Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03440

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS03430 and DDA3937_RS03435 are separated by 5 nucleotidesDDA3937_RS03435 and DDA3937_RS03440 are separated by 10 nucleotidesDDA3937_RS03440 and DDA3937_RS03445 overlap by 11 nucleotides DDA3937_RS03430: DDA3937_RS03430 - ABC transporter ATP-binding protein, at 749,965 to 751,044 _RS03430 DDA3937_RS03435: DDA3937_RS03435 - phosphodiesterase, at 751,050 to 751,871 _RS03435 DDA3937_RS03440: DDA3937_RS03440 - carbohydrate ABC transporter permease, at 751,882 to 752,769 _RS03440 DDA3937_RS03445: DDA3937_RS03445 - sugar ABC transporter permease, at 752,759 to 753,631 _RS03445 Position (kb) 751 752 753Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 751.039 kb on + strandat 751.040 kb on - strandat 751.040 kb on - strandat 751.040 kb on - strandat 751.045 kb on - strandat 751.045 kb on - strandat 751.045 kb on - strandat 751.045 kb on - strandat 751.052 kb on - strandat 751.087 kb on + strandat 751.105 kb on + strandat 751.106 kb on - strandat 751.106 kb on - strandat 751.127 kb on - strandat 751.186 kb on + strand, within DDA3937_RS03435at 751.187 kb on - strand, within DDA3937_RS03435at 751.189 kb on + strand, within DDA3937_RS03435at 751.189 kb on + strand, within DDA3937_RS03435at 751.189 kb on + strand, within DDA3937_RS03435at 751.189 kb on + strand, within DDA3937_RS03435at 751.213 kb on + strand, within DDA3937_RS03435at 751.213 kb on + strand, within DDA3937_RS03435at 751.214 kb on - strand, within DDA3937_RS03435at 751.214 kb on - strand, within DDA3937_RS03435at 751.304 kb on + strand, within DDA3937_RS03435at 751.305 kb on - strand, within DDA3937_RS03435at 751.305 kb on - strand, within DDA3937_RS03435at 751.424 kb on + strand, within DDA3937_RS03435at 751.425 kb on - strand, within DDA3937_RS03435at 751.559 kb on + strand, within DDA3937_RS03435at 751.560 kb on - strand, within DDA3937_RS03435at 751.603 kb on + strand, within DDA3937_RS03435at 751.604 kb on - strand, within DDA3937_RS03435at 751.604 kb on - strand, within DDA3937_RS03435at 751.693 kb on + strand, within DDA3937_RS03435at 751.694 kb on - strand, within DDA3937_RS03435at 751.694 kb on - strand, within DDA3937_RS03435at 751.766 kb on + strand, within DDA3937_RS03435at 751.766 kb on + strand, within DDA3937_RS03435at 751.766 kb on + strand, within DDA3937_RS03435at 751.767 kb on - strand, within DDA3937_RS03435at 751.767 kb on - strand, within DDA3937_RS03435at 751.817 kb on - strandat 751.888 kb on + strandat 751.889 kb on - strandat 751.936 kb on - strandat 752.088 kb on - strand, within DDA3937_RS03440at 752.088 kb on - strand, within DDA3937_RS03440at 752.102 kb on + strand, within DDA3937_RS03440at 752.103 kb on - strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.106 kb on + strand, within DDA3937_RS03440at 752.107 kb on - strand, within DDA3937_RS03440at 752.107 kb on - strand, within DDA3937_RS03440at 752.107 kb on - strand, within DDA3937_RS03440at 752.167 kb on + strand, within DDA3937_RS03440at 752.168 kb on - strand, within DDA3937_RS03440at 752.276 kb on + strand, within DDA3937_RS03440at 752.277 kb on - strand, within DDA3937_RS03440at 