Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS02570 and DDA3937_RS02575 are separated by 1 nucleotides DDA3937_RS02575 and DDA3937_RS02580 are separated by 2 nucleotides
DDA3937_RS02570: DDA3937_RS02570 - outer membrane beta-barrel protein, at 569,163 to 570,449
_RS02570
DDA3937_RS02575: DDA3937_RS02575 - polysaccharide export protein, at 570,451 to 571,008
_RS02575
DDA3937_RS02580: DDA3937_RS02580 - polysaccharide biosynthesis tyrosine autokinase, at 571,011 to 573,143
_RS02580
Position (kb) 570
571
572 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 569.457 kb on + strand, within DDA3937_RS02570 at 569.457 kb on + strand, within DDA3937_RS02570 at 569.457 kb on + strand, within DDA3937_RS02570 at 569.457 kb on + strand, within DDA3937_RS02570 at 569.458 kb on - strand, within DDA3937_RS02570 at 569.568 kb on - strand, within DDA3937_RS02570 at 569.648 kb on - strand, within DDA3937_RS02570 at 569.648 kb on - strand, within DDA3937_RS02570 at 569.648 kb on - strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.654 kb on + strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand, within DDA3937_RS02570 at 569.655 kb on - strand at 569.658 kb on + strand, within DDA3937_RS02570 at 569.659 kb on - strand, within DDA3937_RS02570 at 569.705 kb on + strand, within DDA3937_RS02570 at 569.738 kb on + strand, within DDA3937_RS02570 at 569.739 kb on - strand, within DDA3937_RS02570 at 569.745 kb on - strand, within DDA3937_RS02570 at 569.755 kb on - strand, within DDA3937_RS02570 at 569.760 kb on + strand, within DDA3937_RS02570 at 569.763 kb on - strand, within DDA3937_RS02570 at 569.766 kb on + strand, within DDA3937_RS02570 at 569.766 kb on + strand, within DDA3937_RS02570 at 569.766 kb on + strand, within DDA3937_RS02570 at 569.767 kb on - strand, within DDA3937_RS02570 at 569.767 kb on - strand, within DDA3937_RS02570 at 569.767 kb on - strand, within DDA3937_RS02570 at 569.767 kb on - strand, within DDA3937_RS02570 at 569.813 kb on - strand, within DDA3937_RS02570 at 569.823 kb on + strand, within DDA3937_RS02570 at 569.907 kb on + strand, within DDA3937_RS02570 at 569.907 kb on + strand, within DDA3937_RS02570 at 569.907 kb on + strand, within DDA3937_RS02570 at 569.908 kb on - strand, within DDA3937_RS02570 at 569.927 kb on + strand, within DDA3937_RS02570 at 569.977 kb on + strand, within DDA3937_RS02570 at 569.979 kb on + strand, within DDA3937_RS02570 at 569.979 kb on + strand, within DDA3937_RS02570 at 569.979 kb on + strand, within DDA3937_RS02570 at 569.980 kb on - strand, within DDA3937_RS02570 at 569.980 kb on - strand, within DDA3937_RS02570 at 570.035 kb on + strand, within DDA3937_RS02570 at 570.059 kb on + strand, within DDA3937_RS02570 at 570.095 kb on + strand, within DDA3937_RS02570 at 570.126 kb on - strand, within DDA3937_RS02570 at 570.141 kb on + strand, within DDA3937_RS02570 at 570.142 kb on - strand, within DDA3937_RS02570 at 570.146 kb on + strand, within DDA3937_RS02570 at 570.146 kb on + strand, within DDA3937_RS02570 at 570.153 kb on + strand, within DDA3937_RS02570 at 570.198 kb on + strand, within DDA3937_RS02570 