Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS09060

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,038,598	-		DDA3937_RS09050	0.78	-0.2
2,038,614	+		DDA3937_RS09050	0.79	-0.6
2,038,615	-		DDA3937_RS09050	0.79	+0.2
2,038,759	+		DDA3937_RS09050	0.88	+0.7
2,038,762	+		DDA3937_RS09050	0.88	-2.2
2,038,871	+				-0.6
2,038,872	-				+0.2
2,038,984	-		DDA3937_RS09055	0.20	-0.2
2,039,019	+		DDA3937_RS09055	0.38	+0.3
2,039,020	-		DDA3937_RS09055	0.39	-0.9
2,039,135	+				-0.4
2,039,135	+				-0.9
2,039,135	+				+1.3
2,039,135	+				-0.1
2,039,135	+				-0.1
2,039,135	+				-1.2
2,039,135	+				+0.1
2,039,135	+				-0.0
2,039,135	+				+0.9
2,039,135	+				-2.5
2,039,135	+				-0.1
2,039,135	+				+0.4
2,039,135	+				+0.4
2,039,135	+				-0.0
2,039,135	+				+0.2
2,039,135	+				-0.0
2,039,135	+				-2.3
2,039,135	+				-0.9
2,039,135	+				-0.4
2,039,135	+				+0.1
2,039,135	+				-0.3
2,039,136	-				-0.6
2,039,136	-				-0.7
2,039,136	-				-0.8
2,039,136	-				+0.7
2,039,136	-				+0.7
2,039,136	-				-0.2
2,039,136	-				+0.4
2,039,136	-				+1.0
2,039,136	-				-0.7
2,039,136	-				-0.1
2,039,159	-				-0.5
2,039,161	-				+0.5
2,039,166	-				-3.0
2,039,209	+				-0.2
2,039,284	+				+1.7
2,039,284	+				+0.4
2,039,284	+				+0.0
2,039,285	-				+0.4
2,039,285	-				-0.9
2,039,574	+				-0.2
2,039,574	+				+0.3
2,039,574	+				-1.3
2,039,574	+				-0.0
2,039,574	+				-0.9
2,039,574	+				-2.3
2,039,575	-				-0.1
2,039,575	-				+0.9
2,039,575	-				+0.3
2,039,594	-				+1.8
2,039,632	+				-0.6
2,039,633	-				-0.6
2,039,640	+				+0.7
2,039,641	-				-0.3
2,039,641	-				-0.0
2,039,669	+				-2.1
2,039,669	+				-0.1
2,039,669	+				+0.6
2,039,669	+				+1.3
2,039,670	-				-1.6
2,039,670	-				-2.1
2,039,670	-				-2.8
2,039,670	-				-0.1
2,039,670	-				-0.4
2,039,670	-				-0.0
2,039,670	-				-2.2
2,039,670	-				-0.3
2,039,670	-				-0.9
2,039,670	-				-0.9
2,039,677	+				-0.0
2,039,747	+				+0.4
2,039,791	+				+2.0
2,039,791	+				+0.1
2,039,791	+				-0.4
2,039,791	+				-2.5
2,039,792	-				+0.7
2,039,792	-				-0.5
2,039,792	-				-2.1
2,039,792	-				+2.3
2,039,792	-				-0.4
2,039,792	-				-2.3
2,039,851	-				-1.4
2,039,872	+		DDA3937_RS09060	0.10	-0.6
2,039,998	-		DDA3937_RS09060	0.15	+0.2
2,040,191	+		DDA3937_RS09060	0.22	+0.4
2,040,191	+		DDA3937_RS09060	0.22	+1.0
2,040,414	+		DDA3937_RS09060	0.30	+0.7
2,040,414	+		DDA3937_RS09060	0.30	+1.1
2,040,414	+				+0.1
2,040,415	-		DDA3937_RS09060	0.31	+0.7
2,040,604	-		DDA3937_RS09060	0.38	-0.2
2,040,620	-		DDA3937_RS09060	0.38	-0.4
2,040,620	-		DDA3937_RS09060	0.38	+0.4
2,040,673	+		DDA3937_RS09060	0.40	+0.0
2,040,674	-		DDA3937_RS09060	0.40	-1.1
