Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS04105 and DDA3937_RS04110 are separated by 110 nucleotides DDA3937_RS04110 and DDA3937_RS04115 are separated by 840 nucleotides
DDA3937_RS04105: DDA3937_RS04105 - type VI secretion system tip protein VgrG, at 912,129 to 913,982
_RS04105
DDA3937_RS04110: DDA3937_RS04110 - Hcp family type VI secretion system effector, at 914,093 to 914,611
_RS04110
DDA3937_RS04115: DDA3937_RS04115 - site-specific integrase, at 915,452 to 916,543
_RS04115
Position (kb) 914
915 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 913.166 kb on + strand, within DDA3937_RS04105 at 913.222 kb on + strand, within DDA3937_RS04105 at 913.222 kb on + strand, within DDA3937_RS04105 at 913.223 kb on - strand, within DDA3937_RS04105 at 913.223 kb on - strand, within DDA3937_RS04105 at 913.223 kb on - strand, within DDA3937_RS04105 at 913.276 kb on + strand, within DDA3937_RS04105 at 913.297 kb on + strand, within DDA3937_RS04105 at 913.297 kb on + strand, within DDA3937_RS04105 at 913.298 kb on - strand, within DDA3937_RS04105 at 913.357 kb on + strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.358 kb on - strand, within DDA3937_RS04105 at 913.478 kb on - strand, within DDA3937_RS04105 at 913.996 kb on + strand at 914.170 kb on - strand, within DDA3937_RS04110 at 914.595 kb on + strand at 914.595 kb on + strand at 914.611 kb on + strand at 914.611 kb on + strand at 914.639 kb on - strand at 914.726 kb on + strand at 914.796 kb on + strand at 914.864 kb on + strand at 914.864 kb on + strand at 914.864 kb on + strand at 914.867 kb on + strand at 914.868 kb on - strand at 915.033 kb on - strand at 915.068 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.102 kb on + strand at 915.103 kb on - strand at 915.103 kb on - strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.141 kb on + strand at 915.142 kb on - strand at 915.142 kb on - strand at 915.142 kb on - strand at 915.146 kb on - strand at 915.151 kb on + strand at 915.152 kb on - strand at 915.154 kb on + strand at 915.155 kb on - strand at 915.179 kb on - strand at 915.191 kb on + strand at 915.192 kb on - strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.266 kb on + strand at 915.267 kb on - strand at 915.267 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.281 kb on - strand at 915.283 kb on - strand at 915.321 kb on + strand at 915.321 kb on + strand at 915.399 kb on + strand at 915.553 kb on + strand at 915.594 kb on + strand, within DDA3937_RS04115 at 915.594 kb on + strand, within DDA3937_RS04115 at 915.594 kb on + strand, within DDA3937_RS04115 at 915.595 kb on - strand, within DDA3937_RS04115 at 915.595 kb on - strand, within DDA3937_RS04115
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 913,166 + DDA3937_RS04105 0.56 +0.3 913,222 + DDA3937_RS04105 0.59 -1.7 913,222 + DDA3937_RS04105 0.59 -2.1 913,223 - DDA3937_RS04105 0.59 -1.5 913,223 - DDA3937_RS04105 0.59 -0.3 913,223 - DDA3937_RS04105 0.59 +0.8 913,276 + DDA3937_RS04105 0.62 +0.9 913,297 + DDA3937_RS04105 0.63 +0.2 913,297 + DDA3937_RS04105 0.63 +0.2 913,298 - DDA3937_RS04105 0.63 -0.3 913,357 + DDA3937_RS04105 0.66 -0.1 913,358 - DDA3937_RS04105 0.66 +0.8 913,358 - DDA3937_RS04105 0.66 +0.1 913,358 - DDA3937_RS04105 0.66 -0.1 913,358 - DDA3937_RS04105 0.66 +0.2 913,358 - DDA3937_RS04105 0.66 +1.9 913,358 - DDA3937_RS04105 0.66 -1.1 913,478 - DDA3937_RS04105 0.73 -0.3 913,996 + -2.1 914,170 - DDA3937_RS04110 0.15 -1.0 914,595 + +1.1 914,595 + -0.0 914,611 + -1.6 914,611 + -2.7 914,639 - -2.5 914,726 + +0.7 914,796 + +0.4 914,864 + -0.7 914,864 + +1.0 914,864 + -0.6 914,867 + -1.0 914,868 - -0.3 915,033 - -2.1 915,068 + -2.9 915,102 + +1.6 915,102 + +0.9 915,102 + +0.9 915,102 + +0.1 915,103 - +0.2 915,103 - -0.8 915,141 + +0.1 915,141 + -0.5 915,141 + +0.2 915,141 + +0.5 915,141 + +0.2 915,141 + -0.2 915,141 + -2.1 915,142 - +0.4 915,142 - -0.9 915,142 - -0.6 915,146 - -0.4 915,151 + +0.9 915,152 - +0.4 915,154 + +0.2 915,155 - +0.5 915,179 - +0.4 915,191 + +0.3 915,192 - -1.3 915,266 + +0.2 915,266 + +0.5 915,266 + -0.6 915,266 + +0.1 915,266 + +0.5 915,267 - -0.7 915,267 - -2.5 915,281 - +1.8 915,281 - -1.4 915,281 - -0.8 915,281 - +0.2 915,283 - +0.6 915,321 + -0.1 915,321 + -2.5 915,399 + -0.2 915,553 + -1.5 915,594 + DDA3937_RS04115 0.13 -0.2 915,594 + DDA3937_RS04115 0.13 +0.1 915,594 + DDA3937_RS04115 0.13 -0.8 915,595 - DDA3937_RS04115 0.13 -1.3 915,595 - DDA3937_RS04115 0.13 +0.7
Or see this region's nucleotide sequence