Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS22935

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
80,997	-		DDA3937_RS00345	0.75	+1.8
81,061	+		DDA3937_RS00345	0.80	-0.2
81,061	+		DDA3937_RS00345	0.80	-1.0
81,062	-		DDA3937_RS00345	0.80	+1.8
81,125	+		DDA3937_RS00345	0.84	+1.8
81,182	+		DDA3937_RS00345	0.88	-0.2
81,182	+		DDA3937_RS00345	0.88	-0.7
81,182	+		DDA3937_RS00345	0.88	+0.8
81,183	-		DDA3937_RS00345	0.88	-1.0
81,183	-		DDA3937_RS00345	0.88	-1.1
81,183	-		DDA3937_RS00345	0.88	-1.3
81,203	-		DDA3937_RS00345	0.89	+0.1
81,213	+		DDA3937_RS00345	0.90	-1.3
81,214	-		DDA3937_RS00345	0.90	+2.3
81,214	-		DDA3937_RS00345	0.90	-1.3
81,342	-				-1.6
81,381	+				-0.5
81,381	+				-0.8
81,382	-				+2.3
81,398	+				+0.9
81,413	+				+0.9
81,433	+				-1.2
81,433	+				-0.9
81,433	+				-1.2
81,433	+				-3.2
81,434	-				-1.0
81,434	-				-1.7
81,438	+				+2.0
81,438	+				+1.1
81,439	-				-0.2
81,439	-				+0.3
81,439	-				-0.5
81,439	-				-1.4
81,439	-				-1.0
81,439	-				-0.1
81,440	+				-0.5
81,440	+				-0.2
81,440	+				-2.5
81,441	-				-1.4
81,456	+				-0.7
81,457	-				-0.5
81,457	-				+2.4
81,474	-				-0.5
81,623	+		DDA3937_RS00350	0.37	-2.2
81,624	-		DDA3937_RS00350	0.37	+0.2
81,635	+		DDA3937_RS00350	0.40	-1.2
81,635	+		DDA3937_RS00350	0.40	-0.9
81,635	+		DDA3937_RS00350	0.40	+1.8
81,636	-		DDA3937_RS00350	0.41	+0.8
81,636	-		DDA3937_RS00350	0.41	+5.6
81,636	-		DDA3937_RS00350	0.41	-0.4
81,636	-		DDA3937_RS00350	0.41	-1.5
81,636	-		DDA3937_RS00350	0.41	-1.5
81,636	-		DDA3937_RS00350	0.41	+0.2
81,636	-		DDA3937_RS00350	0.41	+0.5
81,636	-		DDA3937_RS00350	0.41	-1.4
81,636	-		DDA3937_RS00350	0.41	-0.8
81,636	-		DDA3937_RS00350	0.41	-0.0
81,636	-		DDA3937_RS00350	0.41	-0.7
81,636	-		DDA3937_RS00350	0.41	+0.0
81,636	-		DDA3937_RS00350	0.41	+0.3
81,636	-		DDA3937_RS00350	0.41	-0.3
81,641	+		DDA3937_RS00350	0.42	-1.2
81,641	+		DDA3937_RS00350	0.42	-1.2
81,641	+		DDA3937_RS00350	0.42	-0.7
81,641	+		DDA3937_RS00350	0.42	+2.8
81,641	+		DDA3937_RS00350	0.42	-0.7
81,641	+		DDA3937_RS00350	0.42	-2.0
81,641	+		DDA3937_RS00350	0.42	+0.6
81,641	+		DDA3937_RS00350	0.42	-2.6
81,642	-		DDA3937_RS00350	0.43	-0.6
81,642	-		DDA3937_RS00350	0.43	-1.0
81,642	-		DDA3937_RS00350	0.43	+0.8
81,642	-		DDA3937_RS00350	0.43	-0.3
81,642	-		DDA3937_RS00350	0.43	-0.2
