Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06600

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06590 and DDA3937_RS06595 are separated by 73 nucleotidesDDA3937_RS06595 and DDA3937_RS06600 are separated by 115 nucleotidesDDA3937_RS06600 and DDA3937_RS06605 overlap by 11 nucleotides DDA3937_RS06590: DDA3937_RS06590 - copper-binding protein, at 1,472,839 to 1,473,249 _RS06590 DDA3937_RS06595: DDA3937_RS06595 - hypothetical protein, at 1,473,323 to 1,473,766 _RS06595 DDA3937_RS06600: DDA3937_RS06600 - galactose-1-epimerase, at 1,473,882 to 1,474,964 _RS06600 DDA3937_RS06605: DDA3937_RS06605 - galactokinase, at 1,474,954 to 1,476,105 _RS06605 Position (kb) 1473 1474 1475Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1473.056 kb on + strand, within DDA3937_RS06590at 1473.056 kb on + strand, within DDA3937_RS06590at 1473.056 kb on + strand, within DDA3937_RS06590at 1473.056 kb on + strand, within DDA3937_RS06590at 1473.057 kb on - strand, within DDA3937_RS06590at 1473.203 kb on - strand, within DDA3937_RS06590at 1473.252 kb on + strandat 1473.255 kb on + strandat 1473.255 kb on + strandat 1473.255 kb on + strandat 1473.255 kb on + strandat 1473.256 kb on - strandat 1473.256 kb on - strandat 1473.256 kb on - strandat 1473.256 kb on - strandat 1473.263 kb on + strandat 1473.263 kb on + strandat 1473.379 kb on + strand, within DDA3937_RS06595at 1473.379 kb on + strand, within DDA3937_RS06595at 1473.563 kb on - strand, within DDA3937_RS06595at 1473.610 kb on + strand, within DDA3937_RS06595at 1473.610 kb on + strand, within DDA3937_RS06595at 1473.610 kb on + strand, within DDA3937_RS06595at 1473.610 kb on + strand, within DDA3937_RS06595at 1473.611 kb on - strand, within DDA3937_RS06595at 1473.680 kb on + strand, within DDA3937_RS06595at 1473.690 kb on - strand, within DDA3937_RS06595at 1473.718 kb on + strand, within DDA3937_RS06595at 1473.718 kb on + strand, within DDA3937_RS06595at 1473.719 kb on - strand, within DDA3937_RS06595at 1473.719 kb on - strand, within DDA3937_RS06595at 1473.719 kb on - strand, within DDA3937_RS06595at 1473.720 kb on + strand, within DDA3937_RS06595at 1473.721 kb on - strand, within DDA3937_RS06595at 1473.783 kb on + strandat 1473.801 kb on + strandat 1473.802 kb on - strandat 1473.914 kb on + strandat 1473.915 kb on - strandat 1474.045 kb on + strand, within DDA3937_RS06600at 1474.093 kb on + strand, within DDA3937_RS06600at 1474.093 kb on + strand, within DDA3937_RS06600at 1474.093 kb on + strand, within DDA3937_RS06600at 1474.118 kb on + strand, within DDA3937_RS06600at 1474.118 kb on + strand, within DDA3937_RS06600at 1474.118 kb on + strand, within DDA3937_RS06600at 1474.119 kb on - strand, within