Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS20095

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,573,488	+		DDA3937_RS20090	0.70	-1.2
4,573,488	+		DDA3937_RS20090	0.70	-1.7
4,573,488	+		DDA3937_RS20090	0.70	+0.4
4,573,488	+		DDA3937_RS20090	0.70	+0.9
4,573,488	+		DDA3937_RS20090	0.70	+0.3
4,573,492	+		DDA3937_RS20090	0.70	+1.5
4,573,493	-		DDA3937_RS20090	0.70	-2.1
4,573,493	-		DDA3937_RS20090	0.70	-1.6
4,573,493	-		DDA3937_RS20090	0.70	-0.6
4,573,554	+		DDA3937_RS20090	0.73	-0.1
4,573,554	+		DDA3937_RS20090	0.73	+1.2
4,573,555	-		DDA3937_RS20090	0.73	+0.3
4,573,555	-		DDA3937_RS20090	0.73	-1.3
4,573,556	+		DDA3937_RS20090	0.73	+1.9
4,573,556	+		DDA3937_RS20090	0.73	+0.8
4,573,556	+		DDA3937_RS20090	0.73	+0.8
4,573,557	-		DDA3937_RS20090	0.73	+0.0
4,573,557	-		DDA3937_RS20090	0.73	-0.2
4,573,557	-		DDA3937_RS20090	0.73	-0.3
4,573,557	-		DDA3937_RS20090	0.73	-1.0
4,573,581	+		DDA3937_RS20090	0.75	+1.6
4,573,582	-		DDA3937_RS20090	0.75	-0.7
4,573,646	+		DDA3937_RS20090	0.78	-1.1
4,573,646	+		DDA3937_RS20090	0.78	+0.2
4,573,646	+		DDA3937_RS20090	0.78	-0.6
4,573,647	-		DDA3937_RS20090	0.78	-0.6
4,573,647	-		DDA3937_RS20090	0.78	-0.6
4,573,706	-		DDA3937_RS20090	0.82	+0.2
4,573,706	-		DDA3937_RS20090	0.82	+1.6
4,573,730	+		DDA3937_RS20090	0.83	+0.1
4,573,730	+		DDA3937_RS20090	0.83	-0.5
4,573,730	+		DDA3937_RS20090	0.83	-1.0
4,573,730	+		DDA3937_RS20090	0.83	-0.8
4,573,730	+		DDA3937_RS20090	0.83	+0.2
4,573,730	+		DDA3937_RS20090	0.83	-0.6
4,573,730	+		DDA3937_RS20090	0.83	-0.6
4,573,730	+		DDA3937_RS20090	0.83	-0.1
4,573,730	+				+1.9
4,573,730	+		DDA3937_RS20090	0.83	-0.4
4,573,730	+		DDA3937_RS20090	0.83	-0.4
4,573,730	+		DDA3937_RS20090	0.83	-0.8
4,573,730	+		DDA3937_RS20090	0.83	+0.1
4,573,730	+		DDA3937_RS20090	0.83	-0.6
4,573,730	+		DDA3937_RS20090	0.83	-0.7
4,573,730	+		DDA3937_RS20090	0.83	+0.4
4,573,731	-		DDA3937_RS20090	0.83	+0.3
4,573,731	-		DDA3937_RS20090	0.83	+1.2
4,573,731	-		DDA3937_RS20090	0.83	-0.1
4,573,731	-		DDA3937_RS20090	0.83	-0.8
4,573,731	-		DDA3937_RS20090	0.83	-0.1
4,573,731	-		DDA3937_RS20090	0.83	-0.3
4,573,731	-		DDA3937_RS20090	0.83	+1.3
4,573,731	-		DDA3937_RS20090	0.83	-0.7
4,573,731	-		DDA3937_RS20090	0.83	-2.0
4,573,731	-		DDA3937_RS20090	0.83	-2.3
