Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS11330

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,572,507	+		DDA3937_RS11320	0.84	-1.6
2,572,507	+		DDA3937_RS11320	0.84	-1.8
2,572,587	+				-0.1
2,572,587	+				+1.1
2,572,587	+				-0.1
2,572,588	-				-0.4
2,572,649	+				+0.4
2,572,650	-				-2.4
2,572,650	-				+0.1
2,572,650	-				+0.1
2,572,658	-				-1.0
2,572,674	+				+2.1
2,572,771	-				+0.1
2,572,832	-				-0.6
2,572,834	+				-0.9
2,572,834	+				+1.1
2,572,834	+				-3.0
2,572,834	+				-1.1
2,572,835	-				-1.1
2,572,835	-				+2.1
2,572,835	-				-1.0
2,572,837	+				+0.3
2,572,838	-				-0.4
2,572,838	-				+0.4
2,572,838	-				+0.6
2,572,838	-				-2.0
2,572,910	-		DDA3937_RS11325	0.19	+0.1
2,572,912	+		DDA3937_RS11325	0.20	+0.1
2,572,912	+		DDA3937_RS11325	0.20	-0.3
2,572,912	+		DDA3937_RS11325	0.20	-0.5
2,572,913	-		DDA3937_RS11325	0.20	+0.2
2,572,913	-		DDA3937_RS11325	0.20	+0.0
2,572,941	+		DDA3937_RS11325	0.29	+1.0
2,572,941	+		DDA3937_RS11325	0.29	+0.9
2,572,942	-		DDA3937_RS11325	0.29	-0.2
2,572,942	-		DDA3937_RS11325	0.29	-0.4
2,572,943	+		DDA3937_RS11325	0.29	+1.1
2,572,943	+		DDA3937_RS11325	0.29	-1.2
2,572,943	+		DDA3937_RS11325	0.29	-1.7
2,572,943	+		DDA3937_RS11325	0.29	-1.8
2,572,943	+		DDA3937_RS11325	0.29	-1.4
2,572,943	+				+0.1
2,572,943	+		DDA3937_RS11325	0.29	+0.1
2,572,944	-		DDA3937_RS11325	0.29	+0.8
2,572,944	-		DDA3937_RS11325	0.29	-2.7
2,572,944	-		DDA3937_RS11325	0.29	+0.6
2,572,944	-		DDA3937_RS11325	0.29	+0.1
2,572,944	-		DDA3937_RS11325	0.29	+0.2
2,572,944	-		DDA3937_RS11325	0.29	-2.0
2,572,944	-		DDA3937_RS11325	0.29	-0.8
2,572,944	-		DDA3937_RS11325	0.29	-2.0
2,572,944	-		DDA3937_RS11325	0.29	-1.8
2,572,944	-		DDA3937_RS11325	0.29	-0.6
2,572,944	-		DDA3937_RS11325	0.29	-0.5
2,573,012	+		DDA3937_RS11325	0.50	-1.0
2,573,012	+		DDA3937_RS11325	0.50	+0.6
2,573,012	+		DDA3937_RS11325	0.50	-1.0
2,573,121	+		DDA3937_RS11325	0.83	-1.7
2,573,163	+				-0.2
2,573,164	-				-0.6
2,573,168	+				-0.6
2,573,197	+				-0.6
2,573,197	+				-1.8
2,573,197	+				+1.6
2,573,197	+				-0.9
2,573,197	+				-0.3
2,573,197	+				+0.4
2,573,198	-				+0.1
2,573,198	-				-0.2
2,573,199	+				+0.1
2,573,199	+				+0.1
2,573,200	-				+0.4
2,573,200	-				-1.2
2,573,200	-				+0.6
2,573,200	-				-1.0
2,573,200	-				-1.6
