Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06955

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,556,585	-		DDA3937_RS06950	0.53	-0.5
1,556,585	-		DDA3937_RS06950	0.53	-0.2
1,556,647	+		DDA3937_RS06950	0.56	-1.2
1,556,877	+		DDA3937_RS06950	0.67	-0.6
1,556,878	+		DDA3937_RS06950	0.67	+0.1
1,556,878	+		DDA3937_RS06950	0.67	-0.7
1,556,878	+		DDA3937_RS06950	0.67	+0.2
1,556,878	+		DDA3937_RS06950	0.67	-0.1
1,556,879	-		DDA3937_RS06950	0.68	+0.2
1,556,907	+		DDA3937_RS06950	0.69	-0.5
1,556,907	+		DDA3937_RS06950	0.69	-1.8
1,556,907	+		DDA3937_RS06950	0.69	+0.5
1,556,907	+		DDA3937_RS06950	0.69	-0.0
1,556,908	-		DDA3937_RS06950	0.69	-0.9
1,556,908	-		DDA3937_RS06950	0.69	-1.6
1,556,987	-		DDA3937_RS06950	0.73	-1.6
1,557,102	+		DDA3937_RS06950	0.78	+0.4
1,557,234	+		DDA3937_RS06950	0.85	-1.8
1,557,235	-		DDA3937_RS06950	0.85	+0.1
1,557,235	-		DDA3937_RS06950	0.85	+0.2
1,557,255	+		DDA3937_RS06950	0.86	+1.8
1,557,256	-		DDA3937_RS06950	0.86	+1.6
1,557,322	+		DDA3937_RS06950	0.89	+1.5
1,557,323	-		DDA3937_RS06950	0.89	+1.2
1,557,369	+				+0.5
1,557,639	+				-0.2
1,557,706	-		DDA3937_RS06955	0.11	+0.5
1,557,768	+		DDA3937_RS06955	0.16	-2.8
1,557,841	-		DDA3937_RS06955	0.21	+0.2
1,557,857	-		DDA3937_RS06955	0.22	-0.6
1,557,999	-		DDA3937_RS06955	0.33	-2.7
1,558,001	+		DDA3937_RS06955	0.33	+0.6
1,558,001	+		DDA3937_RS06955	0.33	-1.7
1,558,001	+		DDA3937_RS06955	0.33	+0.6
1,558,002	-		DDA3937_RS06955	0.33	-0.6
1,558,002	-		DDA3937_RS06955	0.33	-2.0
1,558,002	-		DDA3937_RS06955	0.33	-0.6
1,558,008	+		DDA3937_RS06955	0.33	-0.8
1,558,009	-		DDA3937_RS06955	0.33	+0.4
1,558,107	+		DDA3937_RS06955	0.41	-0.6
1,558,107	+		DDA3937_RS06955	0.41	-0.2
1,558,107	+		DDA3937_RS06955	0.41	-0.3
1,558,107	+		DDA3937_RS06955	0.41	-1.3
1,558,108	-		DDA3937_RS06955	0.41	-0.2
1,558,132	+		DDA3937_RS06955	0.42	+0.6
1,558,132	+		DDA3937_RS06955	0.42	-1.0
1,558,133	-		DDA3937_RS06955	0.43	-0.9
1,558,133	-		DDA3937_RS06955	0.43	-0.3
1,558,133	-		DDA3937_RS06955	0.43	+0.2
1,558,133	-		DDA3937_RS06955	0.43	-1.6
1,558,161	+		DDA3937_RS06955	0.45	+0.6
1,558,161	+				+1.4
1,558,161	+		DDA3937_RS06955	0.45	-0.4
1,558,162	-		DDA3937_RS06955	0.45	-1.0
1,558,162	-		DDA3937_RS06955	0.45	+0.5
1,558,162	-		DDA3937_RS06955	0.45	+0.2
1,558,162	-		DDA3937_RS06955	0.45	-0.8
1,558,162	-		DDA3937_RS06955	0.45	-1.0
1,558,162	-		DDA3937_RS06955	0.45	-1.0
1,558,167	-		DDA3937_RS06955	0.45	-2.6
1,558,212	+		DDA3937_RS06955	0.48	-0.5
1,558,213	-		DDA3937_RS06955	0.48	-0.5