81,642	-		DDA3937_RS00350	0.43	+0.3
81,642	-		DDA3937_RS00350	0.43	-0.8
81,707	+		DDA3937_RS00350	0.62	+0.7
81,707	+		DDA3937_RS00350	0.62	+2.6
81,707	+		DDA3937_RS00350	0.62	-0.9
81,707	+		DDA3937_RS00350	0.62	-1.8
81,707	+		DDA3937_RS00350	0.62	-0.2
81,708	-		DDA3937_RS00350	0.62	-0.4
81,708	-		DDA3937_RS00350	0.62	-0.1
81,708	-		DDA3937_RS00350	0.62	+0.2
81,708	-		DDA3937_RS00350	0.62	+0.5
81,708	-		DDA3937_RS00350	0.62	+0.3
81,708	-		DDA3937_RS00350	0.62	-1.3
81,713	+		DDA3937_RS00350	0.64	-1.6
81,713	+		DDA3937_RS00350	0.64	+0.0
81,713	+		DDA3937_RS00350	0.64	-1.3
81,713	+		DDA3937_RS00350	0.64	+0.7
81,713	+		DDA3937_RS00350	0.64	-2.5
81,714	-		DDA3937_RS00350	0.64	+0.4
81,714	-		DDA3937_RS00350	0.64	-0.2
81,714	-		DDA3937_RS00350	0.64	-1.0
81,719	-		DDA3937_RS00350	0.65	-2.0
81,719	-		DDA3937_RS00350	0.65	+2.7
81,739	+		DDA3937_RS00350	0.71	-0.3
81,739	+		DDA3937_RS00350	0.71	+0.7
81,740	-		DDA3937_RS00350	0.72	-0.6
81,757	+				+1.5
81,767	+		DDA3937_RS00350	0.80	+0.1
81,768	-		DDA3937_RS00350	0.80	+0.1
81,768	-		DDA3937_RS00350	0.80	-0.3
81,768	-		DDA3937_RS00350	0.80	+1.7
81,768	-		DDA3937_RS00350	0.80	-1.3
81,770	+		DDA3937_RS00350	0.81	-1.3
81,780	+		DDA3937_RS00350	0.84	-0.5
81,780	+		DDA3937_RS00350	0.84	+1.1
81,780	+		DDA3937_RS00350	0.84	-0.1
81,781	-		DDA3937_RS00350	0.84	-1.3
81,781	-		DDA3937_RS00350	0.84	+0.5
81,781	-		DDA3937_RS00350	0.84	+0.1
81,802	+				-0.8
81,802	+				+0.0
81,802	+				-0.7
81,802	+				+1.3
81,802	+				-2.8
81,802	+				-1.5
81,802	+				-0.8
81,802	+				-1.0
81,802	+				+0.7
81,802	+				-2.4
81,802	+				-1.8
81,802	+				-2.7
81,802	+				-1.2
81,802	+				+1.8
81,802	+				-0.5
81,802	+				-0.5
81,802	+				+0.3
81,802	+				+1.6
81,803	-				-1.3
81,803	-				-1.0
81,803	-				-0.6
81,803	-				-1.8
81,825	+				-0.5
81,825	+				+0.6
81,825	+				-0.7
81,826	-				-0.8
81,826	-				-0.2
81,828	+				-0.7
81,828	+				+0.5
81,828	+				-1.5
81,828	+				-0.1
81,829	-				-1.2
81,853	+				+0.3
81,908	+				-0.5
81,909	-				-0.4
81,909	-				-0.2
81,912	+				-0.7
81,912	+				-2.4
81,912	+				+0.1
81,912	+				-2.4
81,912	+				-0.4
81,912	+				-0.3
81,912	+				+0.8
81,913	-				+0.3
81,913	-				-1.0
81,913	-				+0.3
81,924	+				-1.0
81,938	+		DDA3937_RS22935	0.11	-0.6
81,939	-		DDA3937_RS22935	0.12	-0.5
82,037	+		DDA3937_RS22935	0.30	+1.5
82,038	-		DDA3937_RS22935	0.30	+0.5
