Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00315 and DDA3937_RS00320 are separated by 27 nucleotides DDA3937_RS00320 and DDA3937_RS00325 are separated by 198 nucleotides DDA3937_RS00325 and DDA3937_RS00330 are separated by 123 nucleotides
DDA3937_RS00315: DDA3937_RS00315 - ABC transporter ATP-binding protein, at 73,614 to 74,717
_RS00315
DDA3937_RS00320: DDA3937_RS00320 - endonuclease/exonuclease/phosphatase family protein, at 74,745 to 75,608
_RS00320
DDA3937_RS00325: DDA3937_RS00325 - DUF1471 domain-containing protein, at 75,807 to 76,073
_RS00325
DDA3937_RS00330: DDA3937_RS00330 - hypothetical protein, at 76,197 to 76,829
_RS00330
Position (kb) 74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.770 kb on + strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.771 kb on - strand, within DDA3937_RS00315 at 73.863 kb on + strand, within DDA3937_RS00315 at 73.890 kb on + strand, within DDA3937_RS00315 at 73.890 kb on + strand, within DDA3937_RS00315 at 73.975 kb on + strand, within DDA3937_RS00315 at 74.120 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.225 kb on + strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.226 kb on - strand, within DDA3937_RS00315 at 74.231 kb on + strand, within DDA3937_RS00315 at 74.277 kb on + strand, within DDA3937_RS00315 at 74.295 kb on - strand, within DDA3937_RS00315 at 74.380 kb on + strand, within DDA3937_RS00315 at 74.380 kb on + strand at 74.380 kb on + strand, within DDA3937_RS00315 at 74.380 kb on + strand, within DDA3937_RS00315 at 74.381 kb on - strand, within DDA3937_RS00315 at 74.381 kb on - strand, within DDA3937_RS00315 at 74.404 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315 at 74.581 kb on - strand, within DDA3937_RS00315 at 74.675 kb on - strand at 74.675 kb on - strand at 74.716 kb on - strand at 74.718 kb on + strand at 74.728 kb on + strand at 74.728 kb on + strand at 74.728 kb on + strand at 74.728 kb on + strand at 74.729 kb on - strand at 74.729 kb on - strand at 74.729 kb on - strand at 74.750 kb on + strand at 74.750 kb on + strand at 74.750 kb on + strand at 74.751 kb on - strand at 74.751 kb on - strand at 74.751 kb on - strand at 74.751 kb on - strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.756 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.760 kb on + strand at 74.761 kb on - strand at 74.761 kb on - strand at 74.761 kb on - strand at 74.772 kb on + strand at 74.773 kb on - strand at 74.846 kb on + strand, within DDA3937_RS00320 at 74.846 kb on + strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.847 kb on - strand, within DDA3937_RS00320 at 74.937 kb on + strand, within DDA3937_RS00320 at 74.937 kb on + strand, within DDA3937_RS00320 at 74.938 kb on - strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.095 kb on + strand, within DDA3937_RS00320 at 75.096 kb on - strand, within DDA3937_RS00320 at 75.098 kb on - strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.153 kb on + strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.154 kb on - strand, within DDA3937_RS00320 at 75.155 kb on + strand, within DDA3937_RS00320 at 75.155 kb on + strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.156 kb on - strand, within DDA3937_RS00320 at 75.158 kb on + strand, within DDA3937_RS00320 at 75.158 kb on + strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.159 kb on - strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.366 kb on + strand, within DDA3937_RS00320 at 75.367 kb on - strand, within DDA3937_RS00320 at 75.474 kb on - strand, within DDA3937_RS00320 at 75.474 kb on - strand, within DDA3937_RS00320 at 75.657 kb on - strand at 75.700 kb on - strand at 75.734 kb on + strand at 75.898 kb on + strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.899 kb on - strand, within DDA3937_RS00325 at 75.947 kb on + strand, within DDA3937_RS00325 at 76.055 kb on - strand at 76.065 kb on + strand at 76.065 kb on + strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.066 kb on - strand at 76.071 kb on + strand at 76.071 kb on + strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.072 kb on - strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.079 kb on + strand at 76.080 kb on - strand at 76.080 kb on - strand at 76.080 kb on - strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.083 kb on + strand at 76.084 kb on - strand at 76.085 kb on + strand at 76.086 kb on - strand at 76.118 kb on - strand at 76.118 kb on - strand at 76.124 kb on + strand at 76.125 kb on - strand at 76.125 kb on - strand at 76.125 kb on - strand at 76.243 kb on + strand at 76.341 kb on - strand, within DDA3937_RS00330 at 76.361 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.374 kb on + strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.375 kb on - strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.418 kb on + strand, within DDA3937_RS00330 at 76.419 kb on - strand, within DDA3937_RS00330 at 76.419 kb on - strand, within DDA3937_RS00330 at 76.422 kb on + strand, within DDA3937_RS00330 at 76.422 kb on + strand, within DDA3937_RS00330 at 76.431 kb on - strand, within DDA3937_RS00330 at 76.431 kb on - strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.478 kb on + strand, within DDA3937_RS00330 at 76.509 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.565 kb on + strand, within DDA3937_RS00330 at 76.566 kb on - strand, within DDA3937_RS00330 at 76.566 kb on - strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.568 kb on + strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330 at 76.569 kb on - strand, within DDA3937_RS00330
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 73,770 + DDA3937_RS00315 0.14 +0.1 73,770 + DDA3937_RS00315 0.14 +0.7 73,770 + DDA3937_RS00315 0.14 -0.4 73,770 + +2.2 73,770 + DDA3937_RS00315 0.14 -0.9 73,770 + DDA3937_RS00315 0.14 +0.9 73,770 + DDA3937_RS00315 0.14 -1.2 73,771 - DDA3937_RS00315 0.14 -0.4 73,771 - DDA3937_RS00315 0.14 +0.4 73,771 - DDA3937_RS00315 0.14 +1.9 73,863 + DDA3937_RS00315 0.23 -0.4 73,890 + DDA3937_RS00315 0.25 +0.4 73,890 + DDA3937_RS00315 0.25 -0.8 73,975 + DDA3937_RS00315 0.33 -1.8 74,120 + DDA3937_RS00315 0.46 -0.2 74,225 + DDA3937_RS00315 0.55 +0.5 74,225 + -0.2 74,225 + DDA3937_RS00315 0.55 -1.2 74,225 + DDA3937_RS00315 0.55 -0.1 74,225 + DDA3937_RS00315 0.55 +0.0 74,225 + DDA3937_RS00315 0.55 -1.3 74,225 + DDA3937_RS00315 0.55 -0.8 74,225 + DDA3937_RS00315 0.55 +1.0 74,225 + DDA3937_RS00315 0.55 -0.0 74,226 - DDA3937_RS00315 0.55 -1.8 74,226 - DDA3937_RS00315 0.55 +0.2 74,226 - DDA3937_RS00315 0.55 -0.6 74,231 + DDA3937_RS00315 0.56 -1.5 74,277 + DDA3937_RS00315 0.60 +1.5 74,295 - DDA3937_RS00315 0.62 -0.4 74,380 + DDA3937_RS00315 0.69 -1.0 74,380 + +2.4 74,380 + DDA3937_RS00315 0.69 -1.4 74,380 + DDA3937_RS00315 0.69 -0.3 74,381 - DDA3937_RS00315 0.69 +0.9 74,381 - DDA3937_RS00315 0.69 -2.3 74,404 - DDA3937_RS00315 0.72 -0.2 74,581 - DDA3937_RS00315 0.88 -1.3 74,581 - DDA3937_RS00315 0.88 -0.4 74,581 - DDA3937_RS00315 0.88 -2.5 74,675 - +0.3 74,675 - -0.8 74,716 - +0.0 74,718 + -1.6 74,728 + -1.0 74,728 + -0.2 74,728 + -3.3 74,728 + -1.2 74,729 - -2.7 74,729 - -0.5 74,729 - -1.9 74,750 + -1.7 74,750 + -1.3 74,750 + -0.1 74,751 - -0.6 74,751 - +0.9 74,751 - -0.3 74,751 - +1.1 74,756 + -0.5 74,756 + -0.7 74,756 + -0.5 74,756 + -0.5 74,756 + -0.2 74,760 + -0.4 74,760 + +0.4 74,760 + +0.5 74,760 + -0.1 74,760 + -1.1 74,761 - -0.0 74,761 - -0.6 74,761 - -1.0 