Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS23395 and DDA3937_RS01915 are separated by 210 nucleotides DDA3937_RS01915 and DDA3937_RS01920 are separated by 112 nucleotides DDA3937_RS01920 and DDA3937_RS01925 are separated by 16 nucleotides
DDA3937_RS23395: DDA3937_RS23395 - hypothetical protein, at 430,044 to 430,799
_RS23395
DDA3937_RS01915: DDA3937_RS01915 - 2-iminobutanoate/2-iminopropanoate deaminase, at 431,010 to 431,396
_RS01915
DDA3937_RS01920: DDA3937_RS01920 - aspartate carbamoyltransferase regulatory subunit, at 431,509 to 431,973
_RS01920
DDA3937_RS01925: DDA3937_RS01925 - aspartate carbamoyltransferase, at 431,990 to 432,925
_RS01925
Position (kb) 431
432 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 430.023 kb on + strand at 430.024 kb on - strand at 430.024 kb on - strand at 430.024 kb on - strand at 430.031 kb on + strand at 430.031 kb on + strand at 430.032 kb on - strand at 430.147 kb on - strand, within DDA3937_RS23395 at 430.219 kb on + strand, within DDA3937_RS23395 at 430.302 kb on + strand, within DDA3937_RS23395 at 430.302 kb on + strand, within DDA3937_RS23395 at 430.320 kb on + strand, within DDA3937_RS23395 at 430.327 kb on + strand, within DDA3937_RS23395 at 430.370 kb on - strand, within DDA3937_RS23395 at 430.370 kb on - strand, within DDA3937_RS23395 at 430.377 kb on + strand, within DDA3937_RS23395 at 430.378 kb on - strand, within DDA3937_RS23395 at 430.445 kb on - strand, within DDA3937_RS23395 at 430.520 kb on - strand, within DDA3937_RS23395 at 430.534 kb on - strand, within DDA3937_RS23395 at 430.573 kb on - strand, within DDA3937_RS23395 at 430.577 kb on + strand, within DDA3937_RS23395 at 430.577 kb on + strand, within DDA3937_RS23395 at 430.612 kb on + strand, within DDA3937_RS23395 at 430.613 kb on - strand, within DDA3937_RS23395 at 430.613 kb on - strand, within DDA3937_RS23395 at 430.616 kb on - strand, within DDA3937_RS23395 at 430.616 kb on - strand, within DDA3937_RS23395 at 430.616 kb on - strand, within DDA3937_RS23395 at 430.625 kb on + strand, within DDA3937_RS23395 at 430.626 kb on - strand, within DDA3937_RS23395 at 430.639 kb on - strand, within DDA3937_RS23395 at 430.708 kb on + strand, within DDA3937_RS23395 at 430.708 kb on + strand, within DDA3937_RS23395 at 430.710 kb on + strand, within DDA3937_RS23395 at 430.711 kb on - strand, within DDA3937_RS23395 at 430.716 kb on - strand, within DDA3937_RS23395 at 430.719 kb on - strand, within DDA3937_RS23395 at 430.723 kb on - strand, within DDA3937_RS23395 at 430.723 kb on - strand, within DDA3937_RS23395 at 430.730 kb on + strand at 430.731 kb on - strand at 430.741 kb on + strand at 430.742 kb on - strand at 430.774 kb on + strand at 430.774 kb on + strand at 430.798 kb on - strand at 430.801 kb on + strand at 430.801 kb on + strand at 430.801 kb on + strand at 430.802 kb on - strand at 430.802 kb on - strand at 430.802 kb on - strand at 430.805 kb on + strand at 430.805 kb on + strand at 430.880 kb on - strand at 430.900 kb on + strand at 430.900 kb on + strand at 430.901 kb on - strand at 430.905 kb on + strand at 430.937 kb on - strand at 430.937 kb on - strand at 430.954 kb on + strand at 431.125 kb on + strand, within DDA3937_RS01915 at 431.126 kb on - strand, within DDA3937_RS01915 at 431.181 kb on - strand, within DDA3937_RS01915 at 431.347 kb on + strand, within DDA3937_RS01915 at 431.378 kb on + strand at 431.396 kb on + strand at 431.397 kb on - strand at 431.397 kb on - strand at 431.397 kb on - strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.410 kb on + strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.411 