Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05745

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,283,406	-		DDA3937_RS05740	0.31	-0.5
1,283,468	-		DDA3937_RS05740	0.36	+1.0
1,283,590	+		DDA3937_RS05740	0.47	+0.1
1,283,590	+		DDA3937_RS05740	0.47	-0.1
1,283,590	+		DDA3937_RS05740	0.47	-0.5
1,283,590	+		DDA3937_RS05740	0.47	+0.4
1,283,590	+		DDA3937_RS05740	0.47	+0.8
1,283,591	-		DDA3937_RS05740	0.47	+1.1
1,283,591	-		DDA3937_RS05740	0.47	-0.4
1,283,591	-		DDA3937_RS05740	0.47	+0.4
1,283,591	-		DDA3937_RS05740	0.47	+1.0
1,283,591	-		DDA3937_RS05740	0.47	+0.1
1,283,591	-		DDA3937_RS05740	0.47	-0.2
1,283,591	-		DDA3937_RS05740	0.47	-0.0
1,283,710	+		DDA3937_RS05740	0.57	+0.1
1,283,710	+		DDA3937_RS05740	0.57	+0.7
1,283,711	-		DDA3937_RS05740	0.57	-0.1
1,283,711	-				+0.2
1,283,711	-		DDA3937_RS05740	0.57	-0.1
1,283,711	-		DDA3937_RS05740	0.57	-0.4
1,283,711	-		DDA3937_RS05740	0.57	-0.3
1,283,800	+		DDA3937_RS05740	0.64	-0.3
1,283,800	+		DDA3937_RS05740	0.64	+0.0
1,283,801	-		DDA3937_RS05740	0.64	-0.1
1,283,801	-		DDA3937_RS05740	0.64	-0.2
1,283,818	+		DDA3937_RS05740	0.66	+0.1
1,283,818	+		DDA3937_RS05740	0.66	+0.1
1,283,818	+		DDA3937_RS05740	0.66	+0.5
1,283,818	+		DDA3937_RS05740	0.66	-0.2
1,283,818	+		DDA3937_RS05740	0.66	+0.6
1,283,818	+		DDA3937_RS05740	0.66	+1.0
1,283,818	+		DDA3937_RS05740	0.66	+2.4
1,283,818	+		DDA3937_RS05740	0.66	+1.6
1,283,819	-		DDA3937_RS05740	0.66	-2.0
1,283,842	+		DDA3937_RS05740	0.67	+0.5
1,283,914	+		DDA3937_RS05740	0.73	+1.1
1,283,915	-		DDA3937_RS05740	0.74	+0.0
1,283,915	-		DDA3937_RS05740	0.74	+0.6
1,283,915	-		DDA3937_RS05740	0.74	-0.6
1,283,926	+		DDA3937_RS05740	0.74	+1.6
1,283,926	+		DDA3937_RS05740	0.74	-0.6
1,283,926	+				+1.0
1,283,927	-		DDA3937_RS05740	0.75	+1.1
1,283,927	-		DDA3937_RS05740	0.75	-0.7
1,283,947	+		DDA3937_RS05740	0.76	+1.2
1,283,947	+		DDA3937_RS05740	0.76	-0.6
1,284,003	-		DDA3937_RS05740	0.81	+0.6
1,284,005	+		DDA3937_RS05740	0.81	+1.8
1,284,035	+		DDA3937_RS05740	0.83	+1.9
1,284,093	+		DDA3937_RS05740	0.88	+2.4
1,284,093	+		DDA3937_RS05740	0.88	-0.2
1,284,189	+				+1.0
1,284,197	+				+1.0
1,284,197	+				+0.4
1,284,198	-				+1.7
1,284,213	-				-0.8
1,284,227	+				+0.4
1,284,228	-				+1.1
1,284,233	+				-2.2
1,284,237	+				+0.2
1,284,238	-				+0.3
1,284,238	-				+0.1
1,284,238	-				+0.3
1,284,238	-				+0.3
1,284,249	-				-0.4
1,284,286	-				-1.2
1,284,320	-				-1.0
1,284,320	-				+0.4
1,284,324	+				+1.0
1,284,325	-				-2.0
1,284,328	+				+2.4
1,284,328	+				-0.1
1,284,328	+				-0.6
