Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS00120 and DDA3937_RS22930 are separated by 74 nucleotides DDA3937_RS22930 and DDA3937_RS00125 are separated by 146 nucleotides DDA3937_RS00125 and DDA3937_RS00130 are separated by 8 nucleotides
DDA3937_RS00120: DDA3937_RS00120 - oxygen-independent coproporphyrinogen III oxidase, at 26,673 to 28,046
_RS00120
DDA3937_RS22930: DDA3937_RS22930 - YshB family small membrane protein, at 28,121 to 28,243
_RS22930
DDA3937_RS00125: DDA3937_RS00125 - nitrogen regulation protein NR(I), at 28,390 to 29,802
_RS00125
DDA3937_RS00130: DDA3937_RS00130 - nitrogen regulation protein NR(II), at 29,811 to 30,860
_RS00130
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 27.396 kb on + strand, within DDA3937_RS00120 at 27.517 kb on - strand, within DDA3937_RS00120 at 27.610 kb on - strand, within DDA3937_RS00120 at 27.610 kb on - strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.611 kb on + strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.612 kb on - strand, within DDA3937_RS00120 at 27.662 kb on + strand, within DDA3937_RS00120 at 27.662 kb on + strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.663 kb on - strand, within DDA3937_RS00120 at 27.678 kb on + strand, within DDA3937_RS00120 at 27.679 kb on - strand, within DDA3937_RS00120 at 27.679 kb on - strand, within DDA3937_RS00120 at 27.708 kb on + strand, within DDA3937_RS00120 at 27.708 kb on + strand, within DDA3937_RS00120 at 27.708 kb on + strand, within DDA3937_RS00120 at 27.709 kb on - strand, within DDA3937_RS00120 at 27.709 kb on - strand, within DDA3937_RS00120 at 27.709 kb on - strand, within DDA3937_RS00120 at 27.711 kb on + strand, within DDA3937_RS00120 at 27.711 kb on + strand, within DDA3937_RS00120 at 27.711 kb on + strand, within DDA3937_RS00120 at 27.712 kb on - strand, within DDA3937_RS00120 at 27.712 kb on - strand, within DDA3937_RS00120 at 27.712 kb on - strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.790 kb on + strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.791 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.794 kb on - strand, within DDA3937_RS00120 at 27.846 kb on + strand, within DDA3937_RS00120 at 27.846 kb on + strand, within DDA3937_RS00120 at 27.868 kb on - strand, within DDA3937_RS00120 at 27.923 kb on + strand at 27.923 kb on + strand at 27.977 kb on + strand at 27.977 kb on + strand at 27.978 kb on - strand at 27.978 kb on - strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 27.999 kb on + strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.000 kb on - strand at 28.040 kb on + strand at 28.040 kb on + strand at 28.062 kb on + strand at 28.062 kb on + strand at 28.107 kb on + strand at 28.107 kb on + strand at 28.107 kb on + strand at 28.108 kb on - strand at 28.122 kb on + strand at 28.122 kb on + strand at 28.123 kb on - strand at 28.123 kb on - strand at 28.274 kb on + strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.275 kb on - strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.294 kb on + strand at 28.295 kb on - strand at 28.300 kb on - strand at 28.306 kb on + strand at 28.306 kb on + strand at 28.307 kb on - strand at 28.307 kb on - strand at 28.307 kb on - strand at 28.320 kb on + strand at 28.320 kb on + strand at 28.320 kb on + strand at 28.321 kb on - strand at 28.325 kb on + strand at 28.325 kb on + strand at 28.325 kb on + strand at 28.325 kb on + strand at 28.326 kb on - strand at 28.326 kb on - strand at 28.326 kb on - strand at 28.327 kb on + strand at 28.327 kb on + strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.328 kb on - strand at 28.372 kb on + strand at 28.829 kb on + strand, within DDA3937_RS00125 at 29.438 kb on + strand, within DDA3937_RS00125 at 29.614 kb on + strand, within DDA3937_RS00125 at 29.653 kb on + strand, within DDA3937_RS00125 at 29.653 kb on + strand, within DDA3937_RS00125 at 29.654 kb on - strand, within DDA3937_RS00125 at 29.654 kb on - strand, within DDA3937_RS00125 at 29.788 kb on + strand at 29.788 kb on + strand at 29.789 kb on - strand at 29.830 kb on + strand at 29.831 kb on - strand at 29.831 kb on - strand at 29.957 kb on - strand, within DDA3937_RS00130 at 29.957 kb on - strand, within DDA3937_RS00130 at 29.957 kb on - strand, within DDA3937_RS00130 at 29.957 kb on - strand, within DDA3937_RS00130 at 30.126 kb on - strand, within DDA3937_RS00130 at 30.126 kb on - strand, within DDA3937_RS00130 at 30.139 kb on - strand, within DDA3937_RS00130 at 30.139 kb on - strand, within DDA3937_RS00130 at 30.147 kb on + strand, within DDA3937_RS00130 at 30.147 kb on + strand, within DDA3937_RS00130 at 30.148 kb on - strand, within DDA3937_RS00130 at 30.148 kb on - strand, within DDA3937_RS00130 at 30.148 kb on - strand, within DDA3937_RS00130 at 30.191 kb on - strand, within DDA3937_RS00130 at 30.191 kb on - strand, within DDA3937_RS00130 at 30.191 kb on - strand, within DDA3937_RS00130 at 30.191 kb on - strand, within DDA3937_RS00130 at 30.324 kb on - strand, within DDA3937_RS00130 at 30.362 kb on - strand, within DDA3937_RS00130 at 30.362 kb on - strand, within DDA3937_RS00130 at 30.362 kb on - strand, within DDA3937_RS00130 at 30.400 kb on - strand, within DDA3937_RS00130 at 30.400 kb on - strand, within DDA3937_RS00130 at 30.400 kb on - strand, within DDA3937_RS00130 at 30.591 kb on - strand, within DDA3937_RS00130 at 30.789 kb on - strand at 30.798 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 27,396 + DDA3937_RS00120 0.53 +0.6 27,517 - DDA3937_RS00120 0.61 +0.1 27,610 - DDA3937_RS00120 0.68 -0.0 27,610 - DDA3937_RS00120 0.68 -0.1 27,611 + DDA3937_RS00120 0.68 -0.1 27,611 + DDA3937_RS00120 0.68 +0.8 27,611 + +0.4 27,611 + DDA3937_RS00120 0.68 -0.5 27,611 + DDA3937_RS00120 0.68 -0.5 27,611 + DDA3937_RS00120 0.68 -0.3 27,611 + DDA3937_RS00120 0.68 -1.3 27,611 + DDA3937_RS00120 0.68 -0.5 27,611 + DDA3937_RS00120 0.68 -0.6 27,612 - DDA3937_RS00120 0.68 +0.1 27,612 - DDA3937_RS00120 0.68 -1.8 27,612 - +1.4 27,612 - DDA3937_RS00120 0.68 -0.8 27,612 - DDA3937_RS00120 0.68 +0.4 27,612 - DDA3937_RS00120 0.68 +0.6 27,612 - DDA3937_RS00120 0.68 -1.2 27,662 + DDA3937_RS00120 0.72 -1.4 27,662 + DDA3937_RS00120 0.72 +0.2 27,663 - DDA3937_RS00120 0.72 -0.7 27,663 - DDA3937_RS00120 0.72 -0.1 27,663 - DDA3937_RS00120 0.72 -0.9 27,663 - DDA3937_RS00120 0.72 -0.9 27,663 - DDA3937_RS00120 0.72 -0.1 27,663 - DDA3937_RS00120 0.72 +0.6 27,678 + DDA3937_RS00120 0.73 -1.5 27,679 - DDA3937_RS00120 0.73 -1.2 27,679 - DDA3937_RS00120 0.73 -1.6 27,708 + DDA3937_RS00120 0.75 +1.5 27,708 + DDA3937_RS00120 0.75 -1.3 27,708 + DDA3937_RS00120 