Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS09775 and DDA3937_RS09780 are separated by 32 nucleotides DDA3937_RS09780 and DDA3937_RS09785 overlap by 1 nucleotides DDA3937_RS09785 and DDA3937_RS09790 are separated by 89 nucleotides
DDA3937_RS09775: DDA3937_RS09775 - [citrate (pro-3S)-lyase] ligase, at 2,207,809 to 2,208,852
_RS09775
DDA3937_RS09780: DDA3937_RS09780 - citrate lyase acyl carrier protein, at 2,208,885 to 2,209,175
_RS09780
DDA3937_RS09785: DDA3937_RS09785 - citrate (pro-3S)-lyase subunit beta, at 2,209,175 to 2,210,065
_RS09785
DDA3937_RS09790: DDA3937_RS09790 - citrate lyase subunit alpha, at 2,210,155 to 2,211,684
_RS09790
Position (kb)
2209
2210
2211 Strain fitness (log2 ratio)
-2
-1
0
1 at 2209.661 kb on + strand, within DDA3937_RS09785 at 2209.661 kb on + strand at 2209.709 kb on + strand, within DDA3937_RS09785 at 2209.709 kb on + strand at 2209.710 kb on - strand, within DDA3937_RS09785 at 2209.710 kb on - strand, within DDA3937_RS09785 at 2209.773 kb on - strand, within DDA3937_RS09785 at 2209.916 kb on + strand, within DDA3937_RS09785
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 2,209,661 + DDA3937_RS09785 0.55 +0.6 2,209,661 + +0.6 2,209,709 + DDA3937_RS09785 0.60 -0.5 2,209,709 + -1.7 2,209,710 - DDA3937_RS09785 0.60 -1.7 2,209,710 - DDA3937_RS09785 0.60 -1.6 2,209,773 - DDA3937_RS09785 0.67 -1.9 2,209,916 + DDA3937_RS09785 0.83 -1.7
Or see this region's nucleotide sequence