1,558,213	-		DDA3937_RS06955	0.48	+0.1
1,558,214	+		DDA3937_RS06955	0.48	-1.2
1,558,214	+		DDA3937_RS06955	0.48	-1.0
1,558,215	-		DDA3937_RS06955	0.49	+0.6
1,558,233	+		DDA3937_RS06955	0.50	+0.6
1,558,239	+		DDA3937_RS06955	0.50	+0.5
1,558,248	+		DDA3937_RS06955	0.51	+0.5
1,558,248	+		DDA3937_RS06955	0.51	+0.2
1,558,280	+		DDA3937_RS06955	0.53	-0.1
1,558,284	+		DDA3937_RS06955	0.54	-0.5
1,558,285	-		DDA3937_RS06955	0.54	-0.2
1,558,285	-		DDA3937_RS06955	0.54	-0.0
1,558,293	+		DDA3937_RS06955	0.54	+1.2
1,558,293	+		DDA3937_RS06955	0.54	-0.2
1,558,293	+		DDA3937_RS06955	0.54	+1.2
1,558,294	-				-0.2
1,558,294	-		DDA3937_RS06955	0.54	+0.2
1,558,294	-		DDA3937_RS06955	0.54	-1.0
1,558,294	-		DDA3937_RS06955	0.54	-0.6
1,558,299	+		DDA3937_RS06955	0.55	+2.8
1,558,321	-				-1.2
1,558,332	+		DDA3937_RS06955	0.57	+10.0
1,558,340	+		DDA3937_RS06955	0.58	+1.2
1,558,340	+		DDA3937_RS06955	0.58	-1.0
1,558,350	+		DDA3937_RS06955	0.58	+0.1
1,558,362	+		DDA3937_RS06955	0.59	+0.3
1,558,382	+		DDA3937_RS06955	0.61	-0.9
1,558,382	+		DDA3937_RS06955	0.61	-0.6
1,558,402	+		DDA3937_RS06955	0.62	-0.4
1,558,403	-		DDA3937_RS06955	0.62	-2.2
1,558,403	-		DDA3937_RS06955	0.62	+0.8
1,558,403	-		DDA3937_RS06955	0.62	-0.8
1,558,403	-		DDA3937_RS06955	0.62	-2.3
1,558,404	+		DDA3937_RS06955	0.62	-1.4
1,558,445	+		DDA3937_RS06955	0.65	-2.0
1,558,445	+		DDA3937_RS06955	0.65	-0.3
1,558,445	+		DDA3937_RS06955	0.65	+0.8
1,558,446	-		DDA3937_RS06955	0.65	+3.4
1,558,461	+		DDA3937_RS06955	0.66	-0.1
1,558,461	+		DDA3937_RS06955	0.66	-3.0
1,558,462	-		DDA3937_RS06955	0.67	+1.0
1,558,462	-		DDA3937_RS06955	0.67	-1.8
1,558,520	+		DDA3937_RS06955	0.71	-2.5
1,558,520	+		DDA3937_RS06955	0.71	-0.5
1,558,528	+		DDA3937_RS06955	0.71	-0.8
1,558,529	-				-1.5
1,558,531	-		DDA3937_RS06955	0.72	-0.5
1,558,531	-		DDA3937_RS06955	0.72	+0.1
1,558,536	+		DDA3937_RS06955	0.72	+0.8
1,558,569	+		DDA3937_RS06955	0.74	-0.3
1,558,608	-		DDA3937_RS06955	0.77	-0.5
1,558,611	+		DDA3937_RS06955	0.77	-1.0
1,558,611	+		DDA3937_RS06955	0.77	+1.2
1,558,625	+		DDA3937_RS06955	0.78	-1.1
1,558,641	+		DDA3937_RS06955	0.80	+0.7
1,558,644	+		DDA3937_RS06955	0.80	-2.0
1,558,644	+		DDA3937_RS06955	0.80	+1.3
1,558,644	+		DDA3937_RS06955	0.80	-1.3
1,558,644	+		DDA3937_RS06955	0.80	-2.2
1,558,644	+		DDA3937_RS06955	0.80	-0.8
1,558,645	-		DDA3937_RS06955	0.80	-0.6
1,558,645	-		DDA3937_RS06955	0.80	+0.2
1,558,645	-		DDA3937_RS06955	0.80	-0.0
1,558,645	-		DDA3937_RS06955	0.80	-0.8
1,558,645	-		DDA3937_RS06955	0.80	+0.2
