Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06615

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,476,257	-		DDA3937_RS06610	0.15	-1.4
1,476,358	+		DDA3937_RS06610	0.24	+0.7
1,476,416	+		DDA3937_RS06610	0.30	-1.3
1,476,481	+		DDA3937_RS06610	0.36	-1.1
1,476,553	+		DDA3937_RS06610	0.43	-2.0
1,476,553	+		DDA3937_RS06610	0.43	-0.3
1,476,553	+		DDA3937_RS06610	0.43	-1.0
1,476,553	+		DDA3937_RS06610	0.43	-1.1
1,476,553	+		DDA3937_RS06610	0.43	-0.6
1,476,554	-		DDA3937_RS06610	0.43	-2.6
1,476,577	+		DDA3937_RS06610	0.45	-1.1
1,476,578	-		DDA3937_RS06610	0.45	-1.9
1,476,578	-		DDA3937_RS06610	0.45	-3.5
1,476,590	-		DDA3937_RS06610	0.46	-1.4
1,476,765	+		DDA3937_RS06610	0.63	-2.1
1,476,766	-		DDA3937_RS06610	0.63	-1.2
1,477,147	+				-1.1
1,477,147	+				-1.2
1,477,148	-				-0.0
1,477,148	-				-1.7
1,477,148	-				-0.6
1,477,159	+				-0.5
1,477,160	-				+1.3
1,477,164	+				-0.4
1,477,164	+				-0.8
1,477,164	+				-1.1
1,477,164	+				-0.0
1,477,164	+				-0.7
1,477,165	-				-1.1
1,477,165	-				-1.3
1,477,352	+		DDA3937_RS06615	0.12	-1.8
1,477,433	-		DDA3937_RS06615	0.20	-3.1
1,477,441	+		DDA3937_RS06615	0.21	-1.4
1,477,441	+		DDA3937_RS06615	0.21	-0.9
1,477,442	-		DDA3937_RS06615	0.21	-2.4
1,477,442	-		DDA3937_RS06615	0.21	-2.1
1,477,448	+		DDA3937_RS06615	0.21	-2.4
1,477,471	-		DDA3937_RS06615	0.24	-5.5
1,477,472	+		DDA3937_RS06615	0.24	-0.1
1,477,472	+		DDA3937_RS06615	0.24	-3.0
1,477,472	+		DDA3937_RS06615	0.24	-0.6
1,477,472	+		DDA3937_RS06615	0.24	+0.0
1,477,472	+		DDA3937_RS06615	0.24	-0.6
1,477,472	+		DDA3937_RS06615	0.24	+0.2
1,477,472	+		DDA3937_RS06615	0.24	-1.9
1,477,472	+		DDA3937_RS06615	0.24	-1.6
1,477,472	+		DDA3937_RS06615	0.24	-0.4
1,477,472	+		DDA3937_RS06615	0.24	+0.1
1,477,472	+		DDA3937_RS06615	0.24	-2.2
1,477,472	+		DDA3937_RS06615	0.24	-0.8
1,477,472	+		DDA3937_RS06615	0.24	-1.0
1,477,472	+		DDA3937_RS06615	0.24	-2.4
1,477,472	+		DDA3937_RS06615	0.24	-1.5
1,477,472	+		DDA3937_RS06615	0.24	-2.1
1,477,473	-		DDA3937_RS06615	0.24	-2.4
1,477,473	-		DDA3937_RS06615	0.24	-4.0
1,477,473	-		DDA3937_RS06615	0.24	-2.9
1,477,473	-		DDA3937_RS06615	0.24	-4.4
1,477,473	-		DDA3937_RS06615	0.24	-4.8
1,477,473	-		DDA3937_RS06615	0.24	-2.4
1,477,473	-		DDA3937_RS06615	0.24	-2.1
1,477,473	-		DDA3937_RS06615	0.24	-4.6
1,477,473	-		DDA3937_RS06615	0.24	-1.9
1,477,473	-		DDA3937_RS06615	0.24	-2.1
1,477,473	-		DDA3937_RS06615	0.24	-1.4
1,477,473	-		DDA3937_RS06615	0.24	-4.0
1,477,473	-		DDA3937_RS06615	0.24	-4.9
1,477,473	-		DDA3937_RS06615	0.24	-3.8
1,477,473	-		DDA3937_RS06615	0.24	-3.4
1,477,473	-		DDA3937_RS06615	0.24	-4.1
1,477,473	-		DDA3937_RS06615	0.24	-2.7
1,477,473	-		DDA3937_RS06615	0.24	-3.8
1,477,473	-		DDA3937_RS06615	0.24	-4.6
1,477,480	+		DDA3937_RS06615	0.24	-3.2
1,477,480	+		DDA3937_RS06615	0.24	-1.7
1,477,481	-		DDA3937_RS06615	0.25	-4.2
1,477,481	-		DDA3937_RS06615	0.25	-4.6
1,477,541	-		DDA3937_RS06615	0.30	-1.7
1,477,541	-		DDA3937_RS06615	0.30	-4.4