at 570.199 kb on - strand, within DDA3937_RS02570 at 570.204 kb on + strand, within DDA3937_RS02570 at 570.204 kb on + strand, within DDA3937_RS02570 at 570.205 kb on - strand, within DDA3937_RS02570 at 570.220 kb on - strand, within DDA3937_RS02570 at 570.228 kb on + strand, within DDA3937_RS02570 at 570.280 kb on - strand, within DDA3937_RS02570 at 570.280 kb on - strand, within DDA3937_RS02570 at 570.280 kb on - strand, within DDA3937_RS02570 at 570.282 kb on - strand, within DDA3937_RS02570 at 570.296 kb on + strand, within DDA3937_RS02570 at 570.297 kb on - strand, within DDA3937_RS02570 at 570.300 kb on - strand, within DDA3937_RS02570 at 570.310 kb on + strand, within DDA3937_RS02570 at 570.315 kb on + strand, within DDA3937_RS02570 at 570.315 kb on + strand, within DDA3937_RS02570 at 570.315 kb on + strand, within DDA3937_RS02570 at 570.315 kb on + strand, within DDA3937_RS02570 at 570.315 kb on + strand, within DDA3937_RS02570 at 570.316 kb on - strand, within DDA3937_RS02570 at 570.331 kb on + strand at 570.332 kb on - strand at 570.332 kb on - strand at 570.332 kb on - strand at 570.410 kb on + strand at 570.422 kb on + strand at 570.434 kb on + strand at 570.447 kb on + strand at 570.447 kb on + strand at 570.459 kb on - strand at 570.566 kb on + strand, within DDA3937_RS02575 at 570.585 kb on - strand, within DDA3937_RS02575 at 570.597 kb on - strand, within DDA3937_RS02575 at 570.599 kb on - strand, within DDA3937_RS02575 at 570.636 kb on + strand, within DDA3937_RS02575 at 570.651 kb on + strand, within DDA3937_RS02575 at 570.652 kb on - strand, within DDA3937_RS02575 at 570.652 kb on - strand, within DDA3937_RS02575 at 570.661 kb on + strand, within DDA3937_RS02575 at 570.662 kb on - strand, within DDA3937_RS02575 at 570.662 kb on - strand, within DDA3937_RS02575 at 570.662 kb on - strand, within DDA3937_RS02575 at 570.664 kb on - strand, within DDA3937_RS02575 at 570.664 kb on - strand, within DDA3937_RS02575 at 570.664 kb on - strand, within DDA3937_RS02575 at 570.739 kb on + strand, within DDA3937_RS02575 at 570.739 kb on + strand, within DDA3937_RS02575 at 570.740 kb on - strand, within DDA3937_RS02575 at 570.790 kb on + strand, within DDA3937_RS02575 at 570.790 kb on + strand, within DDA3937_RS02575 at 570.790 kb on + strand, within DDA3937_RS02575 at 570.791 kb on - strand, within DDA3937_RS02575 at 570.796 kb on - strand, within DDA3937_RS02575 at 570.796 kb on - strand, within DDA3937_RS02575 at 570.796 kb on - strand, within DDA3937_RS02575 at 570.796 kb on - strand, within DDA3937_RS02575 at 570.796 kb on - strand, within DDA3937_RS02575 at 570.823 kb on + strand, within DDA3937_RS02575 at 570.829 kb on + strand, within DDA3937_RS02575 at 570.829 kb on + strand, within DDA3937_RS02575 at 570.842 kb on + strand, within DDA3937_RS02575 at 570.935 kb on + strand, within DDA3937_RS02575 at 570.953 kb on + strand at 570.953 kb on + strand at 570.954 kb on - strand at 571.018 kb on + strand at 571.018 kb on + strand at 571.018 kb on + strand at 571.019 kb on - strand at 571.019 kb on - strand at 571.019 kb on - strand at 571.022 