Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS00450

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS00445 and DDA3937_RS00450 are separated by 12 nucleotidesDDA3937_RS00450 and DDA3937_RS00455 are separated by 105 nucleotides DDA3937_RS00445: DDA3937_RS00445 - two-component system sensor histidine kinase DcuS, at 104,003 to 105,616 _RS00445 DDA3937_RS00450: DDA3937_RS00450 - two-component system response regulator DcuR, at 105,629 to 106,351 _RS00450 DDA3937_RS00455: DDA3937_RS00455 - 2-hydroxycarboxylate transporter family protein, at 106,457 to 107,800 _RS00455 Position (kb) 105 106 107Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 104.996 kb on + strand, within DDA3937_RS00445at 105.000 kb on - strand, within DDA3937_RS00445at 105.077 kb on + strand, within DDA3937_RS00445at 105.078 kb on - strand, within DDA3937_RS00445at 105.078 kb on - strand, within DDA3937_RS00445at 105.098 kb on + strand, within DDA3937_RS00445at 105.098 kb on + strand, within DDA3937_RS00445at 105.098 kb on + strand, within DDA3937_RS00445at 105.098 kb on + strand, within DDA3937_RS00445at 105.099 kb on - strand, within DDA3937_RS00445at 105.101 kb on - strand, within DDA3937_RS00445at 105.118 kb on + strand, within DDA3937_RS00445at 105.119 kb on - strand, within DDA3937_RS00445at 105.119 kb on - strand, within DDA3937_RS00445at 105.122 kb on + strand, within DDA3937_RS00445at 105.123 kb on - strand, within DDA3937_RS00445at 105.123 kb on - strand, within DDA3937_RS00445at 105.156 kb on + strand, within DDA3937_RS00445at 105.156 kb on + strand, within DDA3937_RS00445at 105.156 kb on + strand, within DDA3937_RS00445at 105.157 kb on - strand, within DDA3937_RS00445at 105.157 kb on - strand, within DDA3937_RS00445at 105.157 kb on - strand, within DDA3937_RS00445at 105.387 kb on + strand, within DDA3937_RS00445at 105.387 kb on + strand, within DDA3937_RS00445at 105.388 kb on - strand, within DDA3937_RS00445at 105.388 kb on - strand, within DDA3937_RS00445at 105.388 kb on - strand, within DDA3937_RS00445at 105.388 kb on - strand, within DDA3937_RS00445at 105.446 kb on + strand, within DDA3937_RS00445at 105.447 kb on - strand, within DDA3937_RS00445at 105.494 kb on + strandat 105.494 kb on + strandat 105.495 kb on - strandat 105.560 kb on + strandat 105.580 kb on + strandat 105.580 kb on + strandat 105.580 kb on + strandat 105.581 kb on - strandat 105.581 kb on - strandat 105.614 kb on + strandat 105.615 kb on - strandat 105.633 kb on + strandat 105.634 kb on - strandat 105.634 kb on - strandat 105.634 kb on - strandat 105.639 kb on + strandat 105.679 kb on + strandat 105.679 kb on + strandat 105.680 kb on - strandat 105.680 kb on - strandat 105.680 kb on - strandat 105.680 kb on - strandat 105.680 kb on - strandat 105.680 kb on - strandat 105.686 kb on + strandat 105.687 kb on - strandat 105.717 kb on - strand, within DDA3937_RS00450at 105.796 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.800 kb on + strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.801 kb on - strand, within DDA3937_RS00450at 105.867 kb on + strand, within DDA3937_RS00450at 105.867 kb on + strand, within DDA3937_RS00450at 105.867 kb on + strand, within DDA3937_RS00450at 105.867 kb on + strand, within DDA3937_RS00450at 105.867 kb on + strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.868 kb on - strand, within DDA3937_RS00450at 105.871 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.896 kb on + strand, within DDA3937_RS00450at 105.897 kb on - strand, within DDA3937_RS00450at 105.897 kb on - strand, within DDA3937_RS00450at 105.897 kb on - strand, within DDA3937_RS00450at 105.935 kb on + strand, within DDA3937_RS00450at 105.936 kb on - strand, within DDA3937_RS00450at 106.060 kb on + strand, within DDA3937_RS00450at 106.080 kb on + strand, within DDA3937_RS00450at 106.081 kb on - strand, within DDA3937_RS00450at 106.224 kb on - strand, within DDA3937_RS00450at 106.232 kb on + strand, within DDA3937_RS00450at 106.232 kb on + strand, within DDA3937_RS00450at 106.233 kb on - strand, within DDA3937_RS00450at 106.259 kb on - strand, within DDA3937_RS00450at 106.295 kb on + strandat 106.295 kb on + strandat 106.349 kb on + strandat 106.350 kb on - strandat 106.400 kb on + strandat 106.400 kb on + strandat 106.439 kb on + strandat 106.440 kb on - strandat 106.458 kb on + strandat 106.458 kb on + strandat 106.458 kb on + strandat 106.459 kb on - strandat 106.635 kb on + strand, within DDA3937_RS00455at 106.636 kb on - strand, within DDA3937_RS00455at 106.636 kb on - strand, within DDA3937_RS00455at 106.647 kb on + strand, within DDA3937_RS00455at 106.648 kb on - strand, within DDA3937_RS00455at 106.648 kb on - strand, within DDA3937_RS00455at 106.710 kb on + strand, within DDA3937_RS00455at 106.724 kb on + strand, within DDA3937_RS00455at 106.752 kb on + strand, within DDA3937_RS00455at 106.752 kb on + strand, within DDA3937_RS00455at 106.752 kb on + strand, within DDA3937_RS00455at 106.752 kb on + strand, within DDA3937_RS00455at 106.752 kb on + strand, within DDA3937_RS00455at 106.753 kb on - strand, within DDA3937_RS00455at 106.753 kb on - strand, within DDA3937_RS00455at 106.753 kb on - strand, within DDA3937_RS00455at 106.809 kb on + strand, within DDA3937_RS00455at 106.810 kb on - strand, within DDA3937_RS00455at 106.810 kb on - strand, within DDA3937_RS00455at 106.904 kb on - strand, within DDA3937_RS00455at 107.144 kb on + strand, within DDA3937_RS00455at 107.157 kb on + strand, within DDA3937_RS00455at 107.158 kb on - strand, within DDA3937_RS00455at 107.158 kb on - strand, within DDA3937_RS00455at 107.158 kb on - strand, within DDA3937_RS00455at 107.158 kb on - strand, within DDA3937_RS00455at 107.190 kb on + strand, within DDA3937_RS00455at 107.190 kb on + strand, within DDA3937_RS00455at 107.268 kb on + strand, within DDA3937_RS00455at 107.268 kb on + strand, within DDA3937_RS00455at 107.268 kb on + strand, within DDA3937_RS00455at 107.268 kb on + strand, within DDA3937_RS00455at 107.268 kb on + strand, within DDA3937_RS00455at 107.269 kb on - strandat 107.269 kb on - strand, within DDA3937_RS00455at 107.269 kb on - strand, within DDA3937_RS00455at 107.277 kb on + strand, within DDA3937_RS00455at 107.277 kb on + strand, within DDA3937_RS00455at 107.278 kb on - strand, within DDA3937_RS00455at 107.331 kb on - strand, within DDA3937_RS00455

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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104,996 + DDA3937_RS00445 0.62 +0.1
105,000 - DDA3937_RS00445 0.62 +0.4
105,077 + DDA3937_RS00445 0.67 -0.3
105,078 - DDA3937_RS00445 0.67 -0.6
105,078 - DDA3937_RS00445 0.67 -0.1
105,098 + DDA3937_RS00445 0.68 +0.8
105,098 + DDA3937_RS00445 0.68 -3.3
105,098 + DDA3937_RS00445 0.68 -2.7
105,098 + DDA3937_RS00445 0.68 -0.3
105,099 - DDA3937_RS00445 0.68 -0.1
105,101 - DDA3937_RS00445 0.68 +0.4
105,118 + DDA3937_RS00445 0.69 +0.7
105,119 - DDA3937_RS00445 0.69 -0.2
105,119 - DDA3937_RS00445 0.69 -0.1
105,122 + DDA3937_RS00445 0.69 -0.2
105,123 - DDA3937_RS00445 0.69 -1.3
105,123 - DDA3937_RS00445 0.69 -0.8
105,156 + DDA3937_RS00445 0.71 +0.4
105,156 + DDA3937_RS00445 0.71 -2.2
105,156 + DDA3937_RS00445 0.71 +0.5
105,157 - DDA3937_RS00445 0.71 -1.6
105,157 - DDA3937_RS00445 0.71 +0.5
105,157 - DDA3937_RS00445 0.71 -0.3
105,387 + DDA3937_RS00445 0.86 +0.2
105,387 + DDA3937_RS00445 0.86 -0.5
105,388 - DDA3937_RS00445 0.86 -0.8
105,388 - DDA3937_RS00445 0.86 -0.5
105,388 - DDA3937_RS00445 0.86 -0.6
105,388 - DDA3937_RS00445 0.86 +0.4
105,446 + DDA3937_RS00445 0.89 -0.6
105,447 - DDA3937_RS00445 0.89 -1.1
105,494 + +0.3
105,494 + -1.2
105,495 - -0.1
105,560 + +0.1
105,580 + +0.1
105,580 + +1.1
105,580 + -1.5
105,581 - +0.5
105,581 - +0.3
105,614 + -2.1
105,615 - -0.8
105,633 + -1.5
105,634 - +0.5
105,634 - +2.0
105,634 - +1.1
105,639 + -1.5
105,679 + +0.2
105,679 + -1.1
105,680 - -2.3
105,680 - -0.1
105,680 - +0.8
105,680 - +0.5
105,680 - -0.2
105,680 - -0.9
105,686 + -0.4
105,687 - -2.4
105,717 - DDA3937_RS00450 0.12 -1.2
105,796 + DDA3937_RS00450 0.23 +0.8
105,800 + DDA3937_RS00450 0.24 +0.2
105,800 + DDA3937_RS00450 0.24 -0.9
105,800 + DDA3937_RS00450 0.24 +0.1
105,800 + DDA3937_RS00450 0.24 +0.2
105,800 + DDA3937_RS00450 0.24 -1.4
105,800 + DDA3937_RS00450 0.24 +0.3
105,800 + DDA3937_RS00450 0.24 -0.5
105,800 + DDA3937_RS00450 0.24 -0.6
105,800 + DDA3937_RS00450 0.24 -0.7
105,800 + DDA3937_RS00450 0.24 -1.1
105,800 + DDA3937_RS00450 0.24 -2.7
105,800 + DDA3937_RS00450 0.24 -0.5
105,800 + DDA3937_RS00450 0.24 -1.9
105,801 - DDA3937_RS00450 0.24 -1.0
105,801 - DDA3937_RS00450 0.24 -1.1
105,801 - DDA3937_RS00450 0.24 -1.6
105,801 - DDA3937_RS00450 0.24 +3.4
105,801 - DDA3937_RS00450 0.24 -0.7
105,801 - DDA3937_RS00450 0.24 -0.2
105,801 - DDA3937_RS00450 0.24 +0.8
105,801 - DDA3937_RS00450 0.24 -0.4
105,867 + DDA3937_RS00450 0.33 -0.5
105,867 + DDA3937_RS00450 0.33 +0.4
