Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS02190

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDDA3937_RS02185 and DDA3937_RS02190 are separated by 16 nucleotidesDDA3937_RS02190 and DDA3937_RS02195 overlap by 8 nucleotides DDA3937_RS02185: DDA3937_RS02185 - sugar ABC transporter ATP-binding protein, at 484,477 to 486,036 _RS02185 DDA3937_RS02190: DDA3937_RS02190 - ABC transporter permease, at 486,053 to 487,120 _RS02190 DDA3937_RS02195: DDA3937_RS02195 - FGGY-family carbohydrate kinase, at 487,113 to 488,624 _RS02195 Position (kb) 486 487 488Strain fitness (log2 ratio) -2 -1 0 1 2 3at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.113 kb on + strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strandat 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.114 kb on - strand, within DDA3937_RS02185at 485.117 kb on - strand, within DDA3937_RS02185at 485.266 kb on + strand, within DDA3937_RS02185at 485.392 kb on + strand, within DDA3937_RS02185at 485.392 kb on + strand, within DDA3937_RS02185at 485.392 kb on + strand, within DDA3937_RS02185at 485.392 kb on + strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185at 485.393 kb on - strand, within DDA3937_RS02185at 485.824 kb on - strand, within DDA3937_RS02185at 485.851 kb on + strand, within DDA3937_RS02185at 485.852 kb on - strand, within DDA3937_RS02185at 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.074 kb on + strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.075 kb on - strandat 486.076 kb on + strandat 486.076 kb on + strandat 486.076 kb on + strandat 486.076 kb on + strandat 486.076 kb on + strandat 486.076 kb on + strandat 486.076 kb on + strandat 486.076 kb on + strandat 486.076 kb on + strandat 486.076 kb on + strandat 486.076 kb on + strandat 486.076 kb on + strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.077 kb on - strandat 486.080 kb on + strandat 486.080 kb on + strandat 486.080 kb on + strandat 486.080 kb on + strandat 486.081 kb on - strandat 486.081 kb on - strandat 486.081 kb on - strandat 486.081 kb on - strandat 486.081 kb on - strandat 486.081 kb on - strandat 486.081 kb on - strandat 486.220 kb on + strand, within DDA3937_RS02190at 486.220 kb on + strand, within DDA3937_RS02190at 486.220 kb on + strand, within DDA3937_RS02190at 486.220 kb on + strand, within DDA3937_RS02190at 486.451 kb on + strand, within DDA3937_RS02190at 486.451 kb on + strand, within DDA3937_RS02190at 486.451 kb on + strand, within DDA3937_RS02190at 486.452 kb on - strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.467 kb on + strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strandat 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.468 kb on - strand, within DDA3937_RS02190at 486.512 kb on + strand, within DDA3937_RS02190at 486.586 kb on + strand, within DDA3937_RS02190at 486.586 kb on + strand, within DDA3937_RS02190at 486.586 kb on + strand, within DDA3937_RS02190at 486.586 kb on + strand, within DDA3937_RS02190at 486.586 kb on + strand, within DDA3937_RS02190at 486.587 kb on - strand, within DDA3937_RS02190at 486.587 kb on - strand, within DDA3937_RS02190at 486.591 kb on - strand, within DDA3937_RS02190at 486.591 kb on - strand, within DDA3937_RS02190at 486.636 kb on - strand, within DDA3937_RS02190at 486.665 kb on + strand, within DDA3937_RS02190at 486.665 kb on + strand, within DDA3937_RS02190at 486.665 kb on + strand, within