kb on + strand at 571.022 kb on + strand at 571.022 kb on + strand at 571.022 kb on + strand at 571.023 kb on - strand at 571.023 kb on - strand at 571.023 kb on - strand at 571.170 kb on + strand at 571.170 kb on + strand at 571.170 kb on + strand at 571.170 kb on + strand at 571.170 kb on + strand at 571.170 kb on + strand at 571.170 kb on + strand at 571.170 kb on + strand at 571.170 kb on + strand at 571.170 kb on + strand at 571.171 kb on - strand at 571.171 kb on - strand at 571.171 kb on - strand at 571.171 kb on - strand at 571.171 kb on - strand at 571.171 kb on - strand at 571.171 kb on - strand at 571.171 kb on - strand at 571.171 kb on - strand at 571.171 kb on - strand at 571.171 kb on - strand at 571.242 kb on + strand, within DDA3937_RS02580 at 571.242 kb on + strand, within DDA3937_RS02580 at 571.243 kb on - strand, within DDA3937_RS02580 at 571.243 kb on - strand, within DDA3937_RS02580 at 571.264 kb on - strand, within DDA3937_RS02580 at 571.278 kb on + strand, within DDA3937_RS02580 at 571.279 kb on - strand, within DDA3937_RS02580 at 571.298 kb on + strand, within DDA3937_RS02580 at 571.298 kb on + strand, within DDA3937_RS02580 at 571.361 kb on + strand, within DDA3937_RS02580 at 571.421 kb on + strand, within DDA3937_RS02580 at 571.475 kb on + strand, within DDA3937_RS02580 at 571.475 kb on + strand, within DDA3937_RS02580 at 571.476 kb on - strand, within DDA3937_RS02580 at 571.476 kb on - strand, within DDA3937_RS02580 at 571.482 kb on + strand, within DDA3937_RS02580 at 571.542 kb on - strand, within DDA3937_RS02580 at 571.548 kb on + strand, within DDA3937_RS02580 at 571.548 kb on + strand, within DDA3937_RS02580 at 571.550 kb on + strand, within DDA3937_RS02580 at 571.551 kb on - strand, within DDA3937_RS02580 at 571.665 kb on - strand, within DDA3937_RS02580 at 571.782 kb on + strand, within DDA3937_RS02580 at 571.808 kb on + strand, within DDA3937_RS02580 at 571.809 kb on - strand, within DDA3937_RS02580 at 571.809 kb on - strand, within DDA3937_RS02580 at 571.841 kb on + strand, within DDA3937_RS02580 at 571.841 kb on + strand, within DDA3937_RS02580 at 571.842 kb on - strand, within DDA3937_RS02580 at 571.847 kb on + strand, within DDA3937_RS02580 at 571.847 kb on + strand, within DDA3937_RS02580 at 571.848 kb on - strand, within DDA3937_RS02580 at 571.903 kb on + strand, within DDA3937_RS02580 at 571.905 kb on + strand, within DDA3937_RS02580 at 571.906 kb on - strand, within DDA3937_RS02580 at 571.937 kb on + strand, within DDA3937_RS02580 at 571.938 kb on - strand, within DDA3937_RS02580 at 571.999 kb on + strand, within DDA3937_RS02580 at 572.000 kb on - strand, within DDA3937_RS02580