4,573,731	-		DDA3937_RS20090	0.83	+0.0
4,573,731	-		DDA3937_RS20090	0.83	+6.6
4,573,731	-		DDA3937_RS20090	0.83	+0.3
4,573,731	-		DDA3937_RS20090	0.83	-0.2
4,573,732	+		DDA3937_RS20090	0.83	-0.3
4,573,732	+		DDA3937_RS20090	0.83	-2.0
4,573,732	+		DDA3937_RS20090	0.83	-0.7
4,573,732	+		DDA3937_RS20090	0.83	-0.5
4,573,732	+		DDA3937_RS20090	0.83	-0.0
4,573,732	+		DDA3937_RS20090	0.83	-1.0
4,573,732	+		DDA3937_RS20090	0.83	-1.1
4,573,732	+		DDA3937_RS20090	0.83	+0.2
4,573,732	+		DDA3937_RS20090	0.83	-0.6
4,573,733	-		DDA3937_RS20090	0.83	-0.1
4,573,733	-		DDA3937_RS20090	0.83	+1.0
4,573,733	-		DDA3937_RS20090	0.83	+0.2
4,573,733	-		DDA3937_RS20090	0.83	+0.3
4,573,733	-		DDA3937_RS20090	0.83	+0.4
4,573,734	+		DDA3937_RS20090	0.83	-1.0
4,573,734	+		DDA3937_RS20090	0.83	-0.7
4,573,735	-		DDA3937_RS20090	0.83	-1.2
4,573,735	-		DDA3937_RS20090	0.83	-1.6
4,573,735	-		DDA3937_RS20090	0.83	-0.3
4,573,748	+		DDA3937_RS20090	0.84	-1.3
4,573,748	+		DDA3937_RS20090	0.84	-1.6
4,573,749	-		DDA3937_RS20090	0.84	+0.3
4,573,808	+		DDA3937_RS20090	0.87	-1.4
4,573,808	+		DDA3937_RS20090	0.87	-0.2
4,573,808	+		DDA3937_RS20090	0.87	-0.3
4,573,808	+		DDA3937_RS20090	0.87	+0.8
4,573,809	-		DDA3937_RS20090	0.87	+0.5
4,573,809	-		DDA3937_RS20090	0.87	-1.1
4,573,826	+		DDA3937_RS20090	0.88	-0.5
4,573,836	+				+1.9
4,573,837	-		DDA3937_RS20090	0.89	-0.9
4,573,837	-		DDA3937_RS20090	0.89	+0.6
4,573,939	-				+0.0
4,573,942	-				-1.8
4,574,045	+				+0.3
4,574,051	+				+0.7
4,574,051	+				+0.4
4,574,051	+				-1.5
4,574,051	+				+1.0
4,574,051	+				+0.5
4,574,051	+				-1.0
4,574,052	-				-1.5
4,574,052	-				+0.1
4,574,052	-				-0.1
4,574,052	-				-0.5
4,574,081	-				-0.0
4,574,097	-				+0.5
4,574,097	-				-2.0
4,574,182	-				-0.9
4,574,182	-				+0.5
4,574,198	-				-0.6
4,574,198	-				-0.4
4,574,198	-				-1.1
4,574,198	-				-1.0
4,574,203	-				+0.2
4,574,203	-				-0.4
4,574,203	-				-1.0
4,574,203	-				+5.6
4,574,203	-				-0.7
4,574,204	+				-0.5
4,574,219	-				-0.2
4,574,219	-				-0.7
4,574,219	-				+1.6
4,574,219	-				+0.3
4,574,294	+				-0.7
4,574,294	+				+2.9
4,574,294	+				-1.6
4,574,294	+				-0.4
4,574,295	-				+1.9
4,574,295	-				+0.5
4,574,295	-				-1.1
4,574,362	+				-1.3
4,574,390	+				-0.6
4,574,394	+				-1.5
4,574,394	+				-1.0