82,038	-		DDA3937_RS22935	0.30	-0.5
82,038	-		DDA3937_RS22935	0.30	-1.7
82,048	+		DDA3937_RS22935	0.32	-1.4
82,063	+		DDA3937_RS22935	0.34	-1.3
82,136	-		DDA3937_RS22935	0.48	-2.7
82,155	+		DDA3937_RS22935	0.51	-0.6
82,164	+		DDA3937_RS22935	0.53	+0.1
82,164	+		DDA3937_RS22935	0.53	-1.9
82,164	+		DDA3937_RS22935	0.53	+0.5
82,165	-		DDA3937_RS22935	0.53	-1.0
82,166	+		DDA3937_RS22935	0.53	-0.6
82,167	-		DDA3937_RS22935	0.54	-1.0
82,168	+				+1.8
82,168	+		DDA3937_RS22935	0.54	-0.6
82,168	+		DDA3937_RS22935	0.54	-0.7
82,169	-		DDA3937_RS22935	0.54	-2.7
82,169	-		DDA3937_RS22935	0.54	+0.3
82,169	-		DDA3937_RS22935	0.54	-0.4
82,169	-		DDA3937_RS22935	0.54	-1.7
82,192	+		DDA3937_RS22935	0.58	-0.2
82,192	+		DDA3937_RS22935	0.58	-1.0
82,193	-		DDA3937_RS22935	0.58	+0.8
82,196	+		DDA3937_RS22935	0.59	-2.6
82,197	-		DDA3937_RS22935	0.59	+1.3
82,211	-		DDA3937_RS22935	0.62	-0.1
82,228	+		DDA3937_RS22935	0.65	-2.0
82,228	+		DDA3937_RS22935	0.65	+1.8
82,228	+		DDA3937_RS22935	0.65	+0.1
82,228	+		DDA3937_RS22935	0.65	+3.0
82,229	-		DDA3937_RS22935	0.65	-0.7
82,229	-		DDA3937_RS22935	0.65	-0.2
82,229	-		DDA3937_RS22935	0.65	+1.3
82,229	-		DDA3937_RS22935	0.65	+0.6
82,232	+		DDA3937_RS22935	0.66	-0.3
82,232	+		DDA3937_RS22935	0.66	-1.0
82,232	+		DDA3937_RS22935	0.66	+1.2
82,232	+		DDA3937_RS22935	0.66	+0.1
82,232	+		DDA3937_RS22935	0.66	-1.0
82,232	+		DDA3937_RS22935	0.66	+1.8
82,232	+		DDA3937_RS22935	0.66	+1.1
82,233	-		DDA3937_RS22935	0.66	-0.0
82,233	-		DDA3937_RS22935	0.66	-0.3
82,233	-		DDA3937_RS22935	0.66	-0.3
82,246	+		DDA3937_RS22935	0.68	-1.0
82,246	+		DDA3937_RS22935	0.68	+1.3
82,246	+		DDA3937_RS22935	0.68	-2.4
82,246	+		DDA3937_RS22935	0.68	-0.1
82,246	+		DDA3937_RS22935	0.68	-0.2
82,246	+		DDA3937_RS22935	0.68	-1.0
82,247	-		DDA3937_RS22935	0.68	-0.3
82,247	-		DDA3937_RS22935	0.68	-0.7
82,247	-		DDA3937_RS22935	0.68	+0.8
82,247	-		DDA3937_RS22935	0.68	-0.4
82,247	-		DDA3937_RS22935	0.68	-1.2
82,250	+				+1.8
82,250	+		DDA3937_RS22935	0.69	-1.3
82,250	+		DDA3937_RS22935	0.69	-1.7
82,250	+		DDA3937_RS22935	0.69	+1.1
82,250	+		DDA3937_RS22935	0.69	-0.9
82,250	+		DDA3937_RS22935	0.69	+0.5
82,250	+		DDA3937_RS22935	0.69	+1.5
82,251	-		DDA3937_RS22935	0.69	-1.6
82,251	-		DDA3937_RS22935	0.69	-1.0
82,253	+		DDA3937_RS22935	0.69	+0.5
82,319	+		DDA3937_RS22935	0.82	-0.4