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 569,457 + DDA3937_RS02570 0.23 +0.8 569,457 + DDA3937_RS02570 0.23 +0.2 569,457 + DDA3937_RS02570 0.23 +0.6 569,457 + DDA3937_RS02570 0.23 -0.1 569,458 - DDA3937_RS02570 0.23 -0.4 569,568 - DDA3937_RS02570 0.31 +1.2 569,648 - DDA3937_RS02570 0.38 -0.1 569,648 - DDA3937_RS02570 0.38 +0.4 569,648 - DDA3937_RS02570 0.38 -0.6 569,654 + DDA3937_RS02570 0.38 -0.0 569,654 + DDA3937_RS02570 0.38 -1.8 569,654 + DDA3937_RS02570 0.38 -0.5 569,654 + DDA3937_RS02570 0.38 -0.1 569,654 + DDA3937_RS02570 0.38 -0.7 569,654 + DDA3937_RS02570 0.38 -1.3 569,654 + DDA3937_RS02570 0.38 +0.7 569,654 + DDA3937_RS02570 0.38 -0.2 569,654 + DDA3937_RS02570 0.38 +1.2 569,654 + DDA3937_RS02570 0.38 -0.6 569,654 + DDA3937_RS02570 0.38 +0.9 569,654 + DDA3937_RS02570 0.38 -0.9 569,654 + DDA3937_RS02570 0.38 +2.0 569,655 - DDA3937_RS02570 0.38 -0.4 569,655 - DDA3937_RS02570 0.38 -0.8 569,655 - DDA3937_RS02570 0.38 -1.0 569,655 - DDA3937_RS02570 0.38 -1.6 569,655 - DDA3937_RS02570 0.38 -1.3 569,655 - DDA3937_RS02570 0.38 -0.8 569,655 - DDA3937_RS02570 0.38 -0.8 569,655 - +0.2 569,655 - DDA3937_RS02570 0.38 -1.6 569,655 - DDA3937_RS02570 0.38 +3.3 569,655 - DDA3937_RS02570 0.38 -1.9 569,655 - +1.6 569,658 + DDA3937_RS02570 0.38 +0.3 569,659 - DDA3937_RS02570 0.39 +1.2 569,705 + DDA3937_RS02570 0.42 -1.7 569,738 + DDA3937_RS02570 0.45 -0.3 569,739 - DDA3937_RS02570 0.45 -0.1 569,745 - DDA3937_RS02570 0.45 -0.3 569,755 - DDA3937_RS02570 0.46 -2.2 569,760 + DDA3937_RS02570 0.46 +1.3 569,763 - DDA3937_RS02570 0.47 -0.6 569,766 + DDA3937_RS02570 0.47 -4.1 569,766 + DDA3937_RS02570 0.47 +0.4 569,766 + DDA3937_RS02570 0.47 -0.3 569,767 - DDA3937_RS02570 0.47 +1.2 569,767 - DDA3937_RS02570 0.47 -1.9 569,767 - DDA3937_RS02570 0.47 -1.8 569,767 - DDA3937_RS02570 0.47 -2.3 569,813 - DDA3937_RS02570 0.51 +0.1 569,823 + DDA3937_RS02570 0.51 -0.1 569,907 + DDA3937_RS02570 0.58 -0.7 569,907 + DDA3937_RS02570 0.58 -0.6 569,907 + DDA3937_RS02570 0.58 -0.6 569,908 - DDA3937_RS02570 0.58 -0.9 569,927 + DDA3937_RS02570 0.59 +0.4 569,977 + DDA3937_RS02570 0.63 +0.5 569,979 + DDA3937_RS02570 0.63 +1.9 569,979 + DDA3937_RS02570 0.63 +0.2 569,979 + DDA3937_RS02570 0.63 +0.1 569,980 - DDA3937_RS02570 0.63 +0.5 569,980 - DDA3937_RS02570 0.63 -1.1 570,035 + DDA3937_RS02570 0.68 -1.6 570,059 + DDA3937_RS02570 0.70 -0.4 570,095 + DDA3937_RS02570 0.72 -1.1 570,126 - DDA3937_RS02570 0.75 -0.1 570,141 + DDA3937_RS02570 0.76 +0.7 570,142 - DDA3937_RS02570 0.76 -3.2 570,146 + DDA3937_RS02570 0.76 -1.8 570,146 + DDA3937_RS02570 0.76 -1.9 570,153 + DDA3937_RS02570 0.77 +0.3 570,198 + DDA3937_RS02570 0.80 -2.8 570,199 - DDA3937_RS02570 0.80 -2.9 570,204 + DDA3937_RS02570 0.81 -1.5 570,204 + DDA3937_RS02570 0.81 +1.2 570,205 - DDA3937_RS02570 0.81 -2.8 570,220 - DDA3937_RS02570 0.82 -0.0 570,228 + DDA3937_RS02570 0.83 -0.0 570,280 - DDA3937_RS02570 0.87 -0.4 570,280 - DDA3937_RS02570 0.87 +0.3 570,280 - DDA3937_RS02570 0.87 -0.2 570,282 - DDA3937_RS02570 0.87 +0.8 570,296 + DDA3937_RS02570 0.88 -0.3 570,297 - DDA3937_RS02570 0.88 -1.1 570,300 - DDA3937_RS02570 0.88 +0.0 570,310 + DDA3937_RS02570 0.89 -0.3 570,315 + DDA3937_RS02570 0.90 -0.3 570,315 + DDA3937_RS02570 0.90 -1.7 570,315 + DDA3937_RS02570 0.90 -0.1 570,315 + DDA3937_RS02570 0.90 -1.7 570,315 + DDA3937_RS02570 0.90 -0.1 570,316 - DDA3937_RS02570 0.90 -0.4 570,331 + -2.6 570,332 - -1.3 570,332 - -0.6 570,332 - +1.7 570,410 + -2.6 570,422 + -0.2 570,434 + -1.6 570,447 + -2.6 570,447 + +1.4 570,459 - +0.5 570,566 + DDA3937_RS02575 0.21 -0.5 570,585 - DDA3937_RS02575 0.24 -1.6 570,597 - DDA3937_RS02575 0.26 -0.3 570,599 - DDA3937_RS02575 0.27 -0.6 570,636 + DDA3937_RS02575 0.33 -0.3 570,651 + DDA3937_RS02575 0.36 -0.2 570,652 - DDA3937_RS02575 0.36 -2.4 570,652 - DDA3937_RS02575 0.36 +0.8 570,661 + DDA3937_RS02575 0.38 -1.1 570,662 - DDA3937_RS02575 0.38 -1.7 570,662 - DDA3937_RS02575 0.38 -0.7 570,662 - DDA3937_RS02575 0.38 -0.1 570,664 - DDA3937_RS02575 0.38 -1.0 570,664 - DDA3937_RS02575 0.38 +0.0 570,664 - DDA3937_RS02575 0.38 -0.1 570,739 + DDA3937_RS02575 0.52 -1.3 570,739 + DDA3937_RS02575 0.52 -1.6 570,740 - DDA3937_RS02575 0.52 -0.2 570,790 + DDA3937_RS02575 0.61 -0.5 570,790 + DDA3937_RS02575 0.61 -2.7 570,790 + DDA3937_RS02575 0.61 -1.3 570,791 - DDA3937_RS02575 0.61 -1.1 570,796 - DDA3937_RS02575 0.62 -1.6 570,796 - DDA3937_RS02575 0.62 -1.0 570,796 - DDA3937_RS02575 0.62 -0.0 570,796 - DDA3937_RS02575 0.62 -0.3 570,796 - DDA3937_RS02575 0.62 -0.1 570,823 + DDA3937_RS02575 0.67 -1.5 570,829 + DDA3937_RS02575 0.68 -0.3 570,829 + DDA3937_RS02575 0.68 -0.6 570,842 + DDA3937_RS02575 0.70 +0.8 570,935 + DDA3937_RS02575 0.87 -0.0 570,953 + -1.7 570,953 + -0.5 570,954 - -1.4 571,018 + +0.7 571,018 + -0.6 571,018 + -1.2 571,019 - +0.7 571,019 - -0.8 571,019 - -0.2 571,022 + -1.3 571,022 + +0.4 571,022 + -0.7 571,022 + +1.4 571,023 - -2.0 571,023 - -1.7 571,023 - -1.3 571,170 + -1.0 571,170 + -1.7 571,170 + +1.1 571,170 + +0.5 571,170 + -0.0 571,170 + -0.8 571,170 + +0.4 571,170 + +1.1 571,170 + +1.0 571,170 + -1.6 571,171 - -1.5 571,171 - -2.4 571,171 - -0.3 571,171 - +0.5 571,171 - +2.0 571,171 - -1.2 571,171 - -0.8 571,171 - -1.7 571,171 - -0.3 571,171 - -0.3 571,171 - +3.3 571,242 + DDA3937_RS02580 0.11 +0.5 571,242 + DDA3937_RS02580 0.11 -0.5 571,243 - DDA3937_RS02580 0.11 -1.1 571,243 - DDA3937_RS02580 0.11 +1.0 571,264 - DDA3937_RS02580 0.12 +0.3 571,278 + DDA3937_RS02580 0.13 -0.3 571,279 - DDA3937_RS02580 0.13 -1.5 571,298 + DDA3937_RS02580 0.13 +0.9 571,298 + DDA3937_RS02580 0.13 -0.1 571,361 + DDA3937_RS02580 0.16 +0.5 571,421 + DDA3937_RS02580 0.19 -0.1 571,475 + DDA3937_RS02580 0.22 +1.2 571,475 + DDA3937_RS02580 0.22 -1.2 571,476 - DDA3937_RS02580 0.22 -1.2 571,476 - DDA3937_RS02580 0.22 -0.8 571,482 + DDA3937_RS02580 0.22 +0.6 571,542 - DDA3937_RS02580 0.25 -2.4 571,548 + DDA3937_RS02580 0.25 -1.6 571,548 + DDA3937_RS02580 0.25 +3.6 571,550 + DDA3937_RS02580 0.25 -0.2 571,551 - DDA3937_RS02580 0.25 -0.5 571,665 - DDA3937_RS02580 0.31 -0.8 571,782 + DDA3937_RS02580 0.36 +0.5 571,808 + DDA3937_RS02580 0.37 +0.0 571,809 - DDA3937_RS02580 0.37 +0.5 571,809 - DDA3937_RS02580 0.37 +0.4 571,841 + DDA3937_RS02580 0.39 +0.0 571,841 + DDA3937_RS02580 0.39 +1.0 571,842 - DDA3937_RS02580 0.39 -0.6 571,847 + DDA3937_RS02580 0.39 +0.4 571,847 + DDA3937_RS02580 0.39 +0.2 571,848 - DDA3937_RS02580 0.39 -0.9 571,903 + DDA3937_RS02580 0.42 -0.0 571,905 + DDA3937_RS02580 0.42 -1.3 571,906 - DDA3937_RS02580 0.42 +0.5 571,937 + DDA3937_RS02580 0.43 -0.3 571,938 - DDA3937_RS02580 0.43 +1.3 571,999 + DDA3937_RS02580 0.46 -0.7 572,000 - DDA3937_RS02580 0.46 +0.9
Or see this region's nucleotide sequence