Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15865

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,627,109	-		DDA3937_RS15860	0.53	-0.9
3,627,109	-		DDA3937_RS15860	0.53	+1.5
3,627,121	+		DDA3937_RS15860	0.54	-1.0
3,627,121	+		DDA3937_RS15860	0.54	-0.8
3,627,122	-		DDA3937_RS15860	0.54	-0.3
3,627,149	-		DDA3937_RS15860	0.55	+0.2
3,627,241	+		DDA3937_RS15860	0.62	-0.5
3,627,241	+		DDA3937_RS15860	0.62	-0.6
3,627,241	+		DDA3937_RS15860	0.62	-1.6
3,627,241	+		DDA3937_RS15860	0.62	-0.2
3,627,241	+				+1.0
3,627,241	+		DDA3937_RS15860	0.62	+0.4
3,627,242	-		DDA3937_RS15860	0.62	+2.0
3,627,328	+		DDA3937_RS15860	0.68	-1.2
3,627,328	+		DDA3937_RS15860	0.68	-2.3
3,627,328	+		DDA3937_RS15860	0.68	-0.3
3,627,328	+		DDA3937_RS15860	0.68	-0.0
3,627,328	+		DDA3937_RS15860	0.68	-1.3
3,627,329	-		DDA3937_RS15860	0.68	-2.8
3,627,329	-		DDA3937_RS15860	0.68	-0.6
3,627,329	-		DDA3937_RS15860	0.68	+0.3
3,627,329	-		DDA3937_RS15860	0.68	-1.0
3,627,374	+		DDA3937_RS15860	0.71	+0.5
3,627,375	-		DDA3937_RS15860	0.71	-0.1
3,627,375	-		DDA3937_RS15860	0.71	-1.8
3,627,375	-		DDA3937_RS15860	0.71	+0.4
3,627,396	+		DDA3937_RS15860	0.72	+0.6
3,627,397	-		DDA3937_RS15860	0.72	+0.4
3,627,397	-		DDA3937_RS15860	0.72	+0.4
3,627,590	+		DDA3937_RS15860	0.86	-1.6
3,627,616	+		DDA3937_RS15860	0.87	-0.6
3,627,634	+		DDA3937_RS15860	0.89	-0.0
3,627,634	+		DDA3937_RS15860	0.89	+0.4
3,627,635	-		DDA3937_RS15860	0.89	-0.3
3,627,635	-				+1.4
3,627,805	+				+0.6
3,627,805	+				-0.6
3,627,806	-				-0.5
3,627,806	-				+0.3
3,627,806	-				+0.3
3,627,806	-				-0.1
3,627,806	-				+0.4
3,627,875	-				-1.1
3,627,875	-				+0.2
3,627,923	-				-0.9
3,627,923	-				-0.1
3,627,945	-				-0.1
3,628,001	+				-0.6
3,628,001	+				-0.2
3,628,001	+				-1.3
3,628,001	+				-3.1
3,628,001	+				-0.5
3,628,001	+				-1.0
3,628,001	+				-1.1
3,628,002	-				-1.3
3,628,002	-				-0.6
3,628,002	-				-1.0
3,628,008	-				-0.3
3,628,008	-				-0.9
3,628,010	-				-0.8
3,628,010	-				-1.6
3,628,010	-				-2.2
3,628,010	-				-0.7
3,628,021	-				-0.4
3,628,021	-				-0.3
3,628,032	-				-0.6
3,628,032	-				-0.9
3,628,058	+				-0.6
3,628,058	+				+0.1
3,628,058	+				-1.6
3,628,058	+				+0.1
3,628,059	-				-1.7
3,628,059	-				-0.8
3,628,059	-				-0.5
3,628,059	-				+1.8
3,628,059	-				-0.1
3,628,059	-				-2.3
3,628,061	+				-1.9
3,628,061	+				-1.3
3,628,061	+				-0.7
3,628,061	+				-0.6
3,628,062	-				-0.7
3,628,154	+		DDA3937_RS15865	0.12	+0.4
3,628,155	-		DDA3937_RS15865	0.12	-2.6
3,628,155	-		DDA3937_RS15865	0.12	-2.7
3,628,155	-		DDA3937_RS15865	0.12	-1.3
3,628,221	-		DDA3937_RS15865	0.17	+0.3
3,628,244	+		DDA3937_RS15865	0.18	-0.8
3,628,244	+		DDA3937_RS15865	0.18	-0.2