kb on - strand at 431.439 kb on - strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.513 kb on + strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.514 kb on - strand at 431.555 kb on + strand at 431.555 kb on + strand at 431.556 kb on - strand, within DDA3937_RS01920 at 431.556 kb on - strand, within DDA3937_RS01920 at 431.631 kb on + strand, within DDA3937_RS01920 at 431.632 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.709 kb on - strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.744 kb on + strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.745 kb on - strand, within DDA3937_RS01920 at 431.785 kb on - strand, within DDA3937_RS01920 at 431.808 kb on + strand, within DDA3937_RS01920 at 431.887 kb on + strand, within DDA3937_RS01920 at 431.887 kb on + strand, within DDA3937_RS01920 at 431.913 kb on + strand, within DDA3937_RS01920 at 431.914 kb on - strand, within DDA3937_RS01920 at 431.947 kb on + strand at 431.947 kb on + strand at 431.947 kb on + strand at 431.948 kb on - strand at 431.948 kb on - strand at 431.953 kb on + strand at 431.959 kb on - strand at 431.959 kb on - strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.980 kb on + strand at 431.981 kb on - strand at 431.981 kb on - strand at 431.981 kb on - strand at 431.981 kb on - strand at 431.981 kb on - strand at 432.042 kb on + strand at 432.043 kb on - strand at 432.043 kb on - strand at 432.046 kb on + strand at 432.047 kb on - strand at 432.069 kb on + strand at 432.070 kb on - strand at 432.070 kb on - strand at 432.073 kb on - strand at 432.073 kb on - strand at 432.196 kb on + strand, within DDA3937_RS01925 at 432.197 kb on - strand, within DDA3937_RS01925 at 432.197 kb on - strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.246 kb on + strand, within DDA3937_RS01925 at 432.247 kb on - strand, within DDA3937_RS01925 at 432.247 kb on - strand, within DDA3937_RS01925 at 432.253 kb on + strand, within DDA3937_RS01925 at 432.253 kb on + strand, within DDA3937_RS01925 at 432.286 kb on + strand, within DDA3937_RS01925 at 432.286 kb on + strand, within DDA3937_RS01925 at 432.287 kb on - strand, within DDA3937_RS01925 at 432.297 kb on + strand, within DDA3937_RS01925 at 432.305 kb on - strand, within DDA3937_RS01925 at 432.333 kb on + strand, within DDA3937_RS01925 at 432.333 kb on + strand, within DDA3937_RS01925 at 432.333 kb on + strand, within DDA3937_RS01925 at 432.334 kb on - strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.369 kb on + strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925 at 432.370 kb on - strand, within DDA3937_RS01925
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 430,023 + +1.3 430,024 - -0.3 430,024 - -0.0 430,024 - -0.3 430,031 + +0.6 430,031 + +0.2 430,032 - -1.0 430,147 - DDA3937_RS23395 0.14 -1.6 430,219 + DDA3937_RS23395 0.23 -0.6 430,302 + DDA3937_RS23395 0.34 -0.3 430,302 + DDA3937_RS23395 0.34 +0.1 430,320 + DDA3937_RS23395 0.37 -0.5 430,327 + DDA3937_RS23395 0.37 -0.8 430,370 - DDA3937_RS23395 0.43 -1.0 430,370 - DDA3937_RS23395 0.43 -0.2 430,377 + DDA3937_RS23395 0.44 -0.6 430,378 - DDA3937_RS23395 0.44 -0.0 430,445 - DDA3937_RS23395 0.53 -2.2 430,520 - DDA3937_RS23395 0.63 +0.3 430,534 - DDA3937_RS23395 0.65 -0.3 430,573 - DDA3937_RS23395 0.70 -0.3 430,577 + DDA3937_RS23395 0.71 -1.3 430,577 + DDA3937_RS23395 0.71 +4.7 430,612 + DDA3937_RS23395 0.75 +0.0 430,613 - DDA3937_RS23395 0.75 -1.3 430,613 - DDA3937_RS23395 0.75 -0.1 430,616 - DDA3937_RS23395 0.76 +0.1 430,616 - DDA3937_RS23395 0.76 -0.7 430,616 - DDA3937_RS23395 0.76 +0.3 430,625 + DDA3937_RS23395 0.77 -0.7 430,626 - DDA3937_RS23395 0.77 -0.3 430,639 - DDA3937_RS23395 0.79 -1.3 430,708 + DDA3937_RS23395 0.88 -1.5 430,708 + DDA3937_RS23395 0.88 +0.3 430,710 + DDA3937_RS23395 0.88 +0.7 430,711 - DDA3937_RS23395 0.88 -0.3 430,716 - DDA3937_RS23395 0.89 -0.2 430,719 - DDA3937_RS23395 0.89 -1.4 430,723 - DDA3937_RS23395 0.90 -0.2 430,723 - DDA3937_RS23395 0.90 +0.2 430,730 + -1.7 430,731 - -0.2 430,741 + +0.3 430,742 - -0.1 430,774 + +2.3 430,774 + +1.6 430,798 - -0.1 430,801 + +0.9 430,801 + +0.4 430,801 + +0.4 430,802 - -0.6 430,802 - -1.3 430,802 - -0.0 430,805 + -3.1 430,805 + +1.5 430,880 - -0.5 430,900 + -0.1 430,900 + -2.1 430,901 - +0.6 430,905 + -1.5 430,937 - +0.6 430,937 - -1.3 430,954 + +0.2 431,125 + DDA3937_RS01915 0.30 -1.7 431,126 - DDA3937_RS01915 0.30 -0.7 431,181 - DDA3937_RS01915 0.44 -0.7 431,347 + DDA3937_RS01915 0.87 -0.4 431,378 + +0.5 431,396 + +0.9 431,397 - -1.7 431,397 - +0.6 431,397 - +0.0 431,410 + -2.0 431,410 + -2.4 431,410 + +0.2 431,410 + -0.3 431,410 + -0.7 431,411 - -0.1 431,411 - +0.4 431,411 - +0.9 431,411 - -0.0 431,411 - -1.2 431,439 - -1.4 431,513 + +2.6 431,513 + -0.9 431,513 + -0.0 431,513 + -1.4 431,513 + -1.0 431,513 + -1.5 431,514 - -0.5 431,514 - -0.8 431,514 - -0.1 431,514 - +0.3 431,514 - +0.7 431,514 - +0.1 431,555 + +0.2 431,555 + +1.8 431,556 - DDA3937_RS01920 0.10 -0.7 431,556 - DDA3937_RS01920 0.10 +0.4 431,631 + DDA3937_RS01920 0.26 -0.2 431,632 - DDA3937_RS01920 0.26 +1.2 431,709 - DDA3937_RS01920 0.43 -1.8 431,709 - DDA3937_RS01920 0.43 +0.3 431,709 - DDA3937_RS01920 0.43 +0.7 431,709 - DDA3937_RS01920 0.43 -0.7 431,744 + DDA3937_RS01920 0.51 +0.5 431,744 + DDA3937_RS01920 0.51 +1.8 431,744 + DDA3937_RS01920 0.51 -0.7 431,744 + DDA3937_RS01920 0.51 -0.4 431,745 - DDA3937_RS01920 0.51 -0.0 431,745 - DDA3937_RS01920 0.51 +0.1 431,745 - DDA3937_RS01920 0.51 -1.6 431,785 - DDA3937_RS01920 0.59 -0.1 431,808 + DDA3937_RS01920 0.64 +0.0 431,887 + DDA3937_RS01920 0.81 -0.5 431,887 + DDA3937_RS01920 0.81 -0.2 431,913 + DDA3937_RS01920 0.87 +4.4 431,914 - DDA3937_RS01920 0.87 -0.1 431,947 + -0.0 431,947 + -1.0 431,947 + -0.3 431,948 - -1.7 431,948 - -0.6 431,953 + -0.9 431,959 - +0.5 431,959 - -1.3 431,980 + -0.4 431,980 + +1.5 431,980 + -0.8 431,980 + +0.4 431,980 + +0.2 431,980 + -2.3 431,981 - -0.4 431,981 - +0.3 431,981 - -1.4 431,981 - -1.1 431,981 - +1.0 432,042 + -2.0 432,043 - +0.2 432,043 - -2.3 432,046 + -0.3 432,047 - -3.1 432,069 + -0.8 432,070 - -3.0 432,070 - -2.2 432,073 - -2.0 432,073 - -1.7 432,196 + DDA3937_RS01925 0.22 -2.8 432,197 - DDA3937_RS01925 0.22 -1.4 432,197 - DDA3937_RS01925 0.22 -2.0 432,246 + DDA3937_RS01925 0.27 -3.8 432,246 + DDA3937_RS01925 0.27 -2.5 432,246 + DDA3937_RS01925 0.27 -0.4 432,246 + DDA3937_RS01925 0.27 -1.8 432,246 + DDA3937_RS01925 0.27 -3.1 432,247 - DDA3937_RS01925 0.27 -1.0 432,247 - DDA3937_RS01925 0.27 -1.5 432,253 + DDA3937_RS01925 0.28 -1.5 432,253 + DDA3937_RS01925 0.28 -1.2 432,286 + DDA3937_RS01925 0.32 -0.3 432,286 + DDA3937_RS01925 0.32 -4.4 432,287 - DDA3937_RS01925 0.32 -3.4 432,297 + DDA3937_RS01925 0.33 -1.8 432,305 - DDA3937_RS01925 0.34 -2.2 432,333 + DDA3937_RS01925 0.37 -3.8 432,333 + DDA3937_RS01925 0.37 -0.5 432,333 + DDA3937_RS01925 0.37 -2.1 432,334 - DDA3937_RS01925 0.37 -1.6 432,369 + DDA3937_RS01925 0.40 -2.0 432,369 + DDA3937_RS01925 0.40 -3.7 432,369 + DDA3937_RS01925 0.40 -2.8 432,369 + DDA3937_RS01925 0.40 -1.6 432,370 - DDA3937_RS01925 0.41 -4.8 432,370 - DDA3937_RS01925 0.41 -2.5 432,370 - DDA3937_RS01925 0.41 -2.1 432,370 - DDA3937_RS01925 0.41 -4.5
Or see this region's nucleotide sequence