105,867 + DDA3937_RS00450 0.33 -0.7
105,867 + DDA3937_RS00450 0.33 -0.2
105,867 + DDA3937_RS00450 0.33 -1.2
105,868 - DDA3937_RS00450 0.33 -1.7
105,868 - DDA3937_RS00450 0.33 -1.0
105,868 - DDA3937_RS00450 0.33 +0.2
105,868 - DDA3937_RS00450 0.33 +1.4
105,868 - DDA3937_RS00450 0.33 +0.0
105,868 - DDA3937_RS00450 0.33 +0.5
105,868 - DDA3937_RS00450 0.33 -0.6
105,871 + DDA3937_RS00450 0.33 -0.5
105,896 + DDA3937_RS00450 0.37 -1.7
105,896 + DDA3937_RS00450 0.37 -0.2
105,896 + DDA3937_RS00450 0.37 +0.2
105,896 + DDA3937_RS00450 0.37 -1.4
105,896 + DDA3937_RS00450 0.37 +0.1
105,896 + DDA3937_RS00450 0.37 -2.9
105,896 + DDA3937_RS00450 0.37 -1.8
105,896 + DDA3937_RS00450 0.37 -0.4
105,896 + DDA3937_RS00450 0.37 -0.2
105,896 + DDA3937_RS00450 0.37 -1.0
105,896 + DDA3937_RS00450 0.37 -1.6
105,896 + DDA3937_RS00450 0.37 -0.6
105,897 - DDA3937_RS00450 0.37 -0.4
105,897 - DDA3937_RS00450 0.37 -0.3
105,897 - DDA3937_RS00450 0.37 -1.9
105,935 + DDA3937_RS00450 0.42 -0.1
105,936 - DDA3937_RS00450 0.42 +0.1
106,060 + DDA3937_RS00450 0.60 -0.9
106,080 + DDA3937_RS00450 0.62 +0.2
106,081 - DDA3937_RS00450 0.63 -1.0
106,224 - DDA3937_RS00450 0.82 -0.5
106,232 + DDA3937_RS00450 0.83 -0.5
106,232 + DDA3937_RS00450 0.83 -0.1
106,233 - DDA3937_RS00450 0.84 -0.5
106,259 - DDA3937_RS00450 0.87 -1.7
106,295 + -0.8
106,295 + -0.4
106,349 + -0.7
106,350 - -0.4
106,400 + +1.1
106,400 + -0.4
106,439 + +0.5
106,440 - -0.7
106,458 + +2.1
106,458 + -0.3
106,458 + +0.8
106,459 - -0.6
106,635 + DDA3937_RS00455 0.13 +0.4
106,636 - DDA3937_RS00455 0.13 -0.1
106,636 - DDA3937_RS00455 0.13 -0.4
106,647 + DDA3937_RS00455 0.14 -0.4
106,648 - DDA3937_RS00455 0.14 -0.8
106,648 - DDA3937_RS00455 0.14 -0.4
106,710 + DDA3937_RS00455 0.19 +0.5
106,724 + DDA3937_RS00455 0.20 -0.7
106,752 + DDA3937_RS00455 0.22 +0.1
106,752 + DDA3937_RS00455 0.22 +0.5
106,752 + DDA3937_RS00455 0.22 -0.5
106,752 + DDA3937_RS00455 0.22 +0.9
106,752 + DDA3937_RS00455 0.22 -1.8
106,753 - DDA3937_RS00455 0.22 -0.1
106,753 - DDA3937_RS00455 0.22 -0.0
106,753 - DDA3937_RS00455 0.22 +0.1
106,809 + DDA3937_RS00455 0.26 -1.2
106,810 - DDA3937_RS00455 0.26 -0.9
106,810 - DDA3937_RS00455 0.26 +1.1
106,904 - DDA3937_RS00455 0.33 -0.5
107,144 + DDA3937_RS00455 0.51 +0.4
107,157 + DDA3937_RS00455 0.52 -1.4
107,158 - DDA3937_RS00455 0.52 +0.9
107,158 - DDA3937_RS00455 0.52 +0.6
107,158 - DDA3937_RS00455 0.52 -0.7
107,158 - DDA3937_RS00455 0.52 -0.0
107,190 + DDA3937_RS00455 0.55 -0.4
107,190 + DDA3937_RS00455 0.55 -3.3
107,268 + DDA3937_RS00455 0.60 -2.7
107,268 + DDA3937_RS00455 0.60 -0.3
107,268 + DDA3937_RS00455 0.60 -0.7
107,268 + DDA3937_RS00455 0.60 -0.9
107,268 + DDA3937_RS00455 0.60 +2.9
107,269 - -0.6
107,269 - DDA3937_RS00455 0.60 +0.6
107,269 - DDA3937_RS00455 0.60 +0.6
107,277 + DDA3937_RS00455 0.61 -1.4
107,277 + DDA3937_RS00455 0.61 -1.3
107,278 - DDA3937_RS00455 0.61 -0.8
107,331 - DDA3937_RS00455 0.65 +0.0

Or see this region's nucleotide sequence