Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS06270

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS06255 and DDA3937_RS06260 are separated by 161 nucleotidesDDA3937_RS06260 and DDA3937_RS06265 are separated by 120 nucleotidesDDA3937_RS06265 and DDA3937_RS06270 are separated by 9 nucleotidesDDA3937_RS06270 and DDA3937_RS06275 are separated by 42 nucleotidesDDA3937_RS06275 and DDA3937_RS06280 are separated by 38 nucleotidesDDA3937_RS06280 and DDA3937_RS06285 are separated by 56 nucleotidesDDA3937_RS06285 and DDA3937_RS06290 are separated by 9 nucleotidesDDA3937_RS06290 and DDA3937_RS06295 are separated by 218 nucleotides DDA3937_RS06255: DDA3937_RS06255 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 1,402,071 to 1,403,237 _RS06255 DDA3937_RS06260: DDA3937_RS06260 - multidrug efflux SMR transporter, at 1,403,399 to 1,403,731 _RS06260 DDA3937_RS06265: DDA3937_RS06265 - tRNA-Gln, at 1,403,852 to 1,403,926 _RS06265 DDA3937_RS06270: DDA3937_RS06270 - tRNA-Met, at 1,403,936 to 1,404,012 _RS06270 DDA3937_RS06275: DDA3937_RS06275 - tRNA-Gln, at 1,404,055 to 1,404,129 _RS06275 DDA3937_RS06280: DDA3937_RS06280 - tRNA-Gln, at 1,404,168 to 1,404,242 _RS06280 DDA3937_RS06285: DDA3937_RS06285 - tRNA-Leu, at 1,404,299 to 1,404,383 _RS06285 DDA3937_RS06290: DDA3937_RS06290 - tRNA-Met, at 1,404,393 to 1,404,469 _RS06290 DDA3937_RS06295: DDA3937_RS06295 - asparagine synthase B, at 1,404,688 to 1,406,353 _RS06295 Position (kb) 1403 1404 1405Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1403.236 kb on - strandat 1403.272 kb on + strandat 1403.273 kb on - strandat 1403.273 kb on - strandat 1403.273 kb on - strandat 1403.382 kb on - strandat 1403.408 kb on + strandat 1403.408 kb on + strandat 1403.408 kb on + strandat 1403.408 kb on + strandat 1403.408 kb on + strandat 1403.408 kb on + strandat 1403.408 kb on + strandat 1403.409 kb on - strandat 1403.409 kb on - strandat 1403.409 kb on - strandat 1403.412 kb on + strandat 1403.413 kb on - strandat 1403.413 kb on - strandat 1403.413 kb on - strandat 1403.497 kb on + strand, within DDA3937_RS06260at 1403.497 kb on + strand, within DDA3937_RS06260at 1403.497 kb on + strand, within DDA3937_RS06260at 1403.497 kb on + strand, within DDA3937_RS06260at 1403.498 kb on - strand, within DDA3937_RS06260at 1403.516 kb on + strand, within DDA3937_RS06260at 1403.516 kb on + strand, within DDA3937_RS06260at 1403.516 kb on + strand, within DDA3937_RS06260at 1403.516 kb on + strand, within DDA3937_RS06260at 1403.516 kb on + strand, within DDA3937_RS06260at 1403.516 kb on + strand, within DDA3937_RS06260at 1403.516 kb on + strand, within DDA3937_RS06260at 1403.516 kb on + strand, within DDA3937_RS06260at 1403.516 kb on + strand, within DDA3937_RS06260at 1403.517 kb on - strand, within DDA3937_RS06260at 1403.517 kb on - strand, within DDA3937_RS06260at 1403.517 kb on - strand, within DDA3937_RS06260at 1403.517 kb on - strand, within DDA3937_RS06260at 1403.517 kb on - strand, within DDA3937_RS06260at 1403.517 kb on - strand, within DDA3937_RS06260at 1403.517 kb on - strand, within DDA3937_RS06260at 1403.531 kb on + strand, within DDA3937_RS06260at 1403.532 kb on - strand, within DDA3937_RS06260at 1403.548 kb on + strand, within DDA3937_RS06260at 1403.549 kb on - strand, within DDA3937_RS06260at 1403.576 kb on + strand, within DDA3937_RS06260at 1403.676 kb on + strand, within DDA3937_RS06260at 1403.677 kb on - strand, within DDA3937_RS06260at 1403.677 kb on - strand, within DDA3937_RS06260at 1403.677 kb on - strand, within DDA3937_RS06260at 1403.680 kb on + strand, within DDA3937_RS06260at 1403.680 kb on + strand, within DDA3937_RS06260at 1403.680 kb on + strand, within DDA3937_RS06260at 1403.701 kb on + strandat 1403.729 kb on + strandat 1403.730 kb on - strandat 1403.762 kb on + strandat 1403.762 kb on + strandat 1403.763 kb on - strandat 1403.763 kb on - strandat 1403.770 kb on - strandat 1403.851 kb on - strandat 1403.932 kb on - strandat 1403.932 kb on - strandat 1403.944 kb on - strand, within DDA3937_RS06270at 1403.976 kb on - strand, within DDA3937_RS06270at 1403.976 kb on - strand, within DDA3937_RS06270at 1404.004 kb on + strand, within DDA3937_RS06270at 1404.054 kb on - strandat 1404.562 kb on - strandat 1404.630 kb on + strandat 1404.630 kb on + strandat 1404.631 kb on - strandat 1404.861 kb on - strand, within DDA3937_RS06295at 1404.867 kb on - strand, within DDA3937_RS06295at 1404.867 kb on - strand, within DDA3937_RS06295at 1404.894 kb on - strand, within DDA3937_RS06295at 1404.894 kb on - strand, within DDA3937_RS06295at 1404.964 kb on - strand, within DDA3937_RS06295at 1404.977 kb on + strand, within DDA3937_RS06295at 1404.977 kb on + strand, within DDA3937_RS06295