3,628,245	-		DDA3937_RS15865	0.18	+1.4
3,628,245	-		DDA3937_RS15865	0.18	-1.3
3,628,245	-		DDA3937_RS15865	0.18	-0.3
3,628,245	-		DDA3937_RS15865	0.18	+1.6
3,628,267	+		DDA3937_RS15865	0.20	-1.0
3,628,312	-		DDA3937_RS15865	0.23	-0.4
3,628,312	-		DDA3937_RS15865	0.23	-0.7
3,628,348	+		DDA3937_RS15865	0.25	+1.5
3,628,348	+		DDA3937_RS15865	0.25	+0.7
3,628,349	-		DDA3937_RS15865	0.25	-0.7
3,628,401	+		DDA3937_RS15865	0.29	-1.3
3,628,402	-		DDA3937_RS15865	0.29	-0.5
3,628,402	-		DDA3937_RS15865	0.29	-2.2
3,628,402	-		DDA3937_RS15865	0.29	-1.1
3,628,410	-		DDA3937_RS15865	0.29	-0.7
3,628,410	-		DDA3937_RS15865	0.29	-1.5
3,628,431	+		DDA3937_RS15865	0.31	-1.2
3,628,449	-		DDA3937_RS15865	0.32	-1.3
3,628,521	+		DDA3937_RS15865	0.36	-3.3
3,628,521	+		DDA3937_RS15865	0.36	-0.6
3,628,521	+		DDA3937_RS15865	0.36	-0.7
3,628,521	+		DDA3937_RS15865	0.36	+0.1
3,628,521	+		DDA3937_RS15865	0.36	+2.5
3,628,521	+		DDA3937_RS15865	0.36	-1.0
3,628,521	+		DDA3937_RS15865	0.36	-2.2
3,628,522	-		DDA3937_RS15865	0.37	-2.2
3,628,522	-		DDA3937_RS15865	0.37	-1.0
3,628,522	-		DDA3937_RS15865	0.37	-0.7
3,628,522	-		DDA3937_RS15865	0.37	-0.2
3,628,522	-				+1.7
3,628,522	-		DDA3937_RS15865	0.37	-2.6
3,628,522	-		DDA3937_RS15865	0.37	-0.8
3,628,538	+		DDA3937_RS15865	0.38	+0.3
3,628,538	+		DDA3937_RS15865	0.38	-1.3
3,628,539	-		DDA3937_RS15865	0.38	-1.0
3,628,539	-		DDA3937_RS15865	0.38	-1.2
3,628,539	-		DDA3937_RS15865	0.38	-0.5
3,628,610	+		DDA3937_RS15865	0.42	+0.2
3,628,610	+		DDA3937_RS15865	0.42	-1.6
3,628,611	-		DDA3937_RS15865	0.42	+0.8
3,628,622	+		DDA3937_RS15865	0.43	-0.4
3,628,622	+		DDA3937_RS15865	0.43	+0.5
3,628,623	-		DDA3937_RS15865	0.43	-0.8
3,628,671	-		DDA3937_RS15865	0.46	+0.8
3,628,671	-		DDA3937_RS15865	0.46	-0.6
3,628,677	+		DDA3937_RS15865	0.47	-1.1
3,628,677	+		DDA3937_RS15865	0.47	-1.4
3,628,677	+		DDA3937_RS15865	0.47	-1.6
3,628,677	+		DDA3937_RS15865	0.47	-0.8
3,628,677	+		DDA3937_RS15865	0.47	-0.9
3,628,677	+		DDA3937_RS15865	0.47	-2.1
3,628,677	+		DDA3937_RS15865	0.47	-1.6
3,628,678	-		DDA3937_RS15865	0.47	+0.4
3,628,678	-		DDA3937_RS15865	0.47	+0.5
3,628,678	-		DDA3937_RS15865	0.47	+0.3
3,628,678	-		DDA3937_RS15865	0.47	-1.0
3,628,700	+		DDA3937_RS15865	0.48	-0.8
3,628,700	+		DDA3937_RS15865	0.48	-0.5
3,628,700	+		DDA3937_RS15865	0.48	-1.8
3,628,700	+		DDA3937_RS15865	0.48	+0.6
3,628,700	+		DDA3937_RS15865	0.48	-1.0
3,628,700	+		DDA3937_RS15865	0.48	-0.4
3,628,700	+		DDA3937_RS15865	0.48	-2.5
3,628,701	-		DDA3937_RS15865	0.48	+0.3
3,628,701	-		DDA3937_RS15865	0.48	-2.3
3,628,701	-		DDA3937_RS15865	0.48	-2.5
3,628,701	-		DDA3937_RS15865	0.48	-1.1
3,628,701	-		DDA3937_RS15865	0.48	-0.2
