3937_RS17185	0.11	-0.1
3,917,185	+		DDA3937_RS17185	0.12	+0.2
3,917,185	+		DDA3937_RS17185	0.12	-0.1
3,917,185	+		DDA3937_RS17185	0.12	-1.1
3,917,186	-		DDA3937_RS17185	0.12	+0.9
3,917,210	+		DDA3937_RS17185	0.13	-1.9
3,917,211	-		DDA3937_RS17185	0.13	-0.0
3,917,211	-		DDA3937_RS17185	0.13	-0.5
3,917,255	+		DDA3937_RS17185	0.16	+0.2
3,917,255	+		DDA3937_RS17185	0.16	+2.9
3,917,315	+				+0.1
3,917,315	+		DDA3937_RS17185	0.19	+0.6
3,917,316	-		DDA3937_RS17185	0.19	-0.0
3,917,316	-		DDA3937_RS17185	0.19	-1.8
3,917,363	+		DDA3937_RS17185	0.21	+0.3
3,917,364	-		DDA3937_RS17185	0.21	+2.0
3,917,364	-		DDA3937_RS17185	0.21	-0.1
3,917,365	+		DDA3937_RS17185	0.21	-0.7
3,917,365	+		DDA3937_RS17185	0.21	+0.3
3,917,365	+		DDA3937_RS17185	0.21	-1.1
3,917,365	+		DDA3937_RS17185	0.21	-0.7
3,917,365	+		DDA3937_RS17185	0.21	+1.5
3,917,365	+		DDA3937_RS17185	0.21	+1.1
3,917,365	+		DDA3937_RS17185	0.21	+1.1
3,917,365	+		DDA3937_RS17185	0.21	-0.8
3,917,365	+		DDA3937_RS17185	0.21	-0.3
3,917,366	-		DDA3937_RS17185	0.21	+0.3
3,917,366	-		DDA3937_RS17185	0.21	-0.2
3,917,366	-		DDA3937_RS17185	0.21	-0.4
3,917,366	-		DDA3937_RS17185	0.21	+0.7
3,917,366	-		DDA3937_RS17185	0.21	-2.1
3,917,480	+		DDA3937_RS17185	0.27	-2.2
3,917,481	-		DDA3937_RS17185	0.27	+0.9
3,917,481	-		DDA3937_RS17185	0.27	+0.1