DDA3937_RS06600at 1474.119 kb on - strand, within DDA3937_RS06600at 1474.119 kb on - strand, within DDA3937_RS06600at 1474.120 kb on + strand, within DDA3937_RS06600at 1474.121 kb on - strand, within DDA3937_RS06600at 1474.121 kb on - strand, within DDA3937_RS06600at 1474.121 kb on - strand, within DDA3937_RS06600at 1474.317 kb on - strand, within DDA3937_RS06600at 1474.317 kb on - strand, within DDA3937_RS06600at 1474.317 kb on - strand, within DDA3937_RS06600at 1474.317 kb on - strand, within DDA3937_RS06600at 1474.328 kb on + strand, within DDA3937_RS06600at 1474.328 kb on + strand, within DDA3937_RS06600at 1474.328 kb on + strand, within DDA3937_RS06600at 1474.329 kb on - strand, within DDA3937_RS06600at 1474.329 kb on - strandat 1474.329 kb on - strand, within DDA3937_RS06600at 1474.329 kb on - strand, within DDA3937_RS06600at 1474.329 kb on - strand, within DDA3937_RS06600at 1474.329 kb on - strand, within DDA3937_RS06600at 1474.329 kb on - strand, within DDA3937_RS06600at 1474.351 kb on + strand, within DDA3937_RS06600at 1474.352 kb on - strand, within DDA3937_RS06600at 1474.352 kb on - strand, within DDA3937_RS06600at 1474.352 kb on - strand, within DDA3937_RS06600at 1474.354 kb on + strand, within DDA3937_RS06600at 1474.355 kb on - strand, within DDA3937_RS06600at 1474.365 kb on + strand, within DDA3937_RS06600at 1474.365 kb on + strand, within DDA3937_RS06600at 1474.366 kb on - strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.417 kb on + strand, within DDA3937_RS06600at 1474.418 kb on - strand, within DDA3937_RS06600at 1474.455 kb on + strand, within DDA3937_RS06600at 1474.455 kb on + strand, within DDA3937_RS06600at 1474.469 kb on - strand, within DDA3937_RS06600at 1474.469 kb on - strandat 1474.469 kb on - strand, within DDA3937_RS06600at 1474.567 kb on + strand, within DDA3937_RS06600at 1474.568 kb on - strand, within DDA3937_RS06600at 1474.744 kb on + strand, within DDA3937_RS06600at 1474.745 kb on - strand, within DDA3937_RS06600at 1474.788 kb on + strand, within DDA3937_RS06600at 1474.789 kb on - strand, within DDA3937_RS06600at 1474.789 kb on - strand, within DDA3937_RS06600at 1474.964 kb on + strandat 1474.994 kb on + strandat 1474.994 kb on + strandat 1474.995 kb on - strandat 1474.995 kb on - strandat 1474.995 kb on - strandat 1474.995 kb on - strandat 1474.995 kb on - strandat 1474.995 kb on - strandat 1475.008 kb on + strandat 1475.089 kb on - strand, within DDA3937_RS06605at 1475.166 kb on + strand, within DDA3937_RS06605at 1475.184 kb on + strand, within DDA3937_RS06605at 1475.438 kb on + strand, within DDA3937_RS06605at 1475.438 kb on + strand, within DDA3937_RS06605at 1475.439 kb on - strand, within DDA3937_RS06605at 