0.75 +1.2 27,709 - DDA3937_RS00120 0.75 -0.1 27,709 - DDA3937_RS00120 0.75 -0.2 27,709 - DDA3937_RS00120 0.75 +0.6 27,711 + DDA3937_RS00120 0.76 -1.1 27,711 + DDA3937_RS00120 0.76 -0.9 27,711 + DDA3937_RS00120 0.76 +0.2 27,712 - DDA3937_RS00120 0.76 -1.2 27,712 - DDA3937_RS00120 0.76 -0.8 27,712 - DDA3937_RS00120 0.76 -0.9 27,790 + DDA3937_RS00120 0.81 -0.7 27,790 + DDA3937_RS00120 0.81 +0.3 27,790 + DDA3937_RS00120 0.81 -0.2 27,790 + DDA3937_RS00120 0.81 +0.8 27,790 + DDA3937_RS00120 0.81 -1.1 27,790 + DDA3937_RS00120 0.81 +0.1 27,790 + DDA3937_RS00120 0.81 -2.9 27,791 - DDA3937_RS00120 0.81 -0.1 27,791 - DDA3937_RS00120 0.81 -0.1 27,791 - DDA3937_RS00120 0.81 -0.6 27,791 - DDA3937_RS00120 0.81 -1.6 27,794 - DDA3937_RS00120 0.82 +0.2 27,794 - DDA3937_RS00120 0.82 -0.6 27,794 - DDA3937_RS00120 0.82 -0.4 27,794 - DDA3937_RS00120 0.82 +0.1 27,794 - DDA3937_RS00120 0.82 -0.8 27,846 + DDA3937_RS00120 0.85 -0.4 27,846 + DDA3937_RS00120 0.85 -0.4 27,868 - DDA3937_RS00120 0.87 -0.1 27,923 + -0.2 27,923 + -0.6 27,977 + -0.4 27,977 + -0.5 27,978 - -0.9 27,978 - -1.2 27,999 + -1.6 27,999 + -0.8 27,999 + -0.4 27,999 + +0.3 27,999 + -1.3 27,999 + -2.9 28,000 - -1.5 28,000 - +0.5 28,000 - +1.0 28,000 - +0.4 28,000 - -0.5 28,000 - -0.1 28,000 - -0.1 28,000 - -0.9 28,000 - -0.2 28,040 + +0.6 28,040 + +1.7 28,062 + -0.6 28,062 + -1.9 28,107 + -2.0 28,107 + +1.7 28,107 + +0.1 28,108 - +0.1 28,122 + -2.7 28,122 + -1.8 28,123 - +0.4 28,123 - +0.9 28,274 + -0.4 28,275 - -1.8 28,275 - +0.1 28,275 - -0.1 28,275 - -0.4 28,275 - +0.0 28,275 - +3.3 28,294 + -0.2 28,294 + +1.0 28,294 + -1.6 28,294 + -0.4 28,294 + -0.9 28,294 + -0.2 28,295 - -1.4 28,300 - +0.8 28,306 + -0.4 28,306 + +0.0 28,307 - +0.5 28,307 - -1.2 28,307 - -0.9 28,320 + -0.6 28,320 + -2.2 28,320 + -2.3 28,321 - +0.7 28,325 + +0.9 28,325 + -0.6 28,325 + -0.2 28,325 + -0.1 28,326 - +1.4 28,326 - -0.6 28,326 - -1.7 28,327 + -0.4 28,327 + +0.4 28,328 - +1.0 28,328 - +0.4 28,328 - -0.4 28,328 - +0.1 28,328 - -1.6 28,328 - -1.6 28,372 + -0.7 28,829 + DDA3937_RS00125 0.31 +0.4 29,438 + DDA3937_RS00125 0.74 +0.4 29,614 + DDA3937_RS00125 0.87 -2.0 29,653 + DDA3937_RS00125 0.89 -0.9 29,653 + DDA3937_RS00125 0.89 -0.6 29,654 - DDA3937_RS00125 0.89 -0.6 29,654 - DDA3937_RS00125 0.89 -1.6 29,788 + +0.4 29,788 + -2.1 29,789 - -0.0 29,830 + -2.6 29,831 - +1.6 29,831 - -1.3 29,957 - DDA3937_RS00130 0.14 +0.4 29,957 - DDA3937_RS00130 0.14 -1.3 29,957 - DDA3937_RS00130 0.14 +0.4 29,957 - DDA3937_RS00130 0.14 -2.4 30,126 - DDA3937_RS00130 0.30 +1.4 30,126 - DDA3937_RS00130 0.30 +0.7 30,139 - DDA3937_RS00130 0.31 -1.6 30,139 - DDA3937_RS00130 0.31 +0.6 30,147 + DDA3937_RS00130 0.32 -0.6 30,147 + DDA3937_RS00130 0.32 +0.2 30,148 - DDA3937_RS00130 0.32 -1.4 30,148 - DDA3937_RS00130 0.32 -2.3 30,148 - DDA3937_RS00130 0.32 -0.6 30,191 - DDA3937_RS00130 0.36 -0.5 30,191 - DDA3937_RS00130 0.36 +2.2 30,191 - DDA3937_RS00130 0.36 +0.1 30,191 - DDA3937_RS00130 0.36 -0.5 30,324 - DDA3937_RS00130 0.49 +0.8 30,362 - DDA3937_RS00130 0.52 -0.8 30,362 - DDA3937_RS00130 0.52 -1.9 30,362 - DDA3937_RS00130 0.52 +1.2 30,400 - DDA3937_RS00130 0.56 -0.4 30,400 - DDA3937_RS00130 0.56 +0.5 30,400 - DDA3937_RS00130 0.56 -0.9 30,591 - DDA3937_RS00130 0.74 -1.2 30,789 - -1.2 30,798 + -0.9
Or see this region's nucleotide sequence