752.301 kb on + strand, within DDA3937_RS03440at 752.432 kb on + strand, within DDA3937_RS03440at 752.432 kb on + strand, within DDA3937_RS03440at 752.433 kb on - strand, within DDA3937_RS03440at 752.433 kb on - strand, within DDA3937_RS03440at 752.501 kb on + strand, within DDA3937_RS03440at 752.502 kb on - strand, within DDA3937_RS03440at 752.509 kb on + strand, within DDA3937_RS03440at 752.544 kb on + strand, within DDA3937_RS03440at 752.631 kb on + strand, within DDA3937_RS03440at 752.769 kb on + strandat 752.820 kb on - strandat 752.895 kb on + strand, within DDA3937_RS03445at 752.895 kb on + strand, within DDA3937_RS03445at 752.895 kb on + strand, within DDA3937_RS03445at 752.895 kb on + strand, within DDA3937_RS03445at 752.895 kb on + strand, within DDA3937_RS03445at 752.896 kb on - strand, within DDA3937_RS03445at 752.896 kb on - strand, within DDA3937_RS03445at 752.898 kb on + strand, within DDA3937_RS03445at 752.898 kb on + strand, within DDA3937_RS03445at 752.898 kb on + strand, within DDA3937_RS03445at 752.898 kb on + strand, within DDA3937_RS03445at 752.898 kb on + strand, within DDA3937_RS03445at 752.899 kb on - strand, within DDA3937_RS03445at 752.899 kb on - strand, within DDA3937_RS03445at 752.899 kb on - strand, within DDA3937_RS03445at 752.973 kb on + strand, within DDA3937_RS03445at 752.973 kb on + strand, within DDA3937_RS03445at 752.973 kb on + strand, within DDA3937_RS03445at 752.973 kb on + strand, within DDA3937_RS03445at 752.974 kb on - strand, within DDA3937_RS03445at 752.987 kb on - strand, within DDA3937_RS03445at 752.989 kb on + strand, within DDA3937_RS03445at 752.989 kb on + strandat 752.990 kb on - strand, within DDA3937_RS03445at 753.068 kb on - strand, within DDA3937_RS03445at 753.129 kb on + strandat 753.129 kb on + strand, within DDA3937_RS03445at 753.129 kb on + strand, within DDA3937_RS03445at 753.129 kb on + strand, within DDA3937_RS03445at 753.129 kb on + strand, within DDA3937_RS03445at 753.129 kb on + strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.130 kb on - strand, within DDA3937_RS03445at 753.132 kb on + strand, within DDA3937_RS03445at 753.149 kb on + strand, within DDA3937_RS03445at 753.198 kb on + strand, within DDA3937_RS03445at 753.198 kb on + strand, within DDA3937_RS03445at 753.198 kb on + strand, within DDA3937_RS03445at 753.199 kb on - strand, within DDA3937_RS03445at 753.199 kb on - strand, within DDA3937_RS03445at 753.199 kb on - strand, within DDA3937_RS03445at 753.199 kb on - strandat 753.199 kb on - strand, within DDA3937_RS03445at 753.199 kb on - strand, within DDA3937_RS03445at 753.234 kb on + strand, within DDA3937_RS03445at 753.234 kb on + strand, within DDA3937_RS03445at 753.234 kb on + strandat 753.235 kb on - strand, within DDA3937_RS03445at 753.235 kb on - strand, within DDA3937_RS03445at 753.238 kb on - strand, within DDA3937_RS03445at 753.238 kb on - strand, within DDA3937_RS03445at 753.238 kb on - strand, within DDA3937_RS03445at 753.269 kb on - strand, within DDA3937_RS03445at 753.419 kb on - strand, within DDA3937_RS03445at 753.419 kb on - strand, within DDA3937_RS03445at 753.420 kb on + strand, within DDA3937_RS03445at 753.420 kb on + strand, within