74,772 + -1.2 74,773 - -1.2 74,846 + DDA3937_RS00320 0.12 -1.2 74,846 + DDA3937_RS00320 0.12 -1.4 74,847 - DDA3937_RS00320 0.12 +0.1 74,847 - DDA3937_RS00320 0.12 -0.9 74,847 - DDA3937_RS00320 0.12 -0.9 74,847 - DDA3937_RS00320 0.12 -0.2 74,937 + DDA3937_RS00320 0.22 -0.6 74,937 + DDA3937_RS00320 0.22 +0.6 74,938 - DDA3937_RS00320 0.22 +0.3 75,095 + DDA3937_RS00320 0.41 -0.8 75,095 + DDA3937_RS00320 0.41 +1.0 75,095 + DDA3937_RS00320 0.41 +0.5 75,095 + DDA3937_RS00320 0.41 +0.4 75,096 - DDA3937_RS00320 0.41 -0.2 75,098 - DDA3937_RS00320 0.41 -0.4 75,153 + DDA3937_RS00320 0.47 -0.1 75,153 + DDA3937_RS00320 0.47 -1.4 75,153 + DDA3937_RS00320 0.47 -1.7 75,153 + DDA3937_RS00320 0.47 -0.7 75,153 + DDA3937_RS00320 0.47 -0.1 75,153 + DDA3937_RS00320 0.47 -2.9 75,153 + DDA3937_RS00320 0.47 -1.0 75,153 + DDA3937_RS00320 0.47 -2.1 75,153 + DDA3937_RS00320 0.47 -0.9 75,154 - DDA3937_RS00320 0.47 -1.2 75,154 - DDA3937_RS00320 0.47 +0.3 75,154 - DDA3937_RS00320 0.47 -0.0 75,154 - DDA3937_RS00320 0.47 -0.3 75,155 + DDA3937_RS00320 0.47 +0.2 75,155 + DDA3937_RS00320 0.47 -0.1 75,156 - DDA3937_RS00320 0.48 -2.9 75,156 - DDA3937_RS00320 0.48 -1.9 75,156 - DDA3937_RS00320 0.48 -0.8 75,158 + DDA3937_RS00320 0.48 -0.4 75,158 + DDA3937_RS00320 0.48 -0.5 75,159 - DDA3937_RS00320 0.48 -0.7 75,159 - DDA3937_RS00320 0.48 +0.7 75,159 - DDA3937_RS00320 0.48 -2.2 75,366 + DDA3937_RS00320 0.72 -0.2 75,366 + DDA3937_RS00320 0.72 +0.4 75,366 + DDA3937_RS00320 0.72 -1.0 75,367 - DDA3937_RS00320 0.72 -0.2 75,474 - DDA3937_RS00320 0.84 +0.1 75,474 - DDA3937_RS00320 0.84 +0.3 75,657 - -0.2 75,700 - -1.4 75,734 + -0.9 75,898 + DDA3937_RS00325 0.34 +0.1 75,899 - DDA3937_RS00325 0.34 -0.1 75,899 - DDA3937_RS00325 0.34 +0.5 75,899 - DDA3937_RS00325 0.34 +1.0 75,947 + DDA3937_RS00325 0.52 +0.7 76,055 - -0.4 76,065 + -1.9 76,065 + -0.5 76,066 - -0.1 76,066 - -0.8 76,066 - +0.2 76,066 - -0.2 76,066 - -0.8 76,071 + -0.2 76,071 + +0.4 76,072 - -0.6 76,072 - -0.8 76,072 - -1.3 76,072 - +0.3 76,072 - -0.0 76,079 + -0.3 76,079 + -3.4 76,079 + -1.3 76,079 + -0.2 76,080 - +2.4 76,080 - -0.9 76,080 - -0.6 76,083 + -0.8 76,083 + -0.2 76,083 + -1.4 76,083 + +0.1 76,083 + +0.1 76,084 - -1.2 76,085 + -0.6 76,086 - -0.6 76,118 - +0.8 76,118 - -0.1 76,124 + -0.9 76,125 - -1.1 76,125 - +0.7 76,125 - +0.0 76,243 + +0.1 76,341 - DDA3937_RS00330 0.23 -0.5 76,361 + DDA3937_RS00330 0.26 -0.1 76,374 + DDA3937_RS00330 0.28 +0.6 76,374 + DDA3937_RS00330 0.28 +0.4 76,374 + DDA3937_RS00330 0.28 +0.8 76,374 + DDA3937_RS00330 0.28 -0.9 76,375 - DDA3937_RS00330 0.28 -0.8 76,375 - DDA3937_RS00330 0.28 +0.4 76,375 - DDA3937_RS00330 0.28 +0.4 76,375 - DDA3937_RS00330 0.28 +0.7 76,418 + DDA3937_RS00330 0.35 +0.9 76,418 + DDA3937_RS00330 0.35 -0.5 76,418 + DDA3937_RS00330 0.35 -1.4 76,418 + DDA3937_RS00330 0.35 +0.7 76,419 - DDA3937_RS00330 0.35 -0.5 76,419 - DDA3937_RS00330 0.35 -0.3 76,422 + DDA3937_RS00330 0.36 +2.9 76,422 + DDA3937_RS00330 0.36 +0.4 76,431 - DDA3937_RS00330 0.37 -1.9 76,431 - DDA3937_RS00330 0.37 +0.1 76,478 + DDA3937_RS00330 0.44 -0.6 76,478 + DDA3937_RS00330 0.44 +0.7 76,478 + DDA3937_RS00330 0.44 -0.2 76,509 + DDA3937_RS00330 0.49 +0.1 76,565 + DDA3937_RS00330 0.58 -0.2 76,565 + DDA3937_RS00330 0.58 +0.1 76,565 + DDA3937_RS00330 0.58 +0.6 76,565 + DDA3937_RS00330 0.58 +1.9 76,566 - DDA3937_RS00330 0.58 -0.4 76,566 - DDA3937_RS00330 0.58 -1.0 76,568 + DDA3937_RS00330 0.59 -2.2 76,568 + DDA3937_RS00330 0.59 -0.8 76,568 + DDA3937_RS00330 0.59 -1.1 76,568 + DDA3937_RS00330 0.59 -0.3 76,568 + DDA3937_RS00330 0.59 -0.1 76,568 + DDA3937_RS00330 0.59 -0.8 76,569 - DDA3937_RS00330 0.59 -1.2 76,569 - DDA3937_RS00330 0.59 -1.2 76,569 - DDA3937_RS00330 0.59 +0.7
Or see this region's nucleotide sequence