1,477,548	+		DDA3937_RS06615	0.31	-0.8
1,477,548	+		DDA3937_RS06615	0.31	-1.9
1,477,548	+		DDA3937_RS06615	0.31	-1.8
1,477,549	-		DDA3937_RS06615	0.31	-6.2
1,477,549	-		DDA3937_RS06615	0.31	-0.7
1,477,550	+		DDA3937_RS06615	0.31	-3.2
1,477,550	+		DDA3937_RS06615	0.31	-1.3
1,477,550	+		DDA3937_RS06615	0.31	-0.8
1,477,550	+		DDA3937_RS06615	0.31	-1.5
1,477,550	+		DDA3937_RS06615	0.31	-0.4
1,477,550	+		DDA3937_RS06615	0.31	-2.7
1,477,550	+		DDA3937_RS06615	0.31	-0.9
1,477,550	+		DDA3937_RS06615	0.31	-2.4
1,477,550	+		DDA3937_RS06615	0.31	+0.2
1,477,550	+		DDA3937_RS06615	0.31	+0.9
1,477,550	+		DDA3937_RS06615	0.31	-1.4
1,477,550	+		DDA3937_RS06615	0.31	-1.0
1,477,550	+		DDA3937_RS06615	0.31	-0.5
1,477,550	+		DDA3937_RS06615	0.31	-1.3
1,477,550	+		DDA3937_RS06615	0.31	-1.4
1,477,550	+		DDA3937_RS06615	0.31	-2.7
1,477,550	+		DDA3937_RS06615	0.31	-1.8
1,477,550	+		DDA3937_RS06615	0.31	+0.7
1,477,551	-		DDA3937_RS06615	0.31	+0.1
1,477,551	-		DDA3937_RS06615	0.31	-3.9
1,477,551	-		DDA3937_RS06615	0.31	-3.1
1,477,551	-		DDA3937_RS06615	0.31	-1.7
1,477,551	-		DDA3937_RS06615	0.31	-3.3
1,477,551	-		DDA3937_RS06615	0.31	-2.6
1,477,551	-		DDA3937_RS06615	0.31	-1.7
1,477,551	-		DDA3937_RS06615	0.31	-3.2
1,477,551	-		DDA3937_RS06615	0.31	-0.1
1,477,551	-		DDA3937_RS06615	0.31	-3.2
1,477,551	-		DDA3937_RS06615	0.31	-3.1
1,477,640	+		DDA3937_RS06615	0.40	-2.1
1,477,640	+		DDA3937_RS06615	0.40	-1.4
1,477,640	+		DDA3937_RS06615	0.40	-0.4
1,477,640	+		DDA3937_RS06615	0.40	-0.6
1,477,640	+		DDA3937_RS06615	0.40	-1.7
1,477,640	+		DDA3937_RS06615	0.40	-1.0
1,477,640	+		DDA3937_RS06615	0.40	-1.6
1,477,641	-		DDA3937_RS06615	0.40	-4.0
1,477,641	-		DDA3937_RS06615	0.40	-2.2
1,477,641	-		DDA3937_RS06615	0.40	-4.6
1,477,641	-		DDA3937_RS06615	0.40	-2.4
1,477,653	+		DDA3937_RS06615	0.41	-0.9
1,477,718	+		DDA3937_RS06615	0.48	-2.4
1,477,780	+		DDA3937_RS06615	0.54	-0.6
1,477,780	+		DDA3937_RS06615	0.54	-1.3
1,477,780	+		DDA3937_RS06615	0.54	-0.2
1,477,780	+		DDA3937_RS06615	0.54	-0.5
1,477,780	+		DDA3937_RS06615	0.54	+0.2
1,477,781	-		DDA3937_RS06615	0.54	-3.5
1,477,781	-		DDA3937_RS06615	0.54	-5.0
1,477,781	-		DDA3937_RS06615	0.54	-4.2
1,477,781	-		DDA3937_RS06615	0.54	-2.7
1,477,865	+		DDA3937_RS06615	0.62	-1.3
1,477,865	+		DDA3937_RS06615	0.62	+0.7
1,477,865	+		DDA3937_RS06615	0.62	-0.9
1,477,866	-		DDA3937_RS06615	0.62	-1.7
1,477,866	-		DDA3937_RS06615	0.62	-1.1
1,477,866	-		DDA3937_RS06615	0.62	-4.3
1,477,866	-		DDA3937_RS06615	0.62	-0.1
1,477,866	-		DDA3937_RS06615	0.62	-1.9
1,477,943	+		DDA3937_RS06615	0.70	+0.4
1,477,943	+		DDA3937_RS06615	0.70	-1.5
1,477,943	+		DDA3937_RS06615	0.70	-0.3
1,477,944	-		DDA3937_RS06615	0.70	-3.7
1,477,944	-		DDA3937_RS06615	0.70	+0.4
1,477,944	-		DDA3937_RS06615	0.70	-0.6
1,477,958	+		DDA3937_RS06615	0.71	-1.3
1,477,959	-		DDA3937_RS06615	0.72	-1.8
1,477,959	-		DDA3937_RS06615	0.72	-5.0
1,477,961	+		DDA3937_RS06615	0.72	-1.4
1,477,961	+		DDA3937_RS06615	0.72	+0.1