82,319	+				+2.3
82,319	+		DDA3937_RS22935	0.82	+0.1
82,320	-		DDA3937_RS22935	0.82	+4.0
82,320	-		DDA3937_RS22935	0.82	+1.4
82,320	-		DDA3937_RS22935	0.82	+1.2
82,345	+		DDA3937_RS22935	0.86	-1.6
82,345	+		DDA3937_RS22935	0.86	-0.7
82,367	+				-0.0
82,367	+				+0.3
82,367	+				-0.2
82,368	-				+1.6
82,368	-				+0.7
82,368	-				+0.7
82,428	+				+0.1
82,429	-				-0.6
82,429	-				-1.4
82,429	-				-0.4
82,435	+				-1.3
82,459	+				+5.5
82,459	+				-1.0
82,459	+				-0.5
82,460	-				-1.0
82,460	-				-1.1
82,500	+		DDA3937_RS00355	0.11	-0.6
82,500	+		DDA3937_RS00355	0.11	-0.3
82,501	-		DDA3937_RS00355	0.11	+0.3
82,508	+		DDA3937_RS00355	0.13	-1.0
82,541	-				+1.8
82,541	-		DDA3937_RS00355	0.20	+0.8
82,541	-		DDA3937_RS00355	0.20	-1.2
82,580	-		DDA3937_RS00355	0.29	+0.5
82,580	-		DDA3937_RS00355	0.29	-1.5
82,591	+		DDA3937_RS00355	0.32	+0.7
82,591	+		DDA3937_RS00355	0.32	-1.7
82,591	+		DDA3937_RS00355	0.32	-1.1
82,592	-		DDA3937_RS00355	0.32	-1.9
82,635	+		DDA3937_RS00355	0.42	-1.0
82,635	+		DDA3937_RS00355	0.42	-0.5
82,635	+		DDA3937_RS00355	0.42	-0.9
82,636	-		DDA3937_RS00355	0.42	-1.0
82,636	-		DDA3937_RS00355	0.42	+0.4
82,636	-		DDA3937_RS00355	0.42	-1.0
82,636	-		DDA3937_RS00355	0.42	-0.2
82,636	-		DDA3937_RS00355	0.42	-0.7
82,752	+		DDA3937_RS00355	0.69	-0.3
82,752	+		DDA3937_RS00355	0.69	-1.0
82,752	+		DDA3937_RS00355	0.69	-0.5
82,752	+		DDA3937_RS00355	0.69	+0.5
82,753	-				+1.3
82,753	-		DDA3937_RS00355	0.69	-1.3
82,753	-		DDA3937_RS00355	0.69	-0.4
82,756	+		DDA3937_RS00355	0.70	-0.2
82,756	+		DDA3937_RS00355	0.70	-0.3
82,756	+		DDA3937_RS00355	0.70	+0.2
82,756	+		DDA3937_RS00355	0.70	-1.7
82,756	+		DDA3937_RS00355	0.70	+5.4
82,756	+		DDA3937_RS00355	0.70	-0.5
82,756	+		DDA3937_RS00355	0.70	-1.2
82,756	+		DDA3937_RS00355	0.70	-1.3
82,756	+		DDA3937_RS00355	0.70	-0.5
82,757	-		DDA3937_RS00355	0.70	+0.3
82,757	-		DDA3937_RS00355	0.70	+3.7
82,757	-		DDA3937_RS00355	0.70	-0.3
82,757	-				+1.3
82,757	-		DDA3937_RS00355	0.70	-0.3
82,757	-		DDA3937_RS00355	0.70	-0.7
82,757	-		DDA3937_RS00355	0.70	-0.9
82,886	-				+0.3
82,886	-				-0.6
82,886	-				+0.8
82,923	+				-0.2
82,924	-				-0.7
82,924	-				-0.9
82,924	-				-0.2
82,931	+				-1.5
82,932	-				-1.8
82,934	+				-0.1
82,934	+				-1.4
82,955	+				+0.7
82,970	-				+0.0
83,215	-		DDA3937_RS00360	0.11	-2.4