DDA3937_RS02190at 486.666 kb on - strand, within DDA3937_RS02190at 486.666 kb on - strand, within DDA3937_RS02190at 486.666 kb on - strand, within DDA3937_RS02190at 486.667 kb on + strand, within DDA3937_RS02190at 486.667 kb on + strand, within DDA3937_RS02190at 486.667 kb on + strand, within DDA3937_RS02190at 486.667 kb on + strand, within DDA3937_RS02190at 486.667 kb on + strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.668 kb on - strand, within DDA3937_RS02190at 486.671 kb on + strand, within DDA3937_RS02190at 486.671 kb on + strand, within DDA3937_RS02190at 486.672 kb on - strand, within DDA3937_RS02190at 486.989 kb on - strand, within DDA3937_RS02190at 487.118 kb on + strandat 487.118 kb on + strandat 487.119 kb on - strandat 487.119 kb on - strandat 487.408 kb on + strand, within DDA3937_RS02195at 487.409 kb on - strand, within DDA3937_RS02195at 487.450 kb on + strand, within DDA3937_RS02195at 487.450 kb on + strand, within DDA3937_RS02195at 487.595 kb on + strand, within DDA3937_RS02195at 487.595 kb on + strand, within DDA3937_RS02195at 487.682 kb on + strand, within DDA3937_RS02195at 487.683 kb on - strand, within DDA3937_RS02195at 487.899 kb on + strand, within DDA3937_RS02195at 487.899 kb on + strand, within DDA3937_RS02195at 487.900 kb on - strand, within DDA3937_RS02195at 487.900 kb on - strand, within DDA3937_RS02195at 487.900 kb on - strand, within DDA3937_RS02195at 488.002 kb on - strand, within DDA3937_RS02195at 488.053 kb on + strand, within DDA3937_RS02195at 488.054 kb on - strand, within DDA3937_RS02195at 488.054 kb on - strand, within DDA3937_RS02195at 488.054 kb on - strand, within DDA3937_RS02195

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
485,113 + DDA3937_RS02185 0.41 -2.4
485,113 + DDA3937_RS02185 0.41 -0.0
485,113 + DDA3937_RS02185 0.41 +0.2
485,113 + DDA3937_RS02185 0.41 +0.3
485,113 + DDA3937_RS02185 0.41 -0.1
485,113 + DDA3937_RS02185 0.41 -1.6
485,113 + DDA3937_RS02185 0.41 +0.7
485,113 + DDA3937_RS02185 0.41 -0.7
485,114 - DDA3937_RS02185 0.41 -2.2
485,114 - -0.7
485,114 - DDA3937_RS02185 0.41 -0.3
485,114 - DDA3937_RS02185 0.41 -1.5
485,114 - DDA3937_RS02185 0.41 +0.3
485,114 - DDA3937_RS02185 0.41 +0.8
485,114 - DDA3937_RS02185 0.41 -1.4
485,114 - DDA3937_RS02185 0.41 +0.5
485,117 - DDA3937_RS02185 0.41 -0.3
485,266 + DDA3937_RS02185 0.51 +0.4
485,392 + DDA3937_RS02185 0.59 -0.3
485,392 + DDA3937_RS02185 0.59 -0.1
485,392 + DDA3937_RS02185 0.59 +1.9
485,392 + DDA3937_RS02185 0.59 -0.4
485,393 - DDA3937_RS02185 0.59 +0.6
485,393 - DDA3937_RS02185 0.59 +0.3
485,393 - DDA3937_RS02185 0.59 -1.0
485,393 - DDA3937_RS02185 0.59 +0.5
485,393 - DDA3937_RS02185 0.59 -0.6
485,393 - DDA3937_RS02185 0.59 +0.5
485,824 - DDA3937_RS02185 0.86 -0.4
485,851 + DDA3937_RS02185 0.88 +1.1
485,852 - DDA3937_RS02185 0.88 +1.2
486,074 + +0.5
486,074 + -0.3
486,074 + -1.3
486,074 + +0.3
486,074 + +0.1
486,074 + +0.8
486,074 + +0.2
486,074 + -0.7
486,074 + -1.0
486,074 + +0.4
486,074 + -1.3
486,074 + -0.0
486,074 + -0.4
486,074 + -0.1
486,075 - +0.4
486,075 - -0.3
486,075 - +0.4
486,075 - -0.0
486,075 - -0.0
486,075 - +0.9
486,075 - -1.0
486,075 - +1.3
486,075 - +0.4
486,075 - +0.7
486,075 - +1.3
486,075 - -0.1
486,075 - +0.6
486,075 - -0.4
486,075 - -0.4
486,076 + +1.6
486,076 + -0.1
486,076 + +2.0
486,076 + -0.3
486,076 + +0.9
486,076 + -1.6
486,076 + -0.6
486,076 + -1.4
486,076 + -1.2
486,076 + -1.3