1,284,328	+				+1.0
1,284,328	+				+1.8
1,284,329	-				-0.5
1,284,329	-				+0.2
1,284,342	+				+2.2
1,284,423	+				+2.9
1,284,516	+		DDA3937_RS05745	0.22	-0.8
1,284,516	+		DDA3937_RS05745	0.22	+0.6
1,284,516	+				-1.0
1,284,517	-		DDA3937_RS05745	0.22	+0.3
1,284,517	-		DDA3937_RS05745	0.22	-1.1
1,284,520	+		DDA3937_RS05745	0.22	-3.0
1,284,537	+		DDA3937_RS05745	0.25	-1.8
1,284,561	-		DDA3937_RS05745	0.28	-1.9
1,284,604	+		DDA3937_RS05745	0.35	-1.0
1,284,605	-		DDA3937_RS05745	0.35	-1.1
1,284,605	-		DDA3937_RS05745	0.35	-1.4
1,284,605	-		DDA3937_RS05745	0.35	+0.7
1,284,658	+		DDA3937_RS05745	0.43	-0.3
1,284,658	+		DDA3937_RS05745	0.43	-2.0
1,284,658	+		DDA3937_RS05745	0.43	-0.4
1,284,658	+				-0.4
1,284,658	+		DDA3937_RS05745	0.43	-0.0
1,284,659	-				-0.6
1,284,659	-		DDA3937_RS05745	0.43	+0.4
1,284,660	+				+1.0
1,284,661	-		DDA3937_RS05745	0.44	-1.0
1,284,662	+		DDA3937_RS05745	0.44	-1.2
1,284,662	+		DDA3937_RS05745	0.44	-1.2
1,284,662	+		DDA3937_RS05745	0.44	-1.7
1,284,662	+		DDA3937_RS05745	0.44	-0.6
1,284,663	-		DDA3937_RS05745	0.44	-1.0
1,284,713	+		DDA3937_RS05745	0.52	-2.2
1,284,713	+		DDA3937_RS05745	0.52	+1.0
1,284,714	-		DDA3937_RS05745	0.52	-0.6
1,284,714	-		DDA3937_RS05745	0.52	-0.7
1,284,720	+		DDA3937_RS05745	0.53	+1.5
1,284,743	+		DDA3937_RS05745	0.56	-0.8
1,284,743	+		DDA3937_RS05745	0.56	-0.5
1,284,743	+		DDA3937_RS05745	0.56	-2.0
1,284,744	-		DDA3937_RS05745	0.57	-0.6
1,284,775	+		DDA3937_RS05745	0.61	-1.0
1,284,787	+		DDA3937_RS05745	0.63	+0.2
1,284,787	+		DDA3937_RS05745	0.63	-0.6
1,284,787	+		DDA3937_RS05745	0.63	+0.1
1,284,787	+		DDA3937_RS05745	0.63	-0.6
1,284,788	-				-1.4
1,284,788	-		DDA3937_RS05745	0.63	+1.6
1,284,788	-		DDA3937_RS05745	0.63	-0.3
1,284,792	+		DDA3937_RS05745	0.64	-1.8
1,284,792	+		DDA3937_RS05745	0.64	-2.0
1,284,819	+		DDA3937_RS05745	0.68	-1.0
1,284,849	+		DDA3937_RS05745	0.73	-1.2
1,284,849	+		DDA3937_RS05745	0.73	-0.4
1,284,850	-		DDA3937_RS05745	0.73	-0.4
1,284,883	+		DDA3937_RS05745	0.78	+0.5
1,284,883	+		DDA3937_RS05745	0.78	+0.5
1,284,883	+		DDA3937_RS05745	0.78	-1.9
1,284,884	-		DDA3937_RS05745	0.78	-0.3
1,284,884	-				+1.0
1,284,884	-		DDA3937_RS05745	0.78	-1.0
1,284,884	-		DDA3937_RS05745	0.78	-1.2
1,284,975	+				-0.6
1,284,975	+				-0.6
1,284,976	-				-0.4
1,284,976	-				+0.7
1,284,976	-				-0.1
1,284,976	-				+0.8
1,284,984	+				+0.5
1,285,011	+				+1.0
1,285,012	-				+0.1
1,285,027	+				-0.3
1,285,027	+				+0.4
1,285,028	-				-0.0
1,285,028	-				-1.3
1,285,028	-				+0.5
1,285,028	-				+0.2