2,573,226	+				+0.9
2,573,226	+				+1.1
2,573,226	+				+1.2
2,573,238	+				+1.0
2,573,238	+				+0.8
2,573,238	+				+0.2
2,573,238	+				-0.4
2,573,242	+				+0.3
2,573,242	+				-1.4
2,573,243	-				-0.7
2,573,243	-				-0.9
2,573,253	+				-1.2
2,573,253	+				+0.2
2,573,253	+				-0.5
2,573,254	-				-0.3
2,573,254	-				-0.1
2,573,254	-				-0.4
2,573,254	-				-1.3
2,573,254	-				+1.8
2,573,254	-				+0.5
2,573,254	-				-1.9
2,573,254	-				-1.0
2,573,254	-				+0.4
2,573,254	-				-0.0
2,573,256	+				-2.0
2,573,256	+				-0.9
2,573,256	+				+0.4
2,573,269	-				+0.4
2,573,280	-				-0.4
2,573,362	-				-0.7
2,573,375	-				-1.3
2,573,375	-				-1.8
2,573,481	-				-2.8
2,573,481	-				-3.2
2,573,526	-				-2.2
2,573,616	+		DDA3937_RS11330	0.14	+0.6
2,573,616	+		DDA3937_RS11330	0.14	-0.8
2,573,616	+		DDA3937_RS11330	0.14	+0.6
2,573,616	+		DDA3937_RS11330	0.14	-1.6
2,573,617	-		DDA3937_RS11330	0.14	-3.3
2,573,617	-		DDA3937_RS11330	0.14	-3.0
2,573,617	-		DDA3937_RS11330	0.14	-1.3
2,573,617	-		DDA3937_RS11330	0.14	-2.6
2,573,617	-		DDA3937_RS11330	0.14	-3.0
2,573,617	-		DDA3937_RS11330	0.14	-1.9
2,573,617	-		DDA3937_RS11330	0.14	-0.6
2,573,764	+		DDA3937_RS11330	0.31	+0.0
2,573,764	+		DDA3937_RS11330	0.31	+0.1
2,573,765	-		DDA3937_RS11330	0.31	-2.9
2,573,774	-		DDA3937_RS11330	0.32	-1.7
2,573,774	-		DDA3937_RS11330	0.32	-1.0
2,573,774	-				-2.4
2,573,812	-		DDA3937_RS11330	0.37	-1.2
2,573,814	+		DDA3937_RS11330	0.37	-1.0
2,573,815	-		DDA3937_RS11330	0.37	-2.2
2,573,815	-		DDA3937_RS11330	0.37	-2.0
2,573,815	-		DDA3937_RS11330	0.37	-1.5
2,573,846	+		DDA3937_RS11330	0.41	+2.6
2,573,854	+		DDA3937_RS11330	0.42	-1.2
2,573,855	-		DDA3937_RS11330	0.42	-1.2
2,573,855	-		DDA3937_RS11330	0.42	-0.7
2,573,880	+		DDA3937_RS11330	0.45	-0.6
2,573,880	+		DDA3937_RS11330	0.45	-0.5
2,573,881	-		DDA3937_RS11330	0.45	-2.6
2,573,881	-		DDA3937_RS11330	0.45	-2.3
2,573,881	-		DDA3937_RS11330	0.45	-1.8
2,573,883	+		DDA3937_RS11330	0.46	-2.1
2,573,884	-		DDA3937_RS11330	0.46	-1.5
2,573,884	-		DDA3937_RS11330	0.46	-1.3
2,573,884	-		DDA3937_RS11330	0.46	-2.9
2,573,885	+		DDA3937_RS11330	0.46	+1.1
2,573,997	+		DDA3937_RS11330	0.59	-1.6
2,573,997	+		DDA3937_RS11330	0.59	-1.2
2,573,997	+		DDA3937_RS11330	0.59	+0.3
2,573,997	+		DDA3937_RS11330	0.59	+0.6
