Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS07155

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,609,894	-		DDA3937_RS07150	0.51	+0.6
1,609,901	-		DDA3937_RS07150	0.52	+1.0
1,609,908	+		DDA3937_RS07150	0.53	-1.0
1,609,908	+		DDA3937_RS07150	0.53	-2.1
1,609,908	+		DDA3937_RS07150	0.53	-0.8
1,609,909	-		DDA3937_RS07150	0.53	-0.1
1,609,909	-		DDA3937_RS07150	0.53	-2.2
1,609,909	-		DDA3937_RS07150	0.53	-3.0
1,609,914	+		DDA3937_RS07150	0.53	-0.3
1,609,914	+		DDA3937_RS07150	0.53	+1.4
1,609,915	-		DDA3937_RS07150	0.53	+0.8
1,609,915	-		DDA3937_RS07150	0.53	+0.2
1,609,917	+		DDA3937_RS07150	0.53	-0.5
1,609,917	+				+0.1
1,609,923	-		DDA3937_RS07150	0.54	-1.0
1,609,923	-		DDA3937_RS07150	0.54	-0.1
1,609,945	+		DDA3937_RS07150	0.55	-1.9
1,609,945	+		DDA3937_RS07150	0.55	-0.9
1,609,945	+		DDA3937_RS07150	0.55	-2.2
1,609,946	-		DDA3937_RS07150	0.55	-2.5
1,609,946	-		DDA3937_RS07150	0.55	+0.8
1,609,946	-		DDA3937_RS07150	0.55	-0.4
1,609,946	-		DDA3937_RS07150	0.55	-2.0
1,609,963	+		DDA3937_RS07150	0.57	-0.9
1,609,963	+				+1.2
1,609,963	+		DDA3937_RS07150	0.57	-0.2
1,609,964	-		DDA3937_RS07150	0.57	+0.8
1,609,964	-		DDA3937_RS07150	0.57	-1.2
1,609,997	+		DDA3937_RS07150	0.59	+0.2
1,609,997	+		DDA3937_RS07150	0.59	-0.2
1,610,025	-				+0.5
1,610,034	+		DDA3937_RS07150	0.62	-2.0
1,610,034	+		DDA3937_RS07150	0.62	-2.4
1,610,034	+		DDA3937_RS07150	0.62	-0.8
1,610,035	-		DDA3937_RS07150	0.62	-2.1
1,610,035	-		DDA3937_RS07150	0.62	-0.9
1,610,035	-		DDA3937_RS07150	0.62	-0.1
1,610,035	-		DDA3937_RS07150	0.62	-0.2
1,610,044	+		DDA3937_RS07150	0.63	-0.5
1,610,044	+		DDA3937_RS07150	0.63	-0.1
1,610,045	-		DDA3937_RS07150	0.63	-1.2
1,610,045	-		DDA3937_RS07150	0.63	-0.2
1,610,058	-		DDA3937_RS07150	0.64	-0.3
1,610,059	+		DDA3937_RS07150	0.64	+1.2
1,610,060	-		DDA3937_RS07150	0.64	-0.6
1,610,098	-		DDA3937_RS07150	0.67	-0.0
1,610,107	+		DDA3937_RS07150	0.68	-0.5
1,610,128	+		DDA3937_RS07150	0.69	+0.2
1,610,128	+		DDA3937_RS07150	0.69	-2.2
1,610,129	-		DDA3937_RS07150	0.69	-0.3
1,610,141	+		DDA3937_RS07150	0.70	+1.3
1,610,158	+		DDA3937_RS07150	0.72	-2.2
1,610,159	-		DDA3937_RS07150	0.72	-0.1
1,610,159	-		DDA3937_RS07150	0.72	-1.5
1,610,160	+		DDA3937_RS07150	0.72	-0.8
1,610,160	+		DDA3937_RS07150	0.72	+0.7
1,610,161	-		DDA3937_RS07150	0.72	-0.3
1,610,173	+		DDA3937_RS07150	0.73	-1.3
1,610,174	-		DDA3937_RS07150	0.73	-0.1
1,610,207	+		DDA3937_RS07150	0.75	-0.4
1,610,207	+		DDA3937_RS07150	0.75	-0.3
1,610,208	-		DDA3937_RS07150	0.75	-0.8
1,610,208	-		DDA3937_RS07150	0.75	+0.0
1,610,209	-				-0.2
1,610,210	+		DDA3937_RS07150	0.76	+0.1
1,610,211	-		DDA3937_RS07150	0.76	-2.2
1,610,211	-		DDA3937_RS07150	0.76	-0.1
1,610,211	-		DDA3937_RS07150	0.76	-0.2