1475.439 kb on - strand, within DDA3937_RS06605at 1475.439 kb on - strand, within DDA3937_RS06605at 1475.665 kb on + strand, within DDA3937_RS06605at 1475.673 kb on - strand, within DDA3937_RS06605at 1475.818 kb on + strand, within DDA3937_RS06605at 1475.818 kb on + strand, within DDA3937_RS06605at 1475.818 kb on + strand, within DDA3937_RS06605at 1475.819 kb on - strand, within DDA3937_RS06605at 1475.819 kb on - strand, within DDA3937_RS06605at 1475.822 kb on + strand, within DDA3937_RS06605at 1475.823 kb on - strand, within DDA3937_RS06605at 1475.823 kb on - strand, within DDA3937_RS06605at 1475.823 kb on - strand, within DDA3937_RS06605at 1475.894 kb on + strand, within DDA3937_RS06605at 1475.894 kb on + strand, within DDA3937_RS06605at 1475.895 kb on - strand, within DDA3937_RS06605at 1475.957 kb on + strand, within DDA3937_RS06605at 1475.958 kb on - strand, within DDA3937_RS06605at 1475.958 kb on - strand, within DDA3937_RS06605

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,473,056 + DDA3937_RS06590 0.53 -0.2
1,473,056 + DDA3937_RS06590 0.53 -1.0
1,473,056 + DDA3937_RS06590 0.53 -1.1
1,473,056 + DDA3937_RS06590 0.53 -0.3
1,473,057 - DDA3937_RS06590 0.53 +0.9
1,473,203 - DDA3937_RS06590 0.89 -1.0
1,473,252 + -0.9
1,473,255 + +0.6
1,473,255 + -0.1
1,473,255 + -0.1
1,473,255 + +0.7
1,473,256 - +0.4
1,473,256 - -1.9
1,473,256 - -0.0
1,473,256 - -1.5
1,473,263 + -1.3
1,473,263 + +1.4
1,473,379 + DDA3937_RS06595 0.13 -0.5
1,473,379 + DDA3937_RS06595 0.13 +2.3
1,473,563 - DDA3937_RS06595 0.54 -0.4
1,473,610 + DDA3937_RS06595 0.65 -0.3
1,473,610 + DDA3937_RS06595 0.65 -0.3
1,473,610 + DDA3937_RS06595 0.65 -3.3
1,473,610 + DDA3937_RS06595 0.65 -2.1
1,473,611 - DDA3937_RS06595 0.65 -0.2
1,473,680 + DDA3937_RS06595 0.80 -0.4
1,473,690 - DDA3937_RS06595 0.83 +1.0
1,473,718 + DDA3937_RS06595 0.89 -0.7
1,473,718 + DDA3937_RS06595 0.89 -1.4
1,473,719 - DDA3937_RS06595 0.89 +0.7
1,473,719 - DDA3937_RS06595 0.89 +1.0
1,473,719 - DDA3937_RS06595 0.89 +1.0
1,473,720 + DDA3937_RS06595 0.89 +0.9
1,473,721 - DDA3937_RS06595 0.90 -2.4
1,473,783 + +0.1
1,473,801 + -1.9
1,473,802 - +1.5
1,473,914 + +0.2
1,473,915 - -1.3
1,474,045 + DDA3937_RS06600 0.15 +0.4
1,474,093 + DDA3937_RS06600 0.19 -0.6
1,474,093 + DDA3937_RS06600 0.19 +0.3
1,474,093 + DDA3937_RS06600 0.19 +0.6
1,474,118 + DDA3937_RS06600 0.22 +0.5
1,474,118 + DDA3937_RS06600 0.22 +1.0
1,474,118 + DDA3937_RS06600 0.22 +1.4
1,474,119 - DDA3937_RS06600 0.22 -0.8
1,474,119 - DDA3937_RS06600 0.22 +0.0
1,474,119 - DDA3937_RS06600 0.22 -0.1
1,474,120 + DDA3937_RS06600 0.22 -1.1
1,474,121 - DDA3937_RS06600 0.22 -0.2
1,474,121 - DDA3937_RS06600 0.22 +0.6
1,474,121 - DDA3937_RS06600 0.22 +0.7
