Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20980

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,770,323	-		DDA3937_RS20975	0.22	+0.3
4,770,402	+		DDA3937_RS20975	0.29	-1.1
4,770,403	-		DDA3937_RS20975	0.29	-0.7
4,770,403	-		DDA3937_RS20975	0.29	+0.5
4,770,433	-		DDA3937_RS20975	0.32	-1.0
4,770,523	+		DDA3937_RS20975	0.39	+0.4
4,770,524	-		DDA3937_RS20975	0.39	-0.7
4,770,524	-		DDA3937_RS20975	0.39	-0.4
4,770,546	+		DDA3937_RS20975	0.41	-2.1
4,770,546	+		DDA3937_RS20975	0.41	-0.1
4,770,547	-		DDA3937_RS20975	0.41	-1.8
4,770,572	-		DDA3937_RS20975	0.44	-1.3
4,770,664	+		DDA3937_RS20975	0.52	+0.5
4,770,743	-		DDA3937_RS20975	0.58	-0.8
4,770,743	-				-0.5
4,770,794	+		DDA3937_RS20975	0.63	-1.3
4,770,794	+		DDA3937_RS20975	0.63	-0.5
4,770,794	+		DDA3937_RS20975	0.63	-1.3
4,770,794	+		DDA3937_RS20975	0.63	-1.8
4,770,794	+		DDA3937_RS20975	0.63	+0.3
4,770,795	-		DDA3937_RS20975	0.63	+1.3
4,770,795	-		DDA3937_RS20975	0.63	-0.7
4,770,795	-		DDA3937_RS20975	0.63	+0.7
4,770,795	-		DDA3937_RS20975	0.63	-0.7
4,770,795	-		DDA3937_RS20975	0.63	-1.1
4,770,795	-		DDA3937_RS20975	0.63	-1.8
4,770,795	-		DDA3937_RS20975	0.63	+0.9
4,770,796	+		DDA3937_RS20975	0.63	-2.0
4,770,797	-		DDA3937_RS20975	0.63	-0.1
4,770,797	-		DDA3937_RS20975	0.63	-0.7
4,770,829	+				+0.3
4,770,829	+		DDA3937_RS20975	0.66	+1.7
4,770,830	-		DDA3937_RS20975	0.66	-0.4
4,770,868	+		DDA3937_RS20975	0.69	-0.3
4,770,869	-		DDA3937_RS20975	0.69	+1.9
4,770,871	+		DDA3937_RS20975	0.70	-1.7
4,770,871	+				-0.1
4,770,871	+		DDA3937_RS20975	0.70	-1.6
4,770,872	-		DDA3937_RS20975	0.70	-1.1
4,770,872	-		DDA3937_RS20975	0.70	-0.1
4,770,872	-		DDA3937_RS20975	0.70	+0.3
4,770,872	-		DDA3937_RS20975	0.70	-2.3
4,771,084	-		DDA3937_RS20975	0.88	-1.8
4,771,084	-		DDA3937_RS20975	0.88	-1.2
4,771,088	-		DDA3937_RS20975	0.89	-1.4
4,771,088	-		DDA3937_RS20975	0.89	-0.7
4,771,208	+				-1.0
4,771,209	-				-1.0
4,771,227	-				-0.9
4,771,232	+				-1.7
4,771,232	+				-1.0
4,771,232	+				-0.3
4,771,232	+				-0.3
4,771,232	+				-1.0
4,771,233	-				-1.4
4,771,233	-				+0.5
4,771,233	-				-2.3
4,771,236	-				-0.4
4,771,236	-				+0.1
4,771,236	-				+2.5
4,771,245	+				-3.4
4,771,245	+				+0.4
4,771,290	-				-1.2
4,771,348	+				-0.6
4,771,351	+				+2.6
4,771,364	+				+0.0
4,771,364	+				+1.0
4,771,364	+				+0.7
4,771,364	+				-0.6
4,771,365	-				-0.7
4,771,365	-				-0.6
4,771,365	-				+0.0
4,771,508	+		DDA3937_RS20980	0.11	+0.2
4,771,509	-		DDA3937_RS20980	0.11	-0.4
4,771,581	+		DDA3937_RS20980	0.15	-2.1
4,771,582	-		DDA3937_RS20980	0.15	+0.2
4,771,582	-		DDA3937_RS20980	0.15	-0.5
4,771,623	+		DDA3937_RS20980	0.17	-0.8
4,771,623	+		DDA3937_RS20980	0.17	-0.5
4,771,624	-		DDA3937_RS20980	0.17	-1.2
4,771,624	-		DDA3937_RS20980	0.17	+0.0
4,771,624	-		DDA3937_RS20980	0.17	+2.2
4,771,638	+		DDA3937_RS20980	0.18	-0.6