1,610,242	-		DDA3937_RS07150	0.78	-1.3
1,610,242	-		DDA3937_RS07150	0.78	+0.6
1,610,242	-		DDA3937_RS07150	0.78	-0.7
1,610,242	-		DDA3937_RS07150	0.78	-0.1
1,610,242	-		DDA3937_RS07150	0.78	-0.0
1,610,243	+		DDA3937_RS07150	0.78	-0.7
1,610,243	+		DDA3937_RS07150	0.78	-0.8
1,610,244	-		DDA3937_RS07150	0.78	-1.0
1,610,244	-		DDA3937_RS07150	0.78	-1.3
1,610,254	+		DDA3937_RS07150	0.79	-1.5
1,610,254	+		DDA3937_RS07150	0.79	-1.0
1,610,255	-		DDA3937_RS07150	0.79	+0.7
1,610,255	-		DDA3937_RS07150	0.79	+1.2
1,610,255	-		DDA3937_RS07150	0.79	-0.2
1,610,255	-		DDA3937_RS07150	0.79	+2.6
1,610,255	-		DDA3937_RS07150	0.79	+0.7
1,610,255	-		DDA3937_RS07150	0.79	+0.8
1,610,255	-		DDA3937_RS07150	0.79	-1.4
1,610,272	+		DDA3937_RS07150	0.80	-0.4
1,610,272	+		DDA3937_RS07150	0.80	-1.7
1,610,273	-		DDA3937_RS07150	0.80	-0.1
1,610,273	-		DDA3937_RS07150	0.80	-1.9
1,610,273	-		DDA3937_RS07150	0.80	+2.3
1,610,273	-		DDA3937_RS07150	0.80	+0.8
1,610,273	-		DDA3937_RS07150	0.80	-3.0
1,610,283	+		DDA3937_RS07150	0.81	+1.8
1,610,283	+		DDA3937_RS07150	0.81	-0.4
1,610,284	-		DDA3937_RS07150	0.81	+0.0
1,610,284	-				-1.0
1,610,284	-		DDA3937_RS07150	0.81	-0.9
1,610,284	-		DDA3937_RS07150	0.81	-1.2
1,610,284	-		DDA3937_RS07150	0.81	-1.0
1,610,321	+		DDA3937_RS07150	0.84	-0.4
1,610,321	+		DDA3937_RS07150	0.84	-0.5
1,610,321	+		DDA3937_RS07150	0.84	-0.8
1,610,322	-		DDA3937_RS07150	0.84	+0.8
1,610,322	-		DDA3937_RS07150	0.84	-0.0
1,610,322	-		DDA3937_RS07150	0.84	-2.2
1,610,326	+		DDA3937_RS07150	0.84	+0.4
1,610,327	-		DDA3937_RS07150	0.85	-1.9
1,610,418	-				-0.1
1,610,420	+				-0.8
1,610,420	+				+0.0
1,610,420	+				+0.7
1,610,420	+				-2.4
1,610,421	-				-2.2
1,610,457	+				-0.7
1,610,457	+				-0.4
1,610,458	-				-0.1
1,610,458	-				-2.4
1,610,458	-				+0.3
1,610,458	-				-2.2
1,610,476	+				-2.8
1,610,476	+				-1.2
1,610,477	-				-0.6
1,610,495	+				-1.2
1,610,496	-				-0.5
1,610,500	+				+2.5
1,610,501	-				+0.0
1,610,501	-				-1.5
1,610,531	+				-1.7
1,610,531	+				-1.0
1,610,532	-				-1.3
1,610,532	-				+0.7
1,610,532	-				+0.4
1,610,533	+				-0.3
1,610,669	+				-2.0
1,610,670	-				-1.2
1,610,690	+				-1.8
1,610,690	+				-0.1
1,610,691	-				+0.8
1,610,694	+				-1.5
1,610,694	+				+1.2
1,610,733	-				+1.0
1,610,733	-				+0.4
1,610,749	+				-0.1
1,610,761	+				-0.4
1,610,761	+				-0.6
1,610,762	-				-0.6
1,610,767	+				-0.3
1,610,767	+				+1.0
1,610,767	+				-0.4
1,610,767	+				-1.9
1,610,767	+				+0.8
1,610,767	+				-0.3
1,610,767	+				-0.6
1,610,768	-				-1.1
1,610,768	-				+0.4
1,610,768	-				+1.2
1,610,768	-				-2.0
1,610,768	-				+1.8
1,610,768	-				-0.7
1,610,779	-				+1.1
1,610,779	-				+0.1
1,610,779	-				-0.2
