Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09360

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,107,990	+				+2.8
2,108,017	-				+1.5
2,108,017	-				+0.3
2,108,141	-				+0.0
2,108,148	+				-0.3
2,108,148	+				-1.4
2,108,207	+				+1.3
2,108,224	+				-0.8
2,108,224	+				-0.5
2,108,224	+				-2.7
2,108,225	-				+0.5
2,108,225	-				-0.9
2,108,225	-				-0.2
2,108,225	-				+1.4
2,108,225	-				+0.6
2,108,255	+				-0.7
2,108,256	-				-0.1
2,108,274	+				+0.1
2,108,274	+				-2.1
2,108,275	-				+0.6
2,108,301	-				-1.4
2,108,310	-				-0.1
2,108,386	-				+0.3
2,108,495	+				-0.4
2,108,524	-				-0.7
2,108,524	-				+0.3
2,108,524	-				+0.2
2,108,524	-				+0.6
2,108,525	+				+0.2
2,108,525	+				-0.9
2,108,526	-				-1.8
2,108,526	-				+0.6
2,108,526	-				-0.4
2,108,531	+				-0.2
2,108,545	+				+0.3
2,108,546	-				-1.3
2,108,583	+				-0.2
2,108,584	-				-0.2
2,108,584	-				-1.2
2,108,604	-				+0.4
2,108,677	+				+0.7
2,108,799	+				-1.4
2,108,800	-				-0.4
2,108,803	-				+1.2
2,108,828	+				-1.9
2,108,829	-				-1.0
2,108,864	+				+0.5
2,108,864	+				+0.1
2,108,864	+				-2.7
2,108,864	+				-1.0
2,108,864	+				-1.7
2,108,867	+				-2.0
2,108,921	+				-0.2
2,108,930	+				+0.6
2,108,934	+				-0.6
2,108,936	+				+1.9
2,108,937	-				-2.8
2,108,937	-				+0.0
2,108,937	-				+0.1
2,108,983	+				+0.6
2,108,984	-				+0.3
2,108,984	-				+0.6
2,108,984	-				-0.2
2,108,984	-				-0.3
2,109,162	-		DDA3937_RS09360	0.19	-0.2
2,109,312	+		DDA3937_RS09360	0.28	-0.3
2,109,312	+		DDA3937_RS09360	0.28	+1.4
2,109,312	+		DDA3937_RS09360	0.28	-0.8
2,109,312	+		DDA3937_RS09360	0.28	-0.5
2,109,312	+		DDA3937_RS09360	0.28	+0.8
2,109,312	+		DDA3937_RS09360	0.28	-0.8
2,109,312	+		DDA3937_RS09360	0.28	+0.5
2,109,312	+		DDA3937_RS09360	0.28	-0.2
2,109,312	+		DDA3937_RS09360	0.28	-3.3
2,109,312	+		DDA3937_RS09360	0.28	-0.7
2,109,312	+		DDA3937_RS09360	0.28	+0.7
2,109,313	-		DDA3937_RS09360	0.28	-1.8
2,109,313	-		DDA3937_RS09360	0.28	+0.9
2,109,313	-		DDA3937_RS09360	0.28	-2.0
2,109,313	-		DDA3937_RS09360	0.28	+4.2
2,109,313	-		DDA3937_RS09360	0.28	-0.7
2,109,313	-		DDA3937_RS09360	0.28	-0.3
2,109,313	-		DDA3937_RS09360	0.28	+0.2
2,109,313	-		DDA3937_RS09360	0.28	-0.4
2,109,313	-		DDA3937_RS09360	0.28	-1.4
2,109,313	-		DDA3937_RS09360	0.28	+0.5
2,109,313	-		DDA3937_RS09360	0.28	+1.9
2,109,313	-		DDA3937_RS09360	0.28	-0.4
2,109,313	-		DDA3937_RS09360	0.28	+0.2
2,109,313	-		DDA3937_RS09360	0.28	-1.9
2,109,313	-		DDA3937_RS09360	0.28	-0.7
2,109,313	-		DDA3937_RS09360	0.28	-1.0
2,109,313	-				-1.7
2,109,313	-		DDA3937_RS09360	0.28	+0.3
2,109,314	+		DDA3937_RS09360	0.28	-0.5
2,109,314	+		DDA3937_RS09360	0.28	-1.4
2,109,315	-		DDA3937_RS09360	0.28	-0.4
2,109,354	+		DDA3937_RS09360	0.31	+0.5
2,109,354	+		DDA3937_RS09360	0.31	-0.6
2,109,354	+		DDA3937_RS09360	0.31	+0.8
2,109,354	+		DDA3937_RS09360	0.31	-1.5
2,109,355	-		DDA3937_RS09360	0.31	-0.1
2,109,355	-		DDA3937_RS09360	0.31	-2.5
2,109,355	-		DDA3937_RS09360	0.31	-3.3
2,109,355	-		DDA3937_RS09360	0.31	-0.5
2,109,355	-		DDA3937_RS09360	0.31	-0.3
2,109,381	-		DDA3937_RS09360	0.32	-0.3
2,109,604	-		DDA3937_RS09360	0.46	-2.7
2,109,604	-		DDA3937_RS09360	0.46	+0.0
2,109,604	-		DDA3937_RS09360	0.46	-1.5
2,109,604	-		DDA3937_RS09360	0.46	-0.6
