Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS05160

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS05155 and DDA3937_RS05160 are separated by 140 nucleotidesDDA3937_RS05160 and DDA3937_RS05165 are separated by 3 nucleotides DDA3937_RS05155: DDA3937_RS05155 - outer membrane protein assembly factor BamA, at 1,149,933 to 1,152,350 _RS05155 DDA3937_RS05160: DDA3937_RS05160 - molecular chaperone Skp, at 1,152,491 to 1,152,988 _RS05160 DDA3937_RS05165: DDA3937_RS05165 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,152,992 to 1,154,014 _RS05165 Position (kb) 1152 1153Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1152.388 kb on + strandat 1152.388 kb on + strandat 1152.416 kb on + strandat 1152.416 kb on + strandat 1152.416 kb on + strandat 1152.416 kb on + strandat 1152.418 kb on + strandat 1152.418 kb on + strandat 1152.418 kb on + strandat 1152.418 kb on + strandat 1152.468 kb on + strandat 1152.472 kb on + strandat 1152.472 kb on + strandat 1152.472 kb on + strandat 1152.506 kb on + strandat 1152.625 kb on + strand, within DDA3937_RS05160at 1152.724 kb on + strand, within DDA3937_RS05160at 1152.902 kb on + strand, within DDA3937_RS05160at 1152.935 kb on + strand, within DDA3937_RS05160

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,152,388 + +0.8
1,152,388 + +0.2
1,152,416 + +0.2
1,152,416 + -2.8
1,152,416 + -0.2
1,152,416 + +0.4
1,152,418 + +0.0
1,152,418 + +0.0
1,152,418 + +1.9
1,152,418 + +0.1
1,152,468 + -0.7
1,152,472 + -1.0
1,152,472 + -2.0
1,152,472 + -0.0
1,152,506 + -1.0
1,152,625 + DDA3937_RS05160 0.27 -0.7
1,152,724 + DDA3937_RS05160 0.47 -0.4
1,152,902 + DDA3937_RS05160 0.83 -2.6
1,152,935 + DDA3937_RS05160 0.89 -1.9

Or see this region's nucleotide sequence