4,574,463	+				-1.0
4,574,475	-				-1.3
4,574,475	-				+2.4
4,574,475	-				-0.5
4,574,500	+				-0.5
4,574,500	+				-0.6
4,574,501	-				+0.6
4,574,533	-				-1.1
4,574,572	-				-1.5
4,574,572	-				-1.1
4,574,572	-				-0.3
4,574,572	-				+0.1
4,574,574	+				-1.5
4,574,574	+				-0.1
4,574,575	-				-2.4
4,574,575	-				-1.5
4,574,596	+				-0.6
4,574,596	+				-1.3
4,574,596	+				-3.0
4,574,596	+				+2.1
4,574,597	-				-2.1
4,574,597	-				+0.9
4,574,597	-				-0.6
4,574,690	+		DDA3937_RS20095	0.15	-0.5
4,574,690	+		DDA3937_RS20095	0.15	-2.0
4,574,691	-		DDA3937_RS20095	0.15	+1.4
4,574,691	-		DDA3937_RS20095	0.15	+1.3
4,574,691	-		DDA3937_RS20095	0.15	-1.3
4,574,691	-		DDA3937_RS20095	0.15	-0.8
4,574,691	-		DDA3937_RS20095	0.15	-0.3
4,574,691	-		DDA3937_RS20095	0.15	+1.3
4,574,691	-		DDA3937_RS20095	0.15	+1.1
4,574,691	-		DDA3937_RS20095	0.15	-0.0
4,574,691	-		DDA3937_RS20095	0.15	-3.4
4,574,691	-		DDA3937_RS20095	0.15	-0.1
4,574,692	+		DDA3937_RS20095	0.15	+0.4
4,574,693	-		DDA3937_RS20095	0.15	-0.6
4,574,706	-		DDA3937_RS20095	0.16	-0.7
4,574,776	+		DDA3937_RS20095	0.20	+0.2
4,574,777	-		DDA3937_RS20095	0.20	-0.6
4,574,777	-		DDA3937_RS20095	0.20	-1.5
4,574,787	-		DDA3937_RS20095	0.20	-0.8
4,574,810	+		DDA3937_RS20095	0.21	-2.1
4,574,810	+		DDA3937_RS20095	0.21	+0.1
4,574,810	+		DDA3937_RS20095	0.21	-0.5
4,574,811	-		DDA3937_RS20095	0.21	-1.7
4,574,811	-		DDA3937_RS20095	0.21	+0.5
4,574,903	-		DDA3937_RS20095	0.27	+4.0
4,574,923	+		DDA3937_RS20095	0.28	-1.1
4,574,924	-		DDA3937_RS20095	0.28	-1.5
4,574,924	-		DDA3937_RS20095	0.28	+0.3
4,575,086	+		DDA3937_RS20095	0.37	+1.4
4,575,098	+		DDA3937_RS20095	0.37	-1.4
4,575,099	-		DDA3937_RS20095	0.37	-0.7
4,575,099	-		DDA3937_RS20095	0.37	-0.1
4,575,108	-		DDA3937_RS20095	0.38	-0.7
4,575,114	-		DDA3937_RS20095	0.38	+0.9
4,575,114	-		DDA3937_RS20095	0.38	+0.5
4,575,114	-		DDA3937_RS20095	0.38	-0.7
4,575,114	-		DDA3937_RS20095	0.38	+0.9
4,575,281	+		DDA3937_RS20095	0.47	-1.2
4,575,282	-		DDA3937_RS20095	0.47	+0.0
4,575,363	+		DDA3937_RS20095	0.52	+0.3
4,575,363	+		DDA3937_RS20095	0.52	-0.6
4,575,363	+		DDA3937_RS20095	0.52	-0.7
4,575,363	+		DDA3937_RS20095	0.52	-0.3
4,575,363	+		DDA3937_RS20095	0.52	-2.0
4,575,363	+		DDA3937_RS20095	0.52	-0.3
4,575,380	+		DDA3937_RS20095	0.53	-1.1