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,403,236 - +0.1
1,403,272 + -2.9
1,403,273 - -1.0
1,403,273 - -0.0
1,403,273 - -0.4
1,403,382 - -1.7
1,403,408 + -1.0
1,403,408 + +0.7
1,403,408 + +3.6
1,403,408 + -0.3
1,403,408 + +0.2
1,403,408 + +0.3
1,403,408 + +0.6
1,403,409 - -0.8
1,403,409 - -0.6
1,403,409 - -2.4
1,403,412 + +0.4
1,403,413 - -0.9
1,403,413 - -1.3
1,403,413 - -0.5
1,403,497 + DDA3937_RS06260 0.29 +0.0
1,403,497 + DDA3937_RS06260 0.29 +1.4
1,403,497 + DDA3937_RS06260 0.29 -1.0
1,403,497 + DDA3937_RS06260 0.29 -0.2
1,403,498 - DDA3937_RS06260 0.30 +0.4
1,403,516 + DDA3937_RS06260 0.35 +1.0
1,403,516 + DDA3937_RS06260 0.35 +0.1
1,403,516 + DDA3937_RS06260 0.35 -1.7
1,403,516 + DDA3937_RS06260 0.35 -1.9
1,403,516 + DDA3937_RS06260 0.35 -0.8
1,403,516 + DDA3937_RS06260 0.35 +0.8
1,403,516 + DDA3937_RS06260 0.35 -2.1
1,403,516 + DDA3937_RS06260 0.35 -0.1
1,403,516 + DDA3937_RS06260 0.35 -1.9
1,403,517 - DDA3937_RS06260 0.35 -0.0
1,403,517 - DDA3937_RS06260 0.35 +1.1
1,403,517 - DDA3937_RS06260 0.35 +0.4
1,403,517 - DDA3937_RS06260 0.35 -0.8
1,403,517 - DDA3937_RS06260 0.35 -0.5
1,403,517 - DDA3937_RS06260 0.35 -0.2
1,403,517 - DDA3937_RS06260 0.35 -0.8
1,403,531 + DDA3937_RS06260 0.40 -1.7
1,403,532 - DDA3937_RS06260 0.40 +0.3
1,403,548 + DDA3937_RS06260 0.45 +0.0
1,403,549 - DDA3937_RS06260 0.45 -0.9
1,403,576 + DDA3937_RS06260 0.53 +0.7
1,403,676 + DDA3937_RS06260 0.83 -0.5
1,403,677 - DDA3937_RS06260 0.83 +0.0
1,403,677 - DDA3937_RS06260 0.83 +0.5
1,403,677 - DDA3937_RS06260 0.83 -1.9
1,403,680 + DDA3937_RS06260 0.84 -0.7
1,403,680 + DDA3937_RS06260 0.84 +0.0
1,403,680 + DDA3937_RS06260 0.84 -0.4
1,403,701 + +0.4
1,403,729 + +0.4
1,403,730 - -0.7
1,403,762 + -0.0
1,403,762 + +0.4
1,403,763 - -1.4
1,403,763 - -2.2
1,403,770 - -2.9
1,403,851 - +0.2
1,403,932 - +2.1
1,403,932 - +0.1
1,403,944 - DDA3937_RS06270 0.10 -1.7
1,403,976 - DDA3937_RS06270 0.52 -1.4
1,403,976 - DDA3937_RS06270 0.52 -1.0
1,404,004 + DDA3937_RS06270 0.88 -2.3
1,404,054 - -1.4
1,404,562 - -2.1
1,404,630 + -0.9
1,404,630 + -1.4
1,404,631 - -1.7
1,404,861 - DDA3937_RS06295 0.10 -4.2
1,404,867 - DDA3937_RS06295 0.11 -1.7
1,404,867 - DDA3937_RS06295 0.11 -2.9
1,404,894 - DDA3937_RS06295 0.12 -2.1
1,404,894 - DDA3937_RS06295 0.12 -1.1
1,404,964 - DDA3937_RS06295 0.17 -0.7
1,404,977 + DDA3937_RS06295 0.17 -1.7
1,404,977 + DDA3937_RS06295 0.17 -0.4

Or see this region's nucleotide sequence