3,628,701	-		DDA3937_RS15865	0.48	-0.5
3,628,701	-		DDA3937_RS15865	0.48	+2.2
3,628,701	-		DDA3937_RS15865	0.48	-0.4
3,628,701	-		DDA3937_RS15865	0.48	-0.2
3,628,701	-		DDA3937_RS15865	0.48	-1.3
3,628,701	-		DDA3937_RS15865	0.48	-1.9
3,628,778	+		DDA3937_RS15865	0.53	-1.3
3,628,779	-		DDA3937_RS15865	0.53	-0.9
3,628,802	+		DDA3937_RS15865	0.55	-0.2
3,628,802	+		DDA3937_RS15865	0.55	+2.5
3,628,802	+		DDA3937_RS15865	0.55	+0.1
3,628,802	+				+0.3
3,628,803	-		DDA3937_RS15865	0.55	-0.1
3,628,803	-		DDA3937_RS15865	0.55	+1.0
3,628,803	-		DDA3937_RS15865	0.55	+1.0
3,628,803	-		DDA3937_RS15865	0.55	-0.8
3,628,803	-		DDA3937_RS15865	0.55	-1.8
3,628,803	-		DDA3937_RS15865	0.55	+1.4
3,628,803	-		DDA3937_RS15865	0.55	-1.0
3,628,803	-		DDA3937_RS15865	0.55	-1.7
3,628,803	-		DDA3937_RS15865	0.55	-0.6
3,628,808	+		DDA3937_RS15865	0.55	+0.4
3,628,809	-		DDA3937_RS15865	0.55	-0.1
3,628,809	-		DDA3937_RS15865	0.55	+4.9
3,628,836	-		DDA3937_RS15865	0.57	-0.3
3,628,851	-		DDA3937_RS15865	0.58	-1.6
3,628,877	+		DDA3937_RS15865	0.60	-2.6
3,628,877	+		DDA3937_RS15865	0.60	-0.5
3,628,877	+		DDA3937_RS15865	0.60	-0.7
3,628,878	-		DDA3937_RS15865	0.60	-1.7
3,628,878	-				+0.4
3,628,878	-		DDA3937_RS15865	0.60	-0.3
3,628,878	-		DDA3937_RS15865	0.60	-0.8
3,628,929	+		DDA3937_RS15865	0.63	-0.9
3,628,930	-		DDA3937_RS15865	0.63	-1.6
3,629,052	+		DDA3937_RS15865	0.71	+0.1
3,629,086	-		DDA3937_RS15865	0.74	-1.6
3,629,086	-		DDA3937_RS15865	0.74	+0.3
3,629,247	+		DDA3937_RS15865	0.84	-0.3
3,629,248	-		DDA3937_RS15865	0.84	-1.0
3,629,250	-		DDA3937_RS15865	0.85	-0.2
3,629,250	-		DDA3937_RS15865	0.85	+0.7
3,629,250	-				-1.0
3,629,408	+				-2.3
3,629,484	+				-0.0
3,629,484	+				-0.5
3,629,484	+				-0.7
3,629,484	+				-0.2
3,629,484	+				-0.6
3,629,485	-				+0.7
3,629,485	-				-0.8
3,629,498	+				+0.6
3,629,498	+				-0.2
3,629,498	+				-0.4
3,629,498	+				-1.5
3,629,498	+				-0.6
3,629,499	-				+1.1
3,629,499	-				-0.8
3,629,499	-				+0.2
3,629,499	-				-0.3
3,629,499	-				-1.0
3,629,581	+				-0.0
3,629,581	+				+0.4
3,629,582	-				-0.7
3,629,582	-				+1.4
3,629,620	-				+0.9
3,629,630	-				-0.8
3,629,665	+				-0.3
3,629,677	+				-2.0
3,629,799	+				-0.3
3,629,961	+				-0.1
3,629,962	-				+0.2
3,629,962	-				+1.0
3,629,962	-				-0.3
3,629,963	+				-0.1
3,629,963	+				+0.7
3,629,964	-				-0.4
3,629,964	-				+0.2
3,629,967	+				+1.3
3,629,967	+				-1.3
3,629,967	+				-0.9
3,629,967	+				-1.5
3,629,967	+				-0.3
3,629,967	+				-3.5
3,629,967	+				-1.0
3,629,967	+				+1.0
3,629,967	+				-0.2
3,629,968	-				-0.7
3,629,968	-				-1.0
3,629,968	-				-1.8
3,629,968	-				-0.2
3,629,968	-				-0.2
3,629,999	+				+2.0
3,630,008	+				-1.4