2,573,997	+		DDA3937_RS11330	0.59	+0.1
2,573,997	+		DDA3937_RS11330	0.59	-0.7
2,573,997	+				-1.4
2,573,997	+		DDA3937_RS11330	0.59	-0.2
2,573,997	+		DDA3937_RS11330	0.59	-0.5
2,573,997	+		DDA3937_RS11330	0.59	-1.6
2,573,997	+		DDA3937_RS11330	0.59	-1.0
2,573,997	+		DDA3937_RS11330	0.59	-1.1
2,573,998	-		DDA3937_RS11330	0.59	-2.5
2,573,998	-		DDA3937_RS11330	0.59	-0.4
2,573,998	-		DDA3937_RS11330	0.59	-0.7
2,573,998	-		DDA3937_RS11330	0.59	-2.6
2,573,998	-		DDA3937_RS11330	0.59	-1.3
2,573,998	-		DDA3937_RS11330	0.59	-1.3
2,573,998	-		DDA3937_RS11330	0.59	-1.0
2,573,998	-		DDA3937_RS11330	0.59	-1.3
2,574,000	-		DDA3937_RS11330	0.59	-1.3
2,574,109	-		DDA3937_RS11330	0.73	-1.5
2,574,244	+		DDA3937_RS11330	0.89	-0.4
2,574,244	+		DDA3937_RS11330	0.89	-0.7
2,574,244	+		DDA3937_RS11330	0.89	-0.3
2,574,245	-		DDA3937_RS11330	0.89	-1.8
2,574,258	+				-0.4
2,574,259	-				+0.0
2,574,266	+				+0.9
2,574,266	+				-0.8
2,574,266	+				+0.3
2,574,266	+				-0.0
2,574,267	-				-0.4
2,574,267	-				+1.6
2,574,276	-				-1.4
2,574,331	+				+0.4
2,574,331	+				+0.3
2,574,331	+				-0.6
2,574,331	+				-0.6
2,574,332	-				+0.1
2,574,332	-				-0.5
2,574,332	-				-0.4
2,574,332	-				-0.9
2,574,442	+				-0.1
2,574,443	-				+0.1
2,574,443	-				-1.0
2,574,443	-				-1.0
2,574,443	-				-1.3
2,574,454	-				-3.0
2,574,462	-				-0.8
2,574,474	+				-2.4
2,574,475	-				-1.4
2,574,475	-				-1.8
2,574,520	-				-1.3
2,574,532	-				-2.0
2,574,595	-				-1.2
2,574,595	-				-1.2
2,574,714	+		DDA3937_RS11335	0.25	-2.0
2,574,714	+		DDA3937_RS11335	0.25	-3.5
2,574,715	-		DDA3937_RS11335	0.26	-1.9
2,574,723	+		DDA3937_RS11335	0.27	-0.8
2,574,724	-		DDA3937_RS11335	0.27	-0.4
2,574,942	+		DDA3937_RS11335	0.55	-2.2
2,574,943	-		DDA3937_RS11335	0.56	-1.2
2,574,945	+		DDA3937_RS11335	0.56	-2.0
2,574,946	-		DDA3937_RS11335	0.56	-1.1
2,574,946	-		DDA3937_RS11335	0.56	-1.5
2,574,991	+		DDA3937_RS11335	0.62	-3.7
2,574,992	-		DDA3937_RS11335	0.62	-1.6
2,574,992	-		DDA3937_RS11335	0.62	-1.9
2,575,056	+		DDA3937_RS11335	0.70	+0.6
2,575,056	+		DDA3937_RS11335	0.70	-0.8
2,575,057	-		DDA3937_RS11335	0.70	-1.4
2,575,087	+		DDA3937_RS11335	0.74	-1.9
2,575,087	+		DDA3937_RS11335	0.74	-3.8
2,575,134	+		DDA3937_RS11335	0.81	-2.0
2,575,231	+				-1.8
2,575,232	-				-1.0
2,575,243	+				-1.3
2,575,244	-				-0.4