1,285,033	+				-0.3
1,285,033	+				-0.6
1,285,033	+				+0.4
1,285,033	+				+3.3
1,285,034	-				-0.6
1,285,034	-				+0.4
1,285,034	-				-3.0
1,285,034	-				-0.4
1,285,037	+				-0.6
1,285,037	+				+0.3
1,285,037	+				+1.6
1,285,037	+				+1.1
1,285,038	-				-1.8
1,285,049	+				-1.1
1,285,049	+				+0.6
1,285,049	+				+0.1
1,285,050	-				-0.1
1,285,050	-				+0.5
1,285,050	-				-0.3
1,285,050	-				-1.6
1,285,050	-				-0.6
1,285,050	-				-1.0
1,285,050	-				-0.2
1,285,050	-				-0.0
1,285,050	-				-1.8
1,285,073	+				+1.1
1,285,073	+				+0.8
1,285,074	-				-2.9
1,285,074	-				+0.8
1,285,074	-				-2.3
1,285,167	-				+0.1
1,285,183	+				-1.2
1,285,184	-				-0.2
1,285,193	+				-1.4
1,285,193	+				-0.1
1,285,193	+				-1.1
1,285,194	-				-1.8
1,285,194	-				-0.5
1,285,194	-				-0.1
1,285,375	+				-2.4
1,285,585	+		DDA3937_RS05750	0.14	-0.4
1,285,586	-		DDA3937_RS05750	0.14	-2.0
1,285,586	-		DDA3937_RS05750	0.14	+1.6
1,285,586	-		DDA3937_RS05750	0.14	+0.1
1,285,586	-		DDA3937_RS05750	0.14	-1.6
1,285,589	+				+1.0
1,285,589	+		DDA3937_RS05750	0.14	+0.2
1,285,589	+		DDA3937_RS05750	0.14	+0.2
1,285,589	+		DDA3937_RS05750	0.14	-0.0
1,285,590	-		DDA3937_RS05750	0.14	-0.8
1,285,590	-		DDA3937_RS05750	0.14	-1.0
1,285,590	-		DDA3937_RS05750	0.14	-2.4
1,285,590	-		DDA3937_RS05750	0.14	-0.0
1,285,590	-		DDA3937_RS05750	0.14	+0.9
1,285,590	-		DDA3937_RS05750	0.14	-0.3
1,285,595	-		DDA3937_RS05750	0.14	-2.1
1,285,595	-		DDA3937_RS05750	0.14	+4.8
1,285,644	+		DDA3937_RS05750	0.16	+0.1
1,285,645	-		DDA3937_RS05750	0.16	-0.8
1,285,645	-				+1.6
1,285,646	+		DDA3937_RS05750	0.16	-0.3
1,285,646	+		DDA3937_RS05750	0.16	-0.4
1,285,646	+		DDA3937_RS05750	0.16	-0.0
1,285,647	-		DDA3937_RS05750	0.16	+1.4
1,285,647	-		DDA3937_RS05750	0.16	-0.1
1,285,674	+		DDA3937_RS05750	0.17	-1.6
1,285,674	+		DDA3937_RS05750	0.17	+1.0
1,285,674	+		DDA3937_RS05750	0.17	-2.0
1,285,674	+		DDA3937_RS05750	0.17	-1.0
1,285,674	+		DDA3937_RS05750	0.17	-1.9
1,285,675	-		DDA3937_RS05750	0.17	-0.3
1,285,675	-		DDA3937_RS05750	0.17	+0.2
1,285,675	-		DDA3937_RS05750	0.17	-1.4
1,285,675	-		DDA3937_RS05750	0.17	-2.4
1,285,887	+		DDA3937_RS05750	0.23	-1.4
1,285,888	-				-0.0
1,285,888	-		DDA3937_RS05750	0.23	-0.1
1,285,888	-		DDA3937_RS05750	0.23	-0.3
1,285,921	-		DDA3937_RS05750	0.24	+1.2
1,285,921	-		DDA3937_RS05750	0.24	-0.5
1,285,969	+		DDA3937_RS05750	0.25	+0.1
1,285,970	-		DDA3937_RS05750	0.25	-1.5
1,285,970	-		DDA3937_RS05750	0.25	-0.4
1,285,989	+		DDA3937_RS05750	0.26	-0.6
1,285,990	-		DDA3937_RS05750	0.26	-0.0