DDA3937_RS03445at 753.420 kb on + strand, within DDA3937_RS03445at 753.420 kb on + strand, within DDA3937_RS03445at 753.420 kb on + strand, within DDA3937_RS03445at 753.421 kb on - strand, within DDA3937_RS03445at 753.421 kb on - strand, within DDA3937_RS03445at 753.421 kb on - strand, within DDA3937_RS03445at 753.431 kb on - strand, within DDA3937_RS03445at 753.518 kb on - strand, within DDA3937_RS03445at 753.540 kb on + strand, within DDA3937_RS03445at 753.540 kb on + strand, within DDA3937_RS03445at 753.541 kb on - strand, within DDA3937_RS03445at 753.555 kb on - strandat 753.641 kb on + strandat 753.642 kb on - strandat 753.677 kb on + strandat 753.677 kb on + strandat 753.677 kb on + strandat 753.677 kb on + strandat 753.677 kb on + strandat 753.678 kb on - strandat 753.678 kb on - strandat 753.678 kb on - strandat 753.678 kb on - strandat 753.693 kb on + strandat 753.694 kb on - strandat 753.743 kb on + strandat 753.748 kb on + strandat 753.748 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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751,039 + -0.5
751,040 - -1.7
751,040 - -0.3
751,040 - -0.0
751,045 - -0.6
751,045 - -0.5
751,045 - -0.7
751,045 - +1.3
751,052 - -1.0
751,087 + -0.3
751,105 + -3.5
751,106 - -0.6
751,106 - -0.6
751,127 - -1.6
751,186 + DDA3937_RS03435 0.17 -0.0
751,187 - DDA3937_RS03435 0.17 -0.7
751,189 + DDA3937_RS03435 0.17 -1.4
751,189 + DDA3937_RS03435 0.17 -1.9
751,189 + DDA3937_RS03435 0.17 -0.4
751,189 + DDA3937_RS03435 0.17 +0.6
751,213 + DDA3937_RS03435 0.20 -0.4
751,213 + DDA3937_RS03435 0.20 -0.3
751,214 - DDA3937_RS03435 0.20 +2.7
751,214 - DDA3937_RS03435 0.20 +0.1
751,304 + DDA3937_RS03435 0.31 +0.1
751,305 - DDA3937_RS03435 0.31 +0.3
751,305 - DDA3937_RS03435 0.31 -1.2
751,424 + DDA3937_RS03435 0.45 -1.7
751,425 - DDA3937_RS03435 0.46 +1.2
751,559 + DDA3937_RS03435 0.62 -0.2
751,560 - DDA3937_RS03435 0.62 -0.9
751,603 + DDA3937_RS03435 0.67 -0.2
751,604 - DDA3937_RS03435 0.67 -0.9
751,604 - DDA3937_RS03435 0.67 +2.6
751,693 + DDA3937_RS03435 0.78 +0.5
751,694 - DDA3937_RS03435 0.78 +0.0
751,694 - DDA3937_RS03435 0.78 +1.1
751,766 + DDA3937_RS03435 0.87 -2.4
751,766 + DDA3937_RS03435 0.87 +1.0
751,766 + DDA3937_RS03435 0.87 -1.0
751,767 - DDA3937_RS03435 0.87 -0.0
751,767 - DDA3937_RS03435 0.87 -0.4
751,817 - -2.3
751,888 + -0.3
751,889 - +0.2
751,936 - -1.2
752,088 - DDA3937_RS03440 0.23 -2.2
752,088 - DDA3937_RS03440 0.23 +0.6
752,102 + DDA3937_RS03440 0.25 +0.7
752,103 - DDA3937_RS03440 0.25 -0.9
752,106 + DDA3937_RS03440 0.25 -0.2
752,106 + DDA3937_RS03440 0.25 +5.8
752,106 + DDA3937_RS03440 0.25 -0.1
752,106 + DDA3937_RS03440 0.25 -0.9
752,106 + DDA3937_RS03440 0.25 -1.8
752,106 + DDA3937_RS03440 0.25 +0.1
752,106 + DDA3937_RS03440 0.25 -1.1
752,106 + DDA3937_RS03440 0.25 -0.8
752,107 - DDA3937_RS03440 0.25 -0.3
752,107 - DDA3937_RS03440 0.25 +0.1
752,107 - DDA3937_RS03440 0.25 +0.9
752,167 + DDA3937_RS03440 0.32 +0.8
752,168 - DDA3937_RS03440 0.32 -0.4
752,276 + DDA3937_RS03440 0.44 -0.8
752,277 - DDA3937_RS03440 0.44 -0.4
752,301 + DDA3937_RS03440 0.47 +0.7
752,432 + DDA3937_RS03440 0.62 +1.5
752,432 + DDA3937_RS03440 0.62 -1.3
752,433 - DDA3937_RS03440 0.62 -1.7
752,433 - DDA3937_RS03440 0.62 -1.3