1,474,317 - DDA3937_RS06600 0.40 +0.1
1,474,317 - DDA3937_RS06600 0.40 +1.4
1,474,317 - DDA3937_RS06600 0.40 -1.9
1,474,317 - DDA3937_RS06600 0.40 +0.3
1,474,328 + DDA3937_RS06600 0.41 +1.6
1,474,328 + DDA3937_RS06600 0.41 +0.8
1,474,328 + DDA3937_RS06600 0.41 -0.1
1,474,329 - DDA3937_RS06600 0.41 +1.5
1,474,329 - -0.1
1,474,329 - DDA3937_RS06600 0.41 -0.9
1,474,329 - DDA3937_RS06600 0.41 -1.1
1,474,329 - DDA3937_RS06600 0.41 -0.1
1,474,329 - DDA3937_RS06600 0.41 -1.1
1,474,329 - DDA3937_RS06600 0.41 -1.1
1,474,351 + DDA3937_RS06600 0.43 +0.9
1,474,352 - DDA3937_RS06600 0.43 +0.7
1,474,352 - DDA3937_RS06600 0.43 -1.1
1,474,352 - DDA3937_RS06600 0.43 +0.2
1,474,354 + DDA3937_RS06600 0.44 -0.1
1,474,355 - DDA3937_RS06600 0.44 -0.1
1,474,365 + DDA3937_RS06600 0.45 +0.3
1,474,365 + DDA3937_RS06600 0.45 -2.4
1,474,366 - DDA3937_RS06600 0.45 -3.2
1,474,417 + DDA3937_RS06600 0.49 -0.8
1,474,417 + DDA3937_RS06600 0.49 +0.5
1,474,417 + DDA3937_RS06600 0.49 -0.8
1,474,417 + DDA3937_RS06600 0.49 -0.0
1,474,417 + DDA3937_RS06600 0.49 -0.2
1,474,417 + DDA3937_RS06600 0.49 -0.1
1,474,418 - DDA3937_RS06600 0.49 -0.8
1,474,455 + DDA3937_RS06600 0.53 +0.2
1,474,455 + DDA3937_RS06600 0.53 +0.4
1,474,469 - DDA3937_RS06600 0.54 -0.1
1,474,469 - -1.7
1,474,469 - DDA3937_RS06600 0.54 -0.5
1,474,567 + DDA3937_RS06600 0.63 +1.2
1,474,568 - DDA3937_RS06600 0.63 +2.3
1,474,744 + DDA3937_RS06600 0.80 -0.3
1,474,745 - DDA3937_RS06600 0.80 -0.8
1,474,788 + DDA3937_RS06600 0.84 -0.6
1,474,789 - DDA3937_RS06600 0.84 +0.5
1,474,789 - DDA3937_RS06600 0.84 +1.4
1,474,964 + +0.7
1,474,994 + -0.9
1,474,994 + -0.2
1,474,995 - -0.6
1,474,995 - -1.0
1,474,995 - -1.2
1,474,995 - -0.7
1,474,995 - +0.3
1,474,995 - -3.1
1,475,008 + -0.9
1,475,089 - DDA3937_RS06605 0.12 -1.1
1,475,166 + DDA3937_RS06605 0.18 -1.4
1,475,184 + DDA3937_RS06605 0.20 -0.0
1,475,438 + DDA3937_RS06605 0.42 -0.9
1,475,438 + DDA3937_RS06605 0.42 -3.5
1,475,439 - DDA3937_RS06605 0.42 +0.7
1,475,439 - DDA3937_RS06605 0.42 -0.7
1,475,439 - DDA3937_RS06605 0.42 +0.1
1,475,665 + DDA3937_RS06605 0.62 -1.8
1,475,673 - DDA3937_RS06605 0.62 -0.1
1,475,818 + DDA3937_RS06605 0.75 +0.7
1,475,818 + DDA3937_RS06605 0.75 -1.2
1,475,818 + DDA3937_RS06605 0.75 -0.4
1,475,819 - DDA3937_RS06605 0.75 -1.7
1,475,819 - DDA3937_RS06605 0.75 -0.4
1,475,822 + DDA3937_RS06605 0.75 -0.7
1,475,823 - DDA3937_RS06605 0.75 -0.4
1,475,823 - DDA3937_RS06605 0.75 -2.9
1,475,823 - DDA3937_RS06605 0.75 +0.6
1,475,894 + DDA3937_RS06605 0.82 +0.1
1,475,894 + DDA3937_RS06605 0.82 +0.2
1,475,895 - DDA3937_RS06605 0.82 -2.3
1,475,957 + DDA3937_RS06605 0.87 +0.0
1,475,958 - DDA3937_RS06605 0.87 -0.2
1,475,958 - DDA3937_RS06605 0.87 -1.1

Or see this region's nucleotide sequence