1,610,810	+				-0.5
1,610,810	+				+0.4
1,610,811	-				-0.4
1,610,811	-				-0.6
1,610,811	-				+0.2
1,610,811	-				-2.2
1,610,880	+				-0.8
1,610,880	+				+1.0
1,610,880	+				-2.9
1,610,880	+				-1.4
1,610,881	-				-0.5
1,610,881	-				-2.0
1,610,944	-				+0.2
1,610,976	+				-0.8
1,610,993	+				-0.1
1,610,993	+				-1.5
1,611,224	+		DDA3937_RS07155	0.11	+0.8
1,611,346	+		DDA3937_RS07155	0.15	-0.1
1,611,376	-		DDA3937_RS07155	0.16	-1.1
1,611,652	+		DDA3937_RS07155	0.25	-0.5
1,611,652	+		DDA3937_RS07155	0.25	-0.7
1,611,652	+		DDA3937_RS07155	0.25	-1.5
1,611,652	+		DDA3937_RS07155	0.25	-0.6
1,611,652	+		DDA3937_RS07155	0.25	-1.7
1,611,653	-		DDA3937_RS07155	0.25	-1.0
1,611,653	-		DDA3937_RS07155	0.25	-0.2
1,611,653	-		DDA3937_RS07155	0.25	-1.3
1,611,653	-		DDA3937_RS07155	0.25	-0.0
1,611,680	+		DDA3937_RS07155	0.26	-0.4
1,611,720	-		DDA3937_RS07155	0.27	-0.0
1,611,748	+		DDA3937_RS07155	0.28	-0.1
1,611,748	+		DDA3937_RS07155	0.28	+0.1
1,611,749	-		DDA3937_RS07155	0.28	+0.1
1,611,944	-		DDA3937_RS07155	0.34	+0.7
1,612,225	+		DDA3937_RS07155	0.43	+0.1
1,612,225	+		DDA3937_RS07155	0.43	-0.4
1,612,226	-		DDA3937_RS07155	0.43	-0.0
1,612,295	-		DDA3937_RS07155	0.46	+0.8
1,612,426	+		DDA3937_RS07155	0.50	+0.4
1,612,427	-		DDA3937_RS07155	0.50	-1.1
1,612,589	+		DDA3937_RS07155	0.55	+0.3
1,612,600	+		DDA3937_RS07155	0.55	-2.4
1,612,600	+		DDA3937_RS07155	0.55	+1.3
1,612,907	+		DDA3937_RS07155	0.65	+2.4
1,612,907	+		DDA3937_RS07155	0.65	+0.0
1,612,908	-		DDA3937_RS07155	0.65	-0.1
1,612,908	-		DDA3937_RS07155	0.65	-0.3
1,612,909	+		DDA3937_RS07155	0.65	-0.7
1,612,909	+		DDA3937_RS07155	0.65	-1.1
1,612,910	-		DDA3937_RS07155	0.65	+1.0
1,612,933	+		DDA3937_RS07155	0.66	-1.8
1,612,933	+		DDA3937_RS07155	0.66	+0.6
1,612,933	+		DDA3937_RS07155	0.66	+0.1
1,612,934	-		DDA3937_RS07155	0.66	-0.2
1,612,934	-		DDA3937_RS07155	0.66	+0.9
1,612,934	-		DDA3937_RS07155	0.66	+1.2
1,612,934	-		DDA3937_RS07155	0.66	-2.4
1,612,981	-		DDA3937_RS07155	0.67	-1.4
1,613,072	+		DDA3937_RS07155	0.70	-0.5
1,613,073	-		DDA3937_RS07155	0.70	-0.4
1,613,250	+		DDA3937_RS07155	0.76	-1.1
1,613,250	+		DDA3937_RS07155	0.76	-0.4
1,613,414	-		DDA3937_RS07155	0.81	-2.4
1,613,530	+		DDA3937_RS07155	0.85	-0.1
1,613,531	-		DDA3937_RS07155	0.85	-0.2
1,613,770	+				+2.6
1,613,984	+				+2.0
1,614,021	+				-2.1
1,614,499	+		DDA3937_RS07160	0.38	-1.2
1,614,500	-		DDA3937_RS07160	0.38	-0.9
1,614,500	-		DDA3937_RS07160	0.38	-0.5
1,614,500	-		DDA3937_RS07160	0.38	-1.0
1,614,546	+		DDA3937_RS07160	0.42	+0.0
1,614,547	-		DDA3937_RS07160	0.42	+0.7
1,614,547	-		DDA3937_RS07160	0.42	-1.7
1,614,547	-		DDA3937_RS07160	0.42	-1.8
1,614,756	+		DDA3937_RS07160	0.58	+0.3
1,614,757	-		DDA3937_RS07160	0.58	-2.8