752,501 + DDA3937_RS03440 0.70 -0.9
752,502 - DDA3937_RS03440 0.70 -1.2
752,509 + DDA3937_RS03440 0.71 +0.3
752,544 + DDA3937_RS03440 0.75 -0.1
752,631 + DDA3937_RS03440 0.84 -2.0
752,769 + +1.1
752,820 - -0.1
752,895 + DDA3937_RS03445 0.16 -1.9
752,895 + DDA3937_RS03445 0.16 -0.2
752,895 + DDA3937_RS03445 0.16 +1.0
752,895 + DDA3937_RS03445 0.16 +0.5
752,895 + DDA3937_RS03445 0.16 -0.5
752,896 - DDA3937_RS03445 0.16 -0.6
752,896 - DDA3937_RS03445 0.16 -2.0
752,898 + DDA3937_RS03445 0.16 +0.1
752,898 + DDA3937_RS03445 0.16 -0.7
752,898 + DDA3937_RS03445 0.16 +0.3
752,898 + DDA3937_RS03445 0.16 -0.3
752,898 + DDA3937_RS03445 0.16 -0.0
752,899 - DDA3937_RS03445 0.16 -1.4
752,899 - DDA3937_RS03445 0.16 +0.1
752,899 - DDA3937_RS03445 0.16 -2.0
752,973 + DDA3937_RS03445 0.25 -0.4
752,973 + DDA3937_RS03445 0.25 +1.3
752,973 + DDA3937_RS03445 0.25 +0.6
752,973 + DDA3937_RS03445 0.25 -0.6
752,974 - DDA3937_RS03445 0.25 -0.2
752,987 - DDA3937_RS03445 0.26 -0.2
752,989 + DDA3937_RS03445 0.26 -0.2
752,989 + -0.9
752,990 - DDA3937_RS03445 0.26 +0.4
753,068 - DDA3937_RS03445 0.35 +0.2
753,129 + +0.1
753,129 + DDA3937_RS03445 0.42 +0.3
753,129 + DDA3937_RS03445 0.42 -0.3
753,129 + DDA3937_RS03445 0.42 -1.2
753,129 + DDA3937_RS03445 0.42 -0.9
753,129 + DDA3937_RS03445 0.42 -0.0
753,130 - DDA3937_RS03445 0.42 -0.1
753,130 - DDA3937_RS03445 0.42 -0.5
753,130 - DDA3937_RS03445 0.42 +1.9
753,130 - DDA3937_RS03445 0.42 -0.7
753,130 - DDA3937_RS03445 0.42 -3.0
753,130 - DDA3937_RS03445 0.42 -0.8
753,130 - DDA3937_RS03445 0.42 -0.6
753,130 - DDA3937_RS03445 0.42 -0.1
753,130 - DDA3937_RS03445 0.42 -0.5
753,130 - DDA3937_RS03445 0.42 +0.5
753,130 - DDA3937_RS03445 0.42 +0.5
753,132 + DDA3937_RS03445 0.43 +0.1
753,149 + DDA3937_RS03445 0.45 -0.2
753,198 + DDA3937_RS03445 0.50 -1.3
753,198 + DDA3937_RS03445 0.50 -0.6
753,198 + DDA3937_RS03445 0.50 -1.4
753,199 - DDA3937_RS03445 0.50 +0.4
753,199 - DDA3937_RS03445 0.50 -0.8
753,199 - DDA3937_RS03445 0.50 -1.4
753,199 - -0.4
753,199 - DDA3937_RS03445 0.50 -0.3
753,199 - DDA3937_RS03445 0.50 -0.0
753,234 + DDA3937_RS03445 0.54 -0.1
753,234 + DDA3937_RS03445 0.54 +2.3
753,234 + -0.4
753,235 - DDA3937_RS03445 0.55 -1.4
753,235 - DDA3937_RS03445 0.55 -0.9
753,238 - DDA3937_RS03445 0.55 -2.9
753,238 - DDA3937_RS03445 0.55 -1.7
753,238 - DDA3937_RS03445 0.55 +0.7
753,269 - DDA3937_RS03445 0.58 -1.0
753,419 - DDA3937_RS03445 0.76 +0.4
753,419 - DDA3937_RS03445 0.76 -0.7
753,420 + DDA3937_RS03445 0.76 +0.5
753,420 + DDA3937_RS03445 0.76 +1.3
753,420 + DDA3937_RS03445 0.76 -0.5
753,420 + DDA3937_RS03445 0.76 +0.3
753,420 + DDA3937_RS03445 0.76 +1.1
753,421 - DDA3937_RS03445 0.76 -0.6
753,421 - DDA3937_RS03445 0.76 -0.3
753,421 - DDA3937_RS03445 0.76 +0.6
753,431 - DDA3937_RS03445 0.77 -0.3
753,518 - DDA3937_RS03445 0.87 +0.8
753,540 + DDA3937_RS03445 0.89 -0.0
753,540 + DDA3937_RS03445 0.89 -1.0
753,541 - DDA3937_RS03445 0.90 +0.5
753,555 - +1.0
753,641 + -1.1
753,642 - +0.1
753,677 + -0.6
753,677 + +1.3
753,677 + +1.6
753,677 + -0.2
753,677 + -0.4
753,678 - -1.3
753,678 - +1.1
753,678 - -1.7
753,678 - -0.1
753,693 + +1.5
753,694 - +0.6
753,743 + -0.4
753,748 + -0.2
753,748 + +0.9

Or see this region's nucleotide sequence