Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02255

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS02250 and DDA3937_RS02255 are separated by 377 nucleotidesDDA3937_RS02255 and DDA3937_RS02260 are separated by 242 nucleotides DDA3937_RS02250: DDA3937_RS02250 - M20 family metallopeptidase, at 498,300 to 499,718 _RS02250 DDA3937_RS02255: DDA3937_RS02255 - LysR family transcriptional regulator, at 500,096 to 501,028 _RS02255 DDA3937_RS02260: DDA3937_RS02260 - 1-aminocyclopropane-1-carboxylate deaminase, at 501,271 to 502,287 _RS02260 Position (kb) 500 501 502Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 499.193 kb on - strand, within DDA3937_RS02250at 499.193 kb on - strand, within DDA3937_RS02250at 499.193 kb on - strand, within DDA3937_RS02250at 499.194 kb on + strand, within DDA3937_RS02250at 499.289 kb on + strand, within DDA3937_RS02250at 499.289 kb on + strandat 499.290 kb on - strand, within DDA3937_RS02250at 499.297 kb on - strand, within DDA3937_RS02250at 499.301 kb on - strand, within DDA3937_RS02250at 499.301 kb on - strand, within DDA3937_RS02250at 499.301 kb on - strand, within DDA3937_RS02250at 499.334 kb on + strand, within DDA3937_RS02250at 499.335 kb on - strand, within DDA3937_RS02250at 499.335 kb on - strand, within DDA3937_RS02250at 499.569 kb on + strand, within DDA3937_RS02250at 499.678 kb on - strandat 499.694 kb on - strandat 499.724 kb on + strandat 499.725 kb on - strandat 499.725 kb on - strandat 499.725 kb on - strandat 499.725 kb on - strandat 499.743 kb on - strandat 499.746 kb on + strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.747 kb on - strandat 499.755 kb on + strandat 499.755 kb on + strandat 499.756 kb on - strandat 499.756 kb on - strandat 499.808 kb on + strandat 499.896 kb on + strandat 499.896 kb on + strandat 499.897 kb on - strandat 499.995 kb on + strandat 499.996 kb on - strandat 500.005 kb on - strandat 500.020 kb on + strandat 500.020 kb on + strandat 500.020 kb on + strandat 500.071 kb on - strandat 500.101 kb on + strandat 500.101 kb on + strandat 500.101 kb on + strandat 500.102 kb on - strandat 500.117 kb on + strandat 500.118 kb on - strandat 500.122 kb on + strandat 500.123 kb on - strandat 500.258 kb on - strand, within DDA3937_RS02255at 500.462 kb on + strand, within DDA3937_RS02255at 500.463 kb on - strand, within DDA3937_RS02255at 500.499 kb on + strand, within DDA3937_RS02255at 500.500 kb on - strand, within DDA3937_RS02255at 500.500 kb on - strand, within DDA3937_RS02255at 500.667 kb on + strand, within DDA3937_RS02255at 500.774 kb on + strand, within DDA3937_RS02255at 500.774 kb on + strand, within DDA3937_RS02255at 500.774 kb on + strand, within DDA3937_RS02255at 500.774 kb on + strand, within DDA3937_RS02255at 500.774 kb on + strand, within DDA3937_RS02255at 500.775 kb on - strand, within DDA3937_RS02255at 500.780 kb on + strand, within DDA3937_RS02255at 500.780 kb on + strand, within DDA3937_RS02255at 500.780 kb on + strand, within DDA3937_RS02255at 500.780 kb on + strand, within DDA3937_RS02255at 500.780 kb on + strand, within DDA3937_RS02255at 500.780 kb on + strand, within DDA3937_RS02255at 500.780 kb on + strand, within DDA3937_RS02255at 500.781 kb on - strand, within DDA3937_RS02255at 500.781 kb on - strand, within DDA3937_RS02255at 500.781 kb on - strand, within DDA3937_RS02255at 500.781 kb on - strand, within DDA3937_RS02255at 500.791 kb on + strand, within DDA3937_RS02255at 500.896 kb on + strand, within DDA3937_RS02255at 500.896 kb on + strand, within DDA3937_RS02255at 500.896 kb on + strand, within DDA3937_RS02255at 500.896 kb on + strand, within DDA3937_RS02255at 500.896 kb on + strand, within DDA3937_RS02255at 500.985 kb on - strandat 500.985 kb on - strandat 501.183 kb on + strandat 501.184 kb on - strandat 501.296 kb on - strandat 501.302 kb on + strandat 501.350 kb on - strandat 501.374 kb on - strand, within DDA3937_RS02260at 501.439 kb on + strand, within DDA3937_RS02260at 501.439 kb on + strand, within DDA3937_RS02260at 501.440 kb on - strand, within DDA3937_RS02260at 501.440 kb on - strand, within DDA3937_RS02260at 501.556 kb on - strand, within DDA3937_RS02260at 501.633 kb on + strand, within DDA3937_RS02260at 501.633 kb on + strand, within DDA3937_RS02260at 501.844 kb on + strand, within DDA3937_RS02260at 501.844 kb on + strand, within DDA3937_RS02260at 501.845 kb on - strand, within DDA3937_RS02260at 501.977 kb on + strand, within DDA3937_RS02260at 501.978 kb on - strand, within DDA3937_RS02260at 501.978 kb on - strand, within DDA3937_RS02260

