Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00790 and DDA3937_RS00795 are separated by 358 nucleotides
DDA3937_RS00790: DDA3937_RS00790 - hypothetical protein, at 185,220 to 185,708
_RS00790
DDA3937_RS00795: DDA3937_RS00795 - phage tail protein, at 186,067 to 186,537
_RS00795
Position (kb) 186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 185.070 kb on + strand at 185.098 kb on - strand at 185.154 kb on + strand at 185.154 kb on + strand at 185.154 kb on + strand at 185.155 kb on - strand at 185.155 kb on - strand at 185.155 kb on - strand at 185.156 kb on + strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.157 kb on - strand at 185.187 kb on - strand at 185.222 kb on - strand at 185.334 kb on - strand, within DDA3937_RS00790 at 185.417 kb on + strand, within DDA3937_RS00790 at 185.417 kb on + strand, within DDA3937_RS00790 at 185.417 kb on + strand, within DDA3937_RS00790 at 185.418 kb on - strand, within DDA3937_RS00790 at 185.418 kb on - strand, within DDA3937_RS00790 at 185.419 kb on + strand, within DDA3937_RS00790 at 185.419 kb on + strand, within DDA3937_RS00790 at 185.420 kb on - strand, within DDA3937_RS00790 at 185.420 kb on - strand, within DDA3937_RS00790 at 185.420 kb on - strand, within DDA3937_RS00790 at 185.431 kb on + strand, within DDA3937_RS00790 at 185.431 kb on + strand, within DDA3937_RS00790 at 185.432 kb on - strand, within DDA3937_RS00790 at 185.465 kb on - strand, within DDA3937_RS00790 at 185.557 kb on + strand, within DDA3937_RS00790 at 185.564 kb on + strand, within DDA3937_RS00790 at 185.665 kb on - strand at 185.753 kb on + strand at 185.756 kb on + strand at 185.756 kb on + strand at 185.757 kb on - strand at 185.862 kb on + strand at 185.863 kb on - strand at 185.863 kb on - strand at 185.866 kb on + strand at 185.895 kb on + strand at 185.993 kb on - strand at 186.011 kb on - strand at 186.011 kb on - strand at 186.066 kb on + strand at 186.066 kb on + strand at 186.079 kb on + strand at 186.080 kb on - strand at 186.081 kb on + strand at 186.081 kb on + strand at 186.081 kb on + strand at 186.201 kb on + strand, within DDA3937_RS00795 at 186.202 kb on - strand, within DDA3937_RS00795 at 186.347 kb on - strand, within DDA3937_RS00795 at 186.394 kb on + strand, within DDA3937_RS00795 at 186.395 kb on - strand, within DDA3937_RS00795 at 186.397 kb on - strand, within DDA3937_RS00795 at 186.437 kb on + strand, within DDA3937_RS00795 at 186.517 kb on + strand at 186.518 kb on - strand at 186.518 kb on - strand at 186.526 kb on - strand at 186.582 kb on + strand at 186.583 kb on - strand at 186.583 kb on - strand at 186.620 kb on + strand at 186.651 kb on + strand at 186.681 kb on + strand at 186.681 kb on + strand at 186.695 kb on + strand at 186.695 kb on + strand at 186.695 kb on + strand at 186.695 kb on + strand at 186.696 kb on - strand at 186.835 kb on + strand at 186.835 kb on + strand at 186.836 kb on - strand at 186.836 kb on - strand at 186.904 kb on + strand at 186.905 kb on - strand at 186.933 kb on + strand at 186.990 kb on - strand at 187.044 kb on - strand at 187.160 kb on + strand at 187.204 kb on + strand at 187.234 kb on - strand at 187.238 kb on - strand at 187.339 kb on - strand at 187.340 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 185,070 + -0.8 185,098 - +0.4 185,154 + -0.1 185,154 + -0.9 185,154 + -0.4 185,155 - -1.0 185,155 - +0.4 185,155 - -0.4 185,156 + +0.4 185,157 - -1.9 185,157 - +0.4 185,157 - +1.0 185,157 - -0.2 185,157 - -1.2 185,187 - -1.1 185,222 - +0.9 185,334 - DDA3937_RS00790 0.23 +0.4 185,417 + DDA3937_RS00790 0.40 -1.8 185,417 + DDA3937_RS00790 0.40 -1.6 185,417 + DDA3937_RS00790 0.40 +1.5 185,418 - DDA3937_RS00790 0.40 -0.8 185,418 - DDA3937_RS00790 0.40 -0.2 185,419 + DDA3937_RS00790 0.41 -0.5 185,419 + DDA3937_RS00790 0.41 +1.8 185,420 - DDA3937_RS00790 0.41 +1.2 185,420 - DDA3937_RS00790 0.41 -0.6 185,420 - DDA3937_RS00790 0.41 +0.1 185,431 + DDA3937_RS00790 0.43 -0.4 185,431 + DDA3937_RS00790 0.43 +2.4 185,432 - DDA3937_RS00790 0.43 -0.2 185,465 - DDA3937_RS00790 0.50 -0.3 185,557 + DDA3937_RS00790 0.69 -0.4 185,564 + DDA3937_RS00790 0.70 +0.1 185,665 - +0.5 185,753 + +0.4 185,756 + -0.2 185,756 + -1.6 185,757 - -0.7 185,862 + +0.4 185,863 - -0.1 185,863 - +0.3 185,866 + +1.4 185,895 + -0.1 185,993 - -0.8 186,011 - +0.4 186,011 - -1.3 186,066 + +1.0 186,066 + -0.2 186,079 + -1.1 186,080 - +0.1 186,081 + -1.2 186,081 + +0.1 186,081 + +0.2 186,201 + DDA3937_RS00795 0.28 -1.0 186,202 - DDA3937_RS00795 0.29 -0.5 186,347 - DDA3937_RS00795 0.59 -0.4 186,394 + DDA3937_RS00795 0.69 -1.2 186,395 - DDA3937_RS00795 0.70 -2.9 186,397 - DDA3937_RS00795 0.70 -0.1 186,437 + DDA3937_RS00795 0.79 +1.4 186,517 + -0.7 186,518 - +0.5 186,518 - -1.6 186,526 - +0.9 186,582 + +2.5 186,583 - +0.3 186,583 - +1.1 186,620 + -0.4 186,651 + -0.2 186,681 + +0.2 186,681 + -2.5 186,695 + -0.0 186,695 + -0.3 186,695 + +0.1 186,695 + +0.1 186,696 - -0.8 186,835 + -2.4 186,835 + +0.4 186,836 - -0.2 186,836 - +0.8 186,904 + -1.4 186,905 - -0.5 186,933 + -0.6 186,990 - +1.4 187,044 - +0.8 187,160 + +0.6 187,204 + -0.2 187,234 - -0.3 187,238 - -1.8 187,339 - -1.8 187,340 + -0.6
Or see this region's nucleotide sequence