4,575,381	-		DDA3937_RS20095	0.53	+2.7
4,575,381	-		DDA3937_RS20095	0.53	+0.6
4,575,382	+		DDA3937_RS20095	0.53	-0.1
4,575,382	+		DDA3937_RS20095	0.53	-1.3
4,575,382	+		DDA3937_RS20095	0.53	-0.7
4,575,383	-		DDA3937_RS20095	0.53	-0.5
4,575,383	-		DDA3937_RS20095	0.53	-1.0
4,575,383	-		DDA3937_RS20095	0.53	+0.1
4,575,383	-		DDA3937_RS20095	0.53	-0.7
4,575,477	+		DDA3937_RS20095	0.58	-0.5
4,575,478	-		DDA3937_RS20095	0.58	+0.4
4,575,478	-		DDA3937_RS20095	0.58	-0.3
4,575,478	-		DDA3937_RS20095	0.58	-1.0
4,575,478	-		DDA3937_RS20095	0.58	+0.2
4,575,478	-		DDA3937_RS20095	0.58	-0.4
4,575,478	-		DDA3937_RS20095	0.58	-0.3
4,575,559	+		DDA3937_RS20095	0.63	-0.5
4,575,560	-		DDA3937_RS20095	0.63	-0.1
4,575,566	-		DDA3937_RS20095	0.63	+0.1
4,575,583	-		DDA3937_RS20095	0.64	+0.3
4,575,583	-		DDA3937_RS20095	0.64	-0.6
4,575,692	+		DDA3937_RS20095	0.70	-0.2
4,575,692	+		DDA3937_RS20095	0.70	+0.7
4,575,692	+		DDA3937_RS20095	0.70	-0.9
4,575,693	-		DDA3937_RS20095	0.70	-0.5
4,575,693	-		DDA3937_RS20095	0.70	+0.4
4,575,693	-		DDA3937_RS20095	0.70	+0.4
4,575,693	-		DDA3937_RS20095	0.70	+1.1
4,575,721	-		DDA3937_RS20095	0.71	+1.3
4,575,756	+		DDA3937_RS20095	0.73	-0.9
4,575,756	+		DDA3937_RS20095	0.73	+0.6
4,575,757	-		DDA3937_RS20095	0.73	+0.9
4,575,757	-		DDA3937_RS20095	0.73	-0.7
4,575,774	+		DDA3937_RS20095	0.74	+0.8
4,575,775	-		DDA3937_RS20095	0.74	-1.5
4,575,775	-		DDA3937_RS20095	0.74	+0.9
4,575,846	+		DDA3937_RS20095	0.78	-1.1
4,575,846	+		DDA3937_RS20095	0.78	-0.5
4,575,846	+		DDA3937_RS20095	0.78	+0.5
4,575,846	+		DDA3937_RS20095	0.78	-0.3
4,575,853	+		DDA3937_RS20095	0.79	-1.1
4,575,857	-		DDA3937_RS20095	0.79	+0.6
4,575,901	-		DDA3937_RS20095	0.81	-2.1
4,575,901	-				-0.1
4,576,049	-		DDA3937_RS20095	0.89	+1.2
4,576,049	-		DDA3937_RS20095	0.89	-0.4
4,576,049	-		DDA3937_RS20095	0.89	-1.1
4,576,058	-		DDA3937_RS20095	0.90	+0.8
4,576,246	-				-0.1
4,576,251	+				-0.5
4,576,252	-				-0.1
4,576,252	-				+0.6
4,576,252	-				-0.6
4,576,252	-				-0.5
4,576,252	-				-0.2
4,576,258	+				-0.7
4,576,275	-				-2.1
4,576,275	-				-0.9
4,576,280	+				+0.3
4,576,296	+				+0.3
4,576,297	-				-0.5
4,576,297	-				-1.5
4,576,370	-				-0.1
4,576,386	-				+1.9
4,576,391	-				-0.6
4,576,393	-				-0.3
4,576,393	-				-0.3