486,076 + +2.3
486,076 + +0.2
486,077 - -0.8
486,077 - -1.5
486,077 - -0.0
486,077 - -1.2
486,077 - -1.0
486,077 - +0.2
486,077 - -0.7
486,077 - +0.5
486,077 - -0.0
486,077 - -1.7
486,077 - -0.3
486,077 - +0.1
486,077 - -2.2
486,077 - -0.9
486,080 + -0.3
486,080 + -1.4
486,080 + +0.8
486,080 + +1.0
486,081 - -0.7
486,081 - -1.0
486,081 - -0.0
486,081 - -2.4
486,081 - -0.4
486,081 - -1.4
486,081 - -1.3
486,220 + DDA3937_RS02190 0.16 +3.1
486,220 + DDA3937_RS02190 0.16 -0.7
486,220 + DDA3937_RS02190 0.16 +0.0
486,220 + DDA3937_RS02190 0.16 +0.2
486,451 + DDA3937_RS02190 0.37 -0.7
486,451 + DDA3937_RS02190 0.37 -0.8
486,451 + DDA3937_RS02190 0.37 -0.0
486,452 - DDA3937_RS02190 0.37 -0.1
486,467 + DDA3937_RS02190 0.39 -0.1
486,467 + DDA3937_RS02190 0.39 -0.3
486,467 + DDA3937_RS02190 0.39 -0.9
486,467 + DDA3937_RS02190 0.39 -1.0
486,467 + DDA3937_RS02190 0.39 +1.7
486,467 + DDA3937_RS02190 0.39 +1.1
486,467 + DDA3937_RS02190 0.39 -0.2
486,467 + DDA3937_RS02190 0.39 -2.0
486,467 + DDA3937_RS02190 0.39 -1.1
486,467 + DDA3937_RS02190 0.39 +0.3
486,468 - DDA3937_RS02190 0.39 +0.5
486,468 - DDA3937_RS02190 0.39 +0.3
486,468 - -0.3
486,468 - DDA3937_RS02190 0.39 -1.6
486,468 - DDA3937_RS02190 0.39 +0.6
486,468 - DDA3937_RS02190 0.39 -0.3
486,468 - DDA3937_RS02190 0.39 +0.7
486,468 - DDA3937_RS02190 0.39 +2.2
486,468 - DDA3937_RS02190 0.39 +0.2
486,512 + DDA3937_RS02190 0.43 -0.7
486,586 + DDA3937_RS02190 0.50 -0.6
486,586 + DDA3937_RS02190 0.50 +0.3
486,586 + DDA3937_RS02190 0.50 -0.7
486,586 + DDA3937_RS02190 0.50 -0.1
486,586 + DDA3937_RS02190 0.50 -1.4
486,587 - DDA3937_RS02190 0.50 -0.1
486,587 - DDA3937_RS02190 0.50 +0.7
486,591 - DDA3937_RS02190 0.50 -0.1
486,591 - DDA3937_RS02190 0.50 -0.7
486,636 - DDA3937_RS02190 0.55 -0.1
486,665 + DDA3937_RS02190 0.57 -0.7
486,665 + DDA3937_RS02190 0.57 -0.5
486,665 + DDA3937_RS02190 0.57 +2.9
486,666 - DDA3937_RS02190 0.57 +1.8
486,666 - DDA3937_RS02190 0.57 +0.1
486,666 - DDA3937_RS02190 0.57 +1.4
486,667 + DDA3937_RS02190 0.57 -1.5
486,667 + DDA3937_RS02190 0.57 +0.4
486,667 + DDA3937_RS02190 0.57 +0.6
486,667 + DDA3937_RS02190 0.57 +0.7
486,667 + DDA3937_RS02190 0.57 +0.3
486,668 - DDA3937_RS02190 0.58 +0.5
486,668 - DDA3937_RS02190 0.58 -0.8
486,668 - DDA3937_RS02190 0.58 -1.6
486,668 - DDA3937_RS02190 0.58 -2.3
486,668 - DDA3937_RS02190 0.58 -0.2
486,668 - DDA3937_RS02190 0.58 -1.8
486,668 - DDA3937_RS02190 0.58 -0.8
486,668 - DDA3937_RS02190 0.58 -0.0
486,668 - DDA3937_RS02190 0.58 -0.4
486,668 - DDA3937_RS02190 0.58 +0.5
486,671 + DDA3937_RS02190 0.58 -2.6
486,671 + DDA3937_RS02190 0.58 -0.9
486,672 - DDA3937_RS02190 0.58 +3.3
486,989 - DDA3937_RS02190 0.88 +0.4
487,118 + -0.2
487,118 + -1.0
487,119 - -1.3
487,119 - +1.3
487,408 + DDA3937_RS02195 0.20 -1.0
487,409 - DDA3937_RS02195 0.20 +0.3
487,450 + DDA3937_RS02195 0.22 +0.6
487,450 + DDA3937_RS02195 0.22 -1.0
487,595 + DDA3937_RS02195 0.32 +0.3
487,595 + DDA3937_RS02195 0.32 -1.0
487,682 + DDA3937_RS02195 0.38 +0.1
487,683 - DDA3937_RS02195 0.38 -0.8
487,899 + DDA3937_RS02195 0.52 -1.5
487,899 + DDA3937_RS02195 0.52 +2.6
487,900 - DDA3937_RS02195 0.52 -1.5
487,900 - DDA3937_RS02195 0.52 -0.3
487,900 - DDA3937_RS02195 0.52 -0.7
488,002 - DDA3937_RS02195 0.59 -0.6
488,053 + DDA3937_RS02195 0.62 +0.9
488,054 - DDA3937_RS02195 0.62 +0.6
488,054 - DDA3937_RS02195 0.62 -0.9
488,054 - DDA3937_RS02195 0.62 +0.1

Or see this region's nucleotide sequence