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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499,193 - DDA3937_RS02250 0.63 -0.3
499,193 - DDA3937_RS02250 0.63 +0.8
499,193 - DDA3937_RS02250 0.63 -0.3
499,194 + DDA3937_RS02250 0.63 -0.1
499,289 + DDA3937_RS02250 0.70 -0.3
499,289 + -0.3
499,290 - DDA3937_RS02250 0.70 +1.9
499,297 - DDA3937_RS02250 0.70 -0.8
499,301 - DDA3937_RS02250 0.71 -0.2
499,301 - DDA3937_RS02250 0.71 +0.6
499,301 - DDA3937_RS02250 0.71 -1.4
499,334 + DDA3937_RS02250 0.73 +0.0
499,335 - DDA3937_RS02250 0.73 +0.3
499,335 - DDA3937_RS02250 0.73 -0.1
499,569 + DDA3937_RS02250 0.89 +1.9
499,678 - -0.5
499,694 - +0.2
499,724 + -2.5
499,725 - +0.0
499,725 - +0.4
499,725 - -1.6
499,725 - -0.9
499,743 - +0.3
499,746 + +0.1
499,747 - +0.1
499,747 - +1.3
499,747 - -2.1
499,747 - +0.5
499,755 + +0.0
499,755 + +0.3
499,756 - +0.9
499,756 - -0.1
499,808 + +0.2
499,896 + -1.1
499,896 + -0.2
499,897 - +0.1
499,995 + -0.9
499,996 - +1.0
500,005 - -0.4
500,020 + -1.0
500,020 + +0.3
500,020 + -0.3
500,071 - +1.6
500,101 + +2.7
500,101 + -0.7
500,101 + -0.5
500,102 - -0.2
500,117 + -1.1
500,118 - +0.3
500,122 + -1.6
500,123 - -0.3
500,258 - DDA3937_RS02255 0.17 -0.6
500,462 + DDA3937_RS02255 0.39 -0.5
500,463 - DDA3937_RS02255 0.39 +0.3
500,499 + DDA3937_RS02255 0.43 +0.5
500,500 - DDA3937_RS02255 0.43 -0.7
500,500 - DDA3937_RS02255 0.43 -0.3
500,667 + DDA3937_RS02255 0.61 -1.9
500,774 + DDA3937_RS02255 0.73 +0.5
500,774 + DDA3937_RS02255 0.73 +0.2
500,774 + DDA3937_RS02255 0.73 -0.4
500,774 + DDA3937_RS02255 0.73 -0.2
500,774 + DDA3937_RS02255 0.73 -1.7
500,775 - DDA3937_RS02255 0.73 -0.9
500,780 + DDA3937_RS02255 0.73 +0.3
500,780 + DDA3937_RS02255 0.73 -1.4
500,780 + DDA3937_RS02255 0.73 -2.5
500,780 + DDA3937_RS02255 0.73 -0.2
500,780 + DDA3937_RS02255 0.73 +0.1
500,780 + DDA3937_RS02255 0.73 -0.2
500,780 + DDA3937_RS02255 0.73 -1.1
500,781 - DDA3937_RS02255 0.73 -1.3
500,781 - DDA3937_RS02255 0.73 -1.1
500,781 - DDA3937_RS02255 0.73 -0.6
500,781 - DDA3937_RS02255 0.73 -1.7
500,791 + DDA3937_RS02255 0.74 -0.2
500,896 + DDA3937_RS02255 0.86 +0.0
500,896 + DDA3937_RS02255 0.86 -0.2
500,896 + DDA3937_RS02255 0.86 -0.7
500,896 + DDA3937_RS02255 0.86 +0.5
500,896 + DDA3937_RS02255 0.86 -3.3
500,985 - +0.6
500,985 - -1.3
501,183 + -2.3
501,184 - -1.6
501,296 - +0.6
501,302 + -1.2
501,350 - -0.1
501,374 - DDA3937_RS02260 0.10 -0.4
501,439 + DDA3937_RS02260 0.17 +0.0
501,439 + DDA3937_RS02260 0.17 -0.7
501,440 - DDA3937_RS02260 0.17 +0.7
501,440 - DDA3937_RS02260 0.17 -0.6
501,556 - DDA3937_RS02260 0.28 +0.0
501,633 + DDA3937_RS02260 0.36 -0.4
501,633 + DDA3937_RS02260 0.36 +0.1
501,844 + DDA3937_RS02260 0.56 -0.7
501,844 + DDA3937_RS02260 0.56 -0.8
501,845 - DDA3937_RS02260 0.56 +1.3
501,977 + DDA3937_RS02260 0.69 +0.6
501,978 - DDA3937_RS02260 0.70 -0.3
501,978 - DDA3937_RS02260 0.70 +0.2

Or see this region's nucleotide sequence