1,477,961	+		DDA3937_RS06615	0.72	-1.1
1,477,961	+		DDA3937_RS06615	0.72	-0.5
1,477,962	-		DDA3937_RS06615	0.72	-2.9
1,477,962	-		DDA3937_RS06615	0.72	-1.9
1,477,962	-		DDA3937_RS06615	0.72	-4.4
1,477,962	-		DDA3937_RS06615	0.72	-3.5
1,477,991	-		DDA3937_RS06615	0.75	-1.6
1,477,991	-		DDA3937_RS06615	0.75	-2.4
1,477,991	-		DDA3937_RS06615	0.75	-0.9
1,477,998	+		DDA3937_RS06615	0.75	-1.1
1,478,028	+				-1.1
1,478,029	-		DDA3937_RS06615	0.78	-2.6
1,478,046	+		DDA3937_RS06615	0.80	+1.6
1,478,047	-		DDA3937_RS06615	0.80	-1.7
1,478,047	-		DDA3937_RS06615	0.80	-1.7
1,478,084	+		DDA3937_RS06615	0.84	+0.2
1,478,084	+		DDA3937_RS06615	0.84	-2.3
1,478,085	-				-0.7
1,478,085	-		DDA3937_RS06615	0.84	-0.8
1,478,085	-		DDA3937_RS06615	0.84	-1.4
1,478,194	+				-0.5
1,478,194	+				-0.6
1,478,194	+				-0.7
1,478,194	+				-1.6
1,478,195	-				-1.1
1,478,195	-				+0.2
1,478,195	-				-0.3
1,478,195	-				-1.6
1,478,202	+				-0.0
1,478,319	+				-0.4
1,478,319	+				+0.2
1,478,319	+				-0.9
1,478,320	-				+0.9
1,478,320	-				-0.5
1,478,320	-				-0.3
1,478,320	-				-1.7
1,478,323	+				-1.7
1,478,323	+				-0.8
1,478,329	+				-0.1
1,478,333	+				-0.1
1,478,333	+				-0.3
1,478,341	+				-0.7
1,478,341	+				-1.5
1,478,342	-				+0.3
1,478,342	-				-0.4
1,478,342	-				-0.1
1,478,373	+				-2.1
1,478,373	+				-1.5
1,478,373	+				+2.5
1,478,374	-				-0.2
1,478,386	+				-1.3
1,478,386	+				-3.3
1,478,386	+				-0.5
1,478,386	+				+0.6
1,478,386	+				-0.9
1,478,386	+				+0.2
1,478,386	+				-0.4
1,478,386	+				-0.2
1,478,386	+				-1.0
1,478,386	+				+0.3
1,478,386	+				-1.4
1,478,386	+				-0.7
1,478,386	+				-1.4
1,478,386	+				+0.9
1,478,386	+				+1.8
1,478,386	+				-0.7
1,478,386	+				+0.7
1,478,386	+				-0.3
1,478,386	+				-0.9
1,478,386	+				-0.4
1,478,386	+				+0.3
1,478,386	+				+1.0
1,478,386	+				-1.1
1,478,386	+				+0.1
1,478,386	+				+1.1
1,478,386	+				-0.7
1,478,386	+				-0.9
1,478,386	+				+1.2
1,478,386	+				+0.3
1,478,386	+				-1.2
1,478,386	+				-0.3
1,478,386	+				-0.5
1,478,387	-				+0.7
1,478,387	-				+0.9
1,478,387	-				-1.4
1,478,387	-				-2.3
1,478,387	-				-1.2
1,478,387	-				-0.0
1,478,387	-				-0.9
1,478,387	-				-0.9
1,478,387	-				-0.2
1,478,387	-				-0.8
1,478,387	-				-0.7
1,478,387	-				-0.4
1,478,387	-				+0.3
1,478,389	+				+0.6
1,478,389	+				+0.8
1,478,389	+				+0.0
1,478,389	+				+0.4
1,478,389	+				+0.5
1,478,389	+				+2.4
1,478,389	+				-0.8
1,478,389	+				-1.9
1,478,390	-				-0.6
1,478,390	-				-0.6
1,478,390	-				+0.5
1,478,390	-				-0.7
1,478,411	+				-1.7
1,478,411	+				+1.1
1,478,411	+				-0.4
1,478,412	-				+0.4
1,478,668	+		DDA3937_RS06620	0.12	-0.8
1,478,669	-		DDA3937_RS06620	0.12	+0.3
1,478,698	+		DDA3937_RS06620	0.14	-0.3
1,478,699	-		DDA3937_RS06620	0.14	-1.5
1,478,856	-		DDA3937_RS06620	0.25	-0.5
1,478,856	-		DDA3937_RS06620	0.25	-1.7
1,478,919	-		DDA3937_RS06620	0.29	+0.7
1,479,054	+		DDA3937_RS06620	0.38	+1.5
1,479,155	+		DDA3937_RS06620	0.45	-2.7
1,479,156	-		DDA3937_RS06620	0.45	+0.9