4,771,639	-		DDA3937_RS20980	0.18	-1.5
4,771,639	-		DDA3937_RS20980	0.18	+0.0
4,771,639	-		DDA3937_RS20980	0.18	+3.0
4,771,639	-		DDA3937_RS20980	0.18	-0.3
4,771,639	-		DDA3937_RS20980	0.18	+0.5
4,771,649	+		DDA3937_RS20980	0.19	+1.9
4,771,649	+		DDA3937_RS20980	0.19	+0.3
4,771,650	-		DDA3937_RS20980	0.19	+1.0
4,771,834	+		DDA3937_RS20980	0.28	+1.3
4,771,836	+		DDA3937_RS20980	0.28	-0.4
4,771,836	+		DDA3937_RS20980	0.28	+1.1
4,771,836	+		DDA3937_RS20980	0.28	-0.7
4,771,836	+		DDA3937_RS20980	0.28	-0.4
4,771,836	+		DDA3937_RS20980	0.28	+0.3
4,771,836	+		DDA3937_RS20980	0.28	-0.1
4,771,836	+		DDA3937_RS20980	0.28	+0.1
4,771,837	-		DDA3937_RS20980	0.28	-0.8
4,771,837	-		DDA3937_RS20980	0.28	-2.0
4,771,837	-		DDA3937_RS20980	0.28	-3.0
4,771,837	-		DDA3937_RS20980	0.28	+0.7
4,771,837	-		DDA3937_RS20980	0.28	-1.5
4,771,837	-		DDA3937_RS20980	0.28	-1.0
4,771,837	-		DDA3937_RS20980	0.28	-0.5
4,771,837	-		DDA3937_RS20980	0.28	-1.9
4,772,265	+		DDA3937_RS20980	0.51	-2.1
4,772,265	+		DDA3937_RS20980	0.51	+0.9
4,772,265	+		DDA3937_RS20980	0.51	+1.4
4,772,265	+		DDA3937_RS20980	0.51	-1.3
4,772,265	+		DDA3937_RS20980	0.51	-0.3
4,772,265	+		DDA3937_RS20980	0.51	-0.4
4,772,266	-		DDA3937_RS20980	0.51	+1.3
4,772,266	-		DDA3937_RS20980	0.51	-0.7
4,772,266	-		DDA3937_RS20980	0.51	+1.9
4,772,415	+		DDA3937_RS20980	0.59	+1.8
4,772,416	-		DDA3937_RS20980	0.59	+1.1
4,772,508	+		DDA3937_RS20980	0.64	+0.3
4,772,508	+		DDA3937_RS20980	0.64	+0.4
4,772,508	+		DDA3937_RS20980	0.64	+0.4
4,772,508	+		DDA3937_RS20980	0.64	+0.3
4,772,508	+		DDA3937_RS20980	0.64	+0.5
4,772,508	+				+0.3
4,772,508	+		DDA3937_RS20980	0.64	-0.7
4,772,508	+		DDA3937_RS20980	0.64	+0.7
4,772,508	+		DDA3937_RS20980	0.64	-1.1
4,772,508	+		DDA3937_RS20980	0.64	-0.8
4,772,509	-		DDA3937_RS20980	0.64	-0.5
4,772,509	-		DDA3937_RS20980	0.64	+0.2
4,772,509	-		DDA3937_RS20980	0.64	-0.6
4,772,509	-		DDA3937_RS20980	0.64	+0.3
4,772,509	-		DDA3937_RS20980	0.64	-0.5
4,772,509	-		DDA3937_RS20980	0.64	-1.4
4,772,509	-		DDA3937_RS20980	0.64	-0.3
4,772,509	-		DDA3937_RS20980	0.64	-1.4
4,772,509	-		DDA3937_RS20980	0.64	+0.2
4,772,509	-		DDA3937_RS20980	0.64	-1.7
4,772,509	-		DDA3937_RS20980	0.64	+0.9
4,772,733	-		DDA3937_RS20980	0.75	-1.2
4,772,922	+		DDA3937_RS20980	0.85	-0.4
4,772,945	-		DDA3937_RS20980	0.86	+2.5
4,773,027	+				-0.4
4,773,027	+				-0.1
4,773,027	+				+1.3
4,773,028	-				+3.7
4,773,028	-				-1.2
4,773,089	-				-0.1
4,773,089	-				+0.1
4,773,103	+				+0.3
4,773,145	+				+0.3
4,773,145	+				-0.4
4,773,146	-				-1.0
4,773,146	-				-1.0
4,773,184	+				-0.7
4,773,184	+				+0.2
4,773,184	+				-0.1
4,773,184	+				-0.3
4,773,185	-				-0.8
4,773,187	+				-0.1
4,773,187	+				-2.7
4,773,187	+				-1.5
4,773,187	+				+0.5
4,773,187	+				+1.7
4,773,187	+				-1.4
4,773,187	+				+0.7
4,773,187	+				-0.0
4,773,187	+				+0.1