2,109,604	-		DDA3937_RS09360	0.46	+2.3
2,109,604	-		DDA3937_RS09360	0.46	-1.1
2,109,640	+		DDA3937_RS09360	0.48	-0.1
2,109,641	-		DDA3937_RS09360	0.48	-1.0
2,109,641	-		DDA3937_RS09360	0.48	+0.5
2,109,641	-		DDA3937_RS09360	0.48	-0.7
2,109,641	-		DDA3937_RS09360	0.48	+0.4
2,109,899	+		DDA3937_RS09360	0.63	+0.0
2,109,899	+		DDA3937_RS09360	0.63	+0.1
2,109,900	-		DDA3937_RS09360	0.63	+1.4
2,109,933	-		DDA3937_RS09360	0.65	+0.6
2,109,933	-		DDA3937_RS09360	0.65	-0.4
2,110,520	+				-0.2
2,110,627	-				+1.0
2,110,663	+				+1.0
2,110,664	-				+0.5
2,110,665	+				-0.7
2,110,665	+				+0.2
2,110,666	-				+1.5
2,110,666	-				-0.2
2,110,666	-				+0.6
2,110,683	+				-0.9
2,110,710	+				-0.3
2,110,711	-				-3.2
2,110,713	-				-0.3
2,110,762	+				-1.1
2,110,762	+				-1.0
2,110,762	+				-1.3
2,110,763	-				+0.2
2,110,787	+				-0.1
2,110,788	-				-0.3
2,110,806	+				-1.0
2,110,806	+				-0.1
2,110,807	-				-0.4
2,110,807	-				-0.4
2,110,807	-				+1.6
2,110,876	-				-0.4
2,110,876	-				+0.2
2,110,894	-				+1.0
2,110,899	+				-1.0
2,110,900	-				+0.1
2,110,901	+				-0.1
2,110,902	-				-2.5
2,110,902	-				-0.8
2,110,916	+				-1.0
2,110,920	+				-0.4
2,111,029	+				+1.2
2,111,029	+				+1.2
2,111,029	+				-0.1
2,111,029	+				-0.2
2,111,029	+				-2.7
2,111,029	+				-1.8
2,111,029	+				+0.6
2,111,030	-				-1.5
2,111,030	-				-1.0
2,111,030	-				-0.9
2,111,030	-				+0.4
2,111,030	-				-0.4
2,111,030	-				-1.4
2,111,030	-				-1.0
2,111,030	-				+0.0
2,111,031	+				-0.0
2,111,031	+				+1.0
2,111,031	+				+0.2
2,111,031	+				-0.5
2,111,031	+				-1.0
2,111,031	+				-1.4
2,111,031	+				+0.3
2,111,031	+				-0.8
2,111,031	+				-2.2
2,111,031	+				-1.3
2,111,032	-				-0.4
2,111,032	-				+2.9
2,111,032	-				-2.0
2,111,032	-				-1.7
2,111,032	-				-0.1
2,111,035	+				+1.0
2,111,036	-				-1.0
2,111,036	-				-0.4
2,111,044	+				-1.1
2,111,059	+		DDA3937_RS09365	0.11	-0.3
2,111,060	-				-1.4
2,111,110	-		DDA3937_RS09365	0.14	+1.6
2,111,153	+		DDA3937_RS09365	0.16	-1.1
2,111,207	+		DDA3937_RS09365	0.20	+0.1
2,111,207	+		DDA3937_RS09365	0.20	+0.0
2,111,208	-		DDA3937_RS09365	0.20	-2.4
2,111,208	-		DDA3937_RS09365	0.20	+0.2
2,111,208	-		DDA3937_RS09365	0.20	-1.8
2,111,229	-		DDA3937_RS09365	0.21	-0.9
2,111,232	+		DDA3937_RS09365	0.21	-0.7
2,111,233	-		DDA3937_RS09365	0.21	-2.8
2,111,233	-		DDA3937_RS09365	0.21	-0.7
2,111,236	-		DDA3937_RS09365	0.21	-1.6
2,111,236	-		DDA3937_RS09365	0.21	+3.0
2,111,241	+				+1.2
2,111,242	-		DDA3937_RS09365	0.22	+0.1
2,111,266	-		DDA3937_RS09365	0.23	-0.4
2,111,280	+		DDA3937_RS09365	0.24	-0.2
2,111,280	+		DDA3937_RS09365	0.24	+0.4
2,111,281	-		DDA3937_RS09365	0.24	-0.7
2,111,284	+		DDA3937_RS09365	0.24	+2.4
2,111,284	+		DDA3937_RS09365	0.24	+0.5
2,111,285	-		DDA3937_RS09365	0.24	+0.9
2,111,304	+		DDA3937_RS09365	0.25	+1.3
2,111,383	+		DDA3937_RS09365	0.30	+0.2
2,111,411	-		DDA3937_RS09365	0.32	+0.4
2,111,412	+		DDA3937_RS09365	0.32	-0.5
2,111,413	-		DDA3937_RS09365	0.32	-0.8
2,111,413	-		DDA3937_RS09365	0.32	+0.3
2,111,433	+		DDA3937_RS09365	0.33	-0.4
2,111,436	+		DDA3937_RS09365	0.33	+0.6
2,111,436	+		DDA3937_RS09365	0.33	+0.8
2,111,437	-		DDA3937_RS09365	0.33	-0.4
2,111,506	+		DDA3937_RS09365	0.37	+0.6
2,111,507	-		DDA3937_RS09365	0.37	-0.9