4,576,393	-				-0.9
4,576,393	-				-1.6
4,576,407	-				-1.6
4,576,407	-				+0.4
4,576,407	-				-0.4
4,576,482	-				+0.9
4,576,482	-				+0.9
4,576,513	+				+0.0
4,576,514	-				+0.3
4,576,574	+				-2.8
4,576,582	+				-0.4
4,576,593	+				+0.3
4,576,594	-				-1.5
4,576,651	+				+0.1
4,576,651	+				+0.3
4,576,651	+				-1.4
4,576,652	-				-0.1
4,576,652	-				-1.0
4,576,663	+				-0.7
4,576,663	+				-2.1
4,576,663	+				-1.2
4,576,663	+				-0.2
4,576,664	-				+0.1
4,576,664	-				-0.1
4,576,664	-				-0.7
4,576,664	-				+1.6
4,576,664	-				-1.1
4,576,667	+				-0.1
4,576,667	+				-0.4
4,576,667	+				-1.5
4,576,668	-				-0.9
4,576,668	-				+1.3
4,576,668	-				+2.2
4,576,670	+				-1.1
4,576,671	-				+0.4
4,576,671	-				-1.1
4,576,726	+				-1.0
4,576,726	+				-0.6
4,576,726	+				-1.1
4,576,727	-				+0.9
4,576,727	-				+0.4
4,576,727	-				-0.0
4,576,727	-				-0.7
4,576,727	-				-0.7
4,576,727	-				-0.4
4,576,731	+				-0.5
4,576,731	+				+0.6
4,576,731	+				+1.0
4,576,732	-				+0.3
4,576,732	-				+0.0
4,576,732	-				-1.7
4,576,732	-				-1.0
4,576,742	+				+0.5
4,576,743	-				+0.3
4,576,743	-				-0.6
4,576,743	-				-0.6
4,576,743	-				+2.0
4,576,804	-		DDA3937_RS20100	0.11	-1.0
4,576,847	+		DDA3937_RS20100	0.13	-2.0
4,576,847	+		DDA3937_RS20100	0.13	-0.5
4,576,863	-		DDA3937_RS20100	0.14	-1.0
4,576,863	-		DDA3937_RS20100	0.14	-0.2
4,576,869	+		DDA3937_RS20100	0.15	-0.7
4,576,869	+		DDA3937_RS20100	0.15	+0.5
4,576,869	+		DDA3937_RS20100	0.15	+1.2
4,576,869	+		DDA3937_RS20100	0.15	-1.5
4,576,869	+		DDA3937_RS20100	0.15	-0.2
4,576,870	-		DDA3937_RS20100	0.15	-0.7
4,576,870	-		DDA3937_RS20100	0.15	+0.9
4,576,870	-		DDA3937_RS20100	0.15	-1.9
4,576,870	-		DDA3937_RS20100	0.15	-0.9
4,576,870	-		DDA3937_RS20100	0.15	-1.4
4,576,874	+		DDA3937_RS20100	0.15	-0.7
4,576,874	+		DDA3937_RS20100	0.15	+0.7
4,576,874	+		DDA3937_RS20100	0.15	-0.3
4,576,874	+		DDA3937_RS20100	0.15	+0.3
4,576,874	+		DDA3937_RS20100	0.15	-0.3
4,576,875	-		DDA3937_RS20100	0.15	+0.2
4,576,875	-		DDA3937_RS20100	0.15	+1.2
4,576,924	+		DDA3937_RS20100	0.18	+0.5
4,576,924	+		DDA3937_RS20100	0.18	+0.4
4,576,978	+		DDA3937_RS20100	0.21	-0.7
4,576,989	+		DDA3937_RS20100	0.21	-0.6
4,576,989	+		DDA3937_RS20100	0.21	-0.8
4,576,990	-		DDA3937_RS20100	0.21	-1.5