2,040,758	-		DDA3937_RS09060	0.43	-1.6
2,040,821	-		DDA3937_RS09060	0.46	+0.2
2,040,901	+		DDA3937_RS09060	0.49	+1.5
2,040,901	+		DDA3937_RS09060	0.49	+0.5
2,040,901	+		DDA3937_RS09060	0.49	-0.3
2,040,901	+		DDA3937_RS09060	0.49	-0.8
2,040,901	+		DDA3937_RS09060	0.49	+0.1
2,040,901	+		DDA3937_RS09060	0.49	-0.1
2,040,902	-		DDA3937_RS09060	0.49	-1.3
2,040,902	-		DDA3937_RS09060	0.49	+0.8
2,040,902	-		DDA3937_RS09060	0.49	+1.3
2,040,944	+		DDA3937_RS09060	0.50	+1.2
2,040,944	+		DDA3937_RS09060	0.50	-0.1
2,040,945	-		DDA3937_RS09060	0.50	-1.6
2,041,119	+		DDA3937_RS09060	0.57	+0.1
2,041,121	+		DDA3937_RS09060	0.57	+1.1
2,041,126	+		DDA3937_RS09060	0.57	-1.3
2,041,260	+		DDA3937_RS09060	0.62	+0.2
2,041,261	-		DDA3937_RS09060	0.62	-0.8
2,041,261	-		DDA3937_RS09060	0.62	-0.8
2,041,299	-		DDA3937_RS09060	0.63	-0.1
2,041,517	+		DDA3937_RS09060	0.71	-1.4
2,041,517	+		DDA3937_RS09060	0.71	-0.2
2,041,518	-		DDA3937_RS09060	0.71	+0.3
2,041,518	-		DDA3937_RS09060	0.71	+1.5
2,041,623	+		DDA3937_RS09060	0.75	-0.5
2,041,649	+		DDA3937_RS09060	0.76	+0.1
2,041,690	+		DDA3937_RS09060	0.78	+1.2
2,042,046	-				-0.3
2,042,271	-				+0.3
2,042,429	+		DDA3937_RS09065	0.21	+2.3
2,042,429	+		DDA3937_RS09065	0.21	-0.8
2,042,430	-		DDA3937_RS09065	0.21	-1.3
2,042,468	+		DDA3937_RS09065	0.27	+0.3
2,042,468	+		DDA3937_RS09065	0.27	-0.1
2,042,469	-		DDA3937_RS09065	0.27	-1.0
2,042,546	+		DDA3937_RS09065	0.39	+0.8
2,042,546	+		DDA3937_RS09065	0.39	+0.1
2,042,704	+		DDA3937_RS09065	0.64	-0.4
2,042,704	+		DDA3937_RS09065	0.64	+0.2
2,042,705	-		DDA3937_RS09065	0.64	-1.1
2,042,705	-		DDA3937_RS09065	0.64	-0.3
2,042,705	-		DDA3937_RS09065	0.64	+1.0
2,042,705	-		DDA3937_RS09065	0.64	+0.4
2,042,705	-		DDA3937_RS09065	0.64	+0.5
2,042,762	+		DDA3937_RS09065	0.73	-1.2
2,042,762	+		DDA3937_RS09065	0.73	-0.3
2,042,762	+		DDA3937_RS09065	0.73	+0.8
2,042,762	+		DDA3937_RS09065	0.73	+0.4
2,042,763	-		DDA3937_RS09065	0.74	+3.7
2,042,763	-		DDA3937_RS09065	0.74	-0.2
2,042,796	+		DDA3937_RS09065	0.79	-0.8
2,042,796	+		DDA3937_RS09065	0.79	+1.7
2,042,806	+		DDA3937_RS09065	0.80	-0.1
2,043,058	+		DDA3937_RS09070	0.61	-0.9
2,043,058	+		DDA3937_RS09070	0.61	+2.0
2,043,058	+		DDA3937_RS09070	0.61	-0.5
2,043,058	+		DDA3937_RS09070	0.61	-1.9
2,043,058	+		DDA3937_RS09070	0.61	+0.5
2,043,059	-		DDA3937_RS09070	0.61	-0.3
2,043,059	-		DDA3937_RS09070	0.61	-1.0
2,043,169	-		DDA3937_RS23420	0.19	-0.1
2,043,231	+		DDA3937_RS23420	0.55	+1.5
2,043,231	+		DDA3937_RS23420	0.55	-0.5
2,043,231	+		DDA3937_RS23420	0.55	-0.5
2,043,254	+		DDA3937_RS23420	0.68	-2.3
2,043,255	-		DDA3937_RS23420	0.68	+0.1
2,043,255	-		DDA3937_RS23420	0.68	-0.2