Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09785

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS09775 and DDA3937_RS09780 are separated by 32 nucleotidesDDA3937_RS09780 and DDA3937_RS09785 overlap by 1 nucleotidesDDA3937_RS09785 and DDA3937_RS09790 are separated by 89 nucleotides DDA3937_RS09775: DDA3937_RS09775 - [citrate (pro-3S)-lyase] ligase, at 2,207,809 to 2,208,852 _RS09775 DDA3937_RS09780: DDA3937_RS09780 - citrate lyase acyl carrier protein, at 2,208,885 to 2,209,175 _RS09780 DDA3937_RS09785: DDA3937_RS09785 - citrate (pro-3S)-lyase subunit beta, at 2,209,175 to 2,210,065 _RS09785 DDA3937_RS09790: DDA3937_RS09790 - citrate lyase subunit alpha, at 2,210,155 to 2,211,684 _RS09790 Position (kb) 2209 2210 2211Strain fitness (log2 ratio) -2 -1 0 1at 2209.661 kb on + strand, within DDA3937_RS09785at 2209.661 kb on + strandat 2209.709 kb on + strand, within DDA3937_RS09785at 2209.709 kb on + strandat 2209.710 kb on - strand, within DDA3937_RS09785at 2209.710 kb on - strand, within DDA3937_RS09785at 2209.773 kb on - strand, within DDA3937_RS09785at 2209.916 kb on + strand, within DDA3937_RS09785

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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2,209,661 + DDA3937_RS09785 0.55 +0.6
2,209,661 + +0.6
2,209,709 + DDA3937_RS09785 0.60 -0.5
2,209,709 + -1.7
2,209,710 - DDA3937_RS09785 0.60 -1.7
2,209,710 - DDA3937_RS09785 0.60 -1.6
2,209,773 - DDA3937_RS09785 0.67 -1.9
2,209,916 + DDA3937_RS09785 0.83 -1.7

Or see this region's nucleotide sequence