4,773,187	+				+0.1
4,773,187	+				-1.3
4,773,187	+				-1.1
4,773,187	+				-1.2
4,773,188	-				-0.3
4,773,188	-				+0.1
4,773,188	-				+1.5
4,773,188	-				+1.0
4,773,202	+				+0.7
4,773,202	+				-0.5
4,773,203	-				-1.6
4,773,203	-				+0.8
4,773,208	+				-0.3
4,773,208	+				+1.1
4,773,208	+				-0.3
4,773,208	+				-0.6
4,773,208	+				-0.7
4,773,208	+				-1.3
4,773,208	+				-1.6
4,773,208	+				+2.2
4,773,208	+				+0.4
4,773,208	+				+2.9
4,773,208	+				-0.7
4,773,208	+				+0.3
4,773,209	-				-0.1
4,773,209	-				+1.5
4,773,209	-				+4.2
4,773,209	-				-1.6
4,773,209	-				-0.1
4,773,209	-				+0.5
4,773,209	-				-1.0
4,773,209	-				+2.2
4,773,209	-				-0.2
4,773,209	-				-1.1
4,773,209	-				-0.7
4,773,209	-				-1.8
4,773,253	+				-2.1
4,773,254	-				-1.1
4,773,254	-				-0.5
4,773,254	-				-1.1
4,773,303	+				-0.5
4,773,319	+				-2.0
4,773,374	-				-0.4
4,773,424	+				-0.6
4,773,425	-				-0.1
4,773,425	-				+0.9
4,773,425	-				+1.3
4,773,480	+				-0.8
4,773,599	-				-0.0
4,773,667	-				-0.1
4,773,697	-				-0.1
4,773,777	+		DDA3937_RS20985	0.12	+0.9
4,773,777	+		DDA3937_RS20985	0.12	-1.3
4,773,778	-		DDA3937_RS20985	0.12	-2.0
4,773,778	-		DDA3937_RS20985	0.12	+0.0
4,773,778	-		DDA3937_RS20985	0.12	-0.3
4,773,809	+		DDA3937_RS20985	0.16	+3.5
4,773,855	+		DDA3937_RS20985	0.23	-1.0
4,773,855	+		DDA3937_RS20985	0.23	-2.0
4,773,855	+		DDA3937_RS20985	0.23	-0.6
4,773,856	-		DDA3937_RS20985	0.23	-1.9
4,773,911	+		DDA3937_RS20985	0.30	-1.3
4,773,947	-		DDA3937_RS20985	0.35	-0.8
4,773,948	+		DDA3937_RS20985	0.36	+0.6
4,773,949	-		DDA3937_RS20985	0.36	-0.1
4,773,949	-		DDA3937_RS20985	0.36	-0.1
4,773,949	-		DDA3937_RS20985	0.36	-0.6
4,773,960	+		DDA3937_RS20985	0.37	+0.9
4,773,960	+		DDA3937_RS20985	0.37	-0.1
4,773,960	+		DDA3937_RS20985	0.37	-1.0
4,773,960	+		DDA3937_RS20985	0.37	-1.0
4,773,960	+		DDA3937_RS20985	0.37	-0.4
4,773,962	+		DDA3937_RS20985	0.38	-0.8
4,774,043	+		DDA3937_RS20985	0.49	-1.2
4,774,044	-		DDA3937_RS20985	0.49	-1.8
4,774,044	-		DDA3937_RS20985	0.49	-1.4
4,774,048	+		DDA3937_RS20985	0.50	-1.7
4,774,048	+		DDA3937_RS20985	0.50	-0.4
4,774,049	-		DDA3937_RS20985	0.50	-1.7
4,774,049	-		DDA3937_RS20985	0.50	+0.5
4,774,049	-		DDA3937_RS20985	0.50	-0.9
4,774,049	-		DDA3937_RS20985	0.50	-0.9
4,774,090	+		DDA3937_RS20985	0.56	-1.5
4,774,090	+		DDA3937_RS20985	0.56	+1.3
4,774,090	+		DDA3937_RS20985	0.56	-1.2
4,774,091	-		DDA3937_RS20985	0.56	-2.1
4,774,091	-		DDA3937_RS20985	0.56	-1.1
4,774,095	+		DDA3937_RS20985	0.56	+4.6
4,774,096	-		DDA3937_RS20985	0.56	-0.1
4,774,096	-		DDA3937_RS20985	0.56	+0.4
4,774,096	-		DDA3937_RS20985	0.56	-1.6
4,774,178	-		DDA3937_RS20985	0.68	+0.2
4,774,197	+		DDA3937_RS20985	0.71	-0.9
4,774,197	+		DDA3937_RS20985	0.71	-1.3
4,774,197	+		DDA3937_RS20985	0.71	-0.7
4,774,197	+		DDA3937_RS20985	0.71	+0.0
4,774,198	-		DDA3937_RS20985	0.71	-0.1