1,558,657	+		DDA3937_RS06955	0.81	-0.7
1,558,674	-		DDA3937_RS06955	0.82	-0.3
1,558,682	+		DDA3937_RS06955	0.83	+1.4
1,558,682	+		DDA3937_RS06955	0.83	+0.1
1,558,683	-		DDA3937_RS06955	0.83	-0.2
1,558,725	+		DDA3937_RS06955	0.86	+0.4
1,558,726	-		DDA3937_RS06955	0.86	-0.6
1,558,746	+		DDA3937_RS06955	0.87	-1.5
1,558,746	+		DDA3937_RS06955	0.87	-0.2
1,558,749	+		DDA3937_RS06955	0.87	+1.0
1,558,749	+		DDA3937_RS06955	0.87	+0.7
1,558,749	+		DDA3937_RS06955	0.87	+1.8
1,558,750	-		DDA3937_RS06955	0.88	-2.3
1,558,785	-				-0.3
1,558,785	-				-1.9
1,558,802	+				-0.3
1,558,803	-				-0.4
1,558,803	-				-1.4
1,558,806	+				+0.5
1,558,806	+				-1.2
1,558,807	-				-0.0
1,558,807	-				-0.2
1,558,827	-				-0.4
1,558,885	-				+0.4
1,558,908	+				+0.8
1,558,918	+				-0.2
1,558,955	-				-0.6
1,558,970	-				-1.8
1,559,345	+		DDA3937_RS06960	0.54	+0.5
1,559,445	+		DDA3937_RS06960	0.67	-0.5
1,559,445	+		DDA3937_RS06960	0.67	+0.4
1,559,445	+		DDA3937_RS06960	0.67	-0.2
1,559,445	+		DDA3937_RS06960	0.67	-0.5
1,559,467	-		DDA3937_RS06960	0.70	-0.5
1,559,507	+		DDA3937_RS06960	0.75	-1.2
1,559,512	+		DDA3937_RS06960	0.76	-1.3
1,559,512	+		DDA3937_RS06960	0.76	+1.2
1,559,512	+		DDA3937_RS06960	0.76	-0.8
1,559,512	+		DDA3937_RS06960	0.76	-0.8
1,559,512	+		DDA3937_RS06960	0.76	+0.0
1,559,513	-		DDA3937_RS06960	0.76	-1.0
1,559,513	-		DDA3937_RS06960	0.76	-2.6
1,559,513	-		DDA3937_RS06960	0.76	+0.2
1,559,513	-		DDA3937_RS06960	0.76	-0.1
1,559,513	-		DDA3937_RS06960	0.76	+0.7
1,559,514	+		DDA3937_RS06960	0.76	+1.5
1,559,514	+		DDA3937_RS06960	0.76	-0.5
1,559,514	+		DDA3937_RS06960	0.76	+1.5
1,559,514	+		DDA3937_RS06960	0.76	-0.7
1,559,514	+		DDA3937_RS06960	0.76	+0.4
1,559,514	+		DDA3937_RS06960	0.76	-0.5
1,559,515	-		DDA3937_RS06960	0.76	-1.5
1,559,528	+		DDA3937_RS06960	0.78	-0.9
1,559,531	+		DDA3937_RS06960	0.78	-0.5
1,559,531	+		DDA3937_RS06960	0.78	-0.9
1,559,532	-		DDA3937_RS06960	0.78	-0.9
1,559,555	+		DDA3937_RS06960	0.81	+0.2
1,559,556	-		DDA3937_RS06960	0.82	-2.5
1,559,556	-		DDA3937_RS06960	0.82	-0.0
1,559,560	+		DDA3937_RS06960	0.82	-0.8
1,559,560	+		DDA3937_RS06960	0.82	+0.0
1,559,560	+		DDA3937_RS06960	0.82	+1.4
1,559,577	-		DDA3937_RS06960	0.84	-2.2
1,559,577	-		DDA3937_RS06960	0.84	-1.0
1,559,577	-		DDA3937_RS06960	0.84	-1.0
1,559,591	+		DDA3937_RS06960	0.86	-0.2
1,559,591	+		DDA3937_RS06960	0.86	-0.1
1,559,608	+		DDA3937_RS06960	0.88	+0.2
1,559,620	+		DDA3937_RS06960	0.90	+0.3
1,559,621	-		DDA3937_RS06960	0.90	-1.0
1,559,650	+				-1.9
1,559,651	-				-0.4
1,559,681	+				+0.3