Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19980

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,549,242	+				-1.0
4,549,243	-				-0.9
4,549,243	-				-1.0
4,549,243	-				-0.8
4,549,243	-				-0.2
4,549,301	-				-0.8
4,549,301	-				-1.2
4,549,301	-				-1.3
4,549,301	-				-0.4
4,549,312	+				-1.3
4,549,351	-				-0.4
4,549,409	+		DDA3937_RS19975	0.13	-0.6
4,549,409	+		DDA3937_RS19975	0.13	-1.0
4,549,410	-		DDA3937_RS19975	0.14	-0.8
4,549,478	+		DDA3937_RS19975	0.21	+0.6
4,549,478	+		DDA3937_RS19975	0.21	+0.6
4,549,478	+		DDA3937_RS19975	0.21	+0.1
4,549,478	+		DDA3937_RS19975	0.21	+0.4
4,549,479	-		DDA3937_RS19975	0.21	+0.7
4,549,479	-		DDA3937_RS19975	0.21	-0.1
4,549,479	-		DDA3937_RS19975	0.21	+1.5
4,549,479	-		DDA3937_RS19975	0.21	-1.5
4,549,479	-		DDA3937_RS19975	0.21	-1.1
4,549,479	-		DDA3937_RS19975	0.21	-0.3
4,549,479	-		DDA3937_RS19975	0.21	-1.5
4,549,542	+		DDA3937_RS19975	0.28	+1.0
4,549,543	-		DDA3937_RS19975	0.28	-0.7
4,549,545	+		DDA3937_RS19975	0.28	-0.6
4,549,546	-		DDA3937_RS19975	0.28	-0.6
4,549,588	-		DDA3937_RS19975	0.32	-1.0
4,549,710	+		DDA3937_RS19975	0.45	-0.3
4,549,710	+		DDA3937_RS19975	0.45	+0.0
4,549,711	-		DDA3937_RS19975	0.46	+0.4
4,549,720	-		DDA3937_RS19975	0.47	-1.0
4,549,766	-		DDA3937_RS19975	0.51	+0.5
4,549,766	-		DDA3937_RS19975	0.51	-1.3
4,549,799	+		DDA3937_RS19975	0.55	+0.5
4,549,799	+		DDA3937_RS19975	0.55	+2.3
4,549,800	-		DDA3937_RS19975	0.55	-0.9
4,549,800	-		DDA3937_RS19975	0.55	-2.1
4,549,800	-		DDA3937_RS19975	0.55	-1.0
4,549,800	-		DDA3937_RS19975	0.55	-0.4
4,549,800	-		DDA3937_RS19975	0.55	+0.5
4,549,800	-		DDA3937_RS19975	0.55	-0.7
4,549,800	-		DDA3937_RS19975	0.55	-0.2
4,549,868	+		DDA3937_RS19975	0.62	-1.7
4,549,868	+		DDA3937_RS19975	0.62	-1.0
4,549,868	+		DDA3937_RS19975	0.62	-1.0
4,549,868	+		DDA3937_RS19975	0.62	-1.1
4,549,868	+		DDA3937_RS19975	0.62	-1.3
4,549,868	+		DDA3937_RS19975	0.62	+0.3
4,549,868	+		DDA3937_RS19975	0.62	-0.1
4,549,869	-		DDA3937_RS19975	0.62	-0.1
4,549,869	-		DDA3937_RS19975	0.62	+0.6
4,549,869	-		DDA3937_RS19975	0.62	-0.1
4,549,869	-		DDA3937_RS19975	0.62	-0.5
4,549,869	-		DDA3937_RS19975	0.62	-0.3
4,549,869	-		DDA3937_RS19975	0.62	-1.6
4,549,869	-		DDA3937_RS19975	0.62	+0.1
4,549,870	+		DDA3937_RS19975	0.63	+1.0
4,549,871	-		DDA3937_RS19975	0.63	-1.3
4,549,871	-		DDA3937_RS19975	0.63	+0.0
4,549,871	-		DDA3937_RS19975	0.63	+0.6
4,549,873	+		DDA3937_RS19975	0.63	-1.2
4,549,873	+		DDA3937_RS19975	0.63	-0.2
4,549,873	+		DDA3937_RS19975	0.63	-1.1
4,549,873	+		DDA3937_RS19975	0.63	-1.1
4,549,873	+		DDA3937_RS19975	0.63	-0.7
4,549,873	+		DDA3937_RS19975	0.63	+0.5
4,549,873	+		DDA3937_RS19975	0.63	+0.3
4,549,873	+		DDA3937_RS19975	0.63	-0.2
4,549,873	+		DDA3937_RS19975	0.63	+2.0
4,549,873	+		DDA3937_RS19975	0.63	-0.5
4,549,873	+		DDA3937_RS19975	0.63	-0.5
4,549,873	+		DDA3937_RS19975	0.63	-0.0
4,549,873	+		DDA3937_RS19975	0.63	-1.4
4,549,873	+		DDA3937_RS19975	0.63	+1.3
4,549,873	+				+0.5
4,549,874	-		DDA3937_RS19975	0.63	-0.3
4,549,874	-		DDA3937_RS19975	0.63	-0.6
4,549,874	-		DDA3937_RS19975	0.63	+2.6
4,549,874	-		DDA3937_RS19975	0.63	-0.7
4,549,874	-		DDA3937_RS19975	0.63	-3.2
4,549,874	-		DDA3937_RS19975	0.63	-0.4
4,549,874	-		DDA3937_RS19975	0.63	+0.9
4,549,874	-		DDA3937_RS19975	0.63	-0.2
4,549,967	+		DDA3937_RS19975	0.73	-0.7
4,549,974	-		DDA3937_RS19975	0.74	-1.3
4,549,990	+		DDA3937_RS19975	0.75	-0.7
4,549,991	-		DDA3937_RS19975	0.75	-0.4
4,549,991	-				-0.7
4,549,991	-		DDA3937_RS19975	0.75	-0.7
4,549,991	-		DDA3937_RS19975	0.75	-0.1
4,549,991	-		DDA3937_RS19975	0.75	-0.6
4,549,991	-		DDA3937_RS19975	0.75	-0.2
4,549,991	-		DDA3937_RS19975	0.75	-1.0
4,550,024	+		DDA3937_RS19975	0.79	-0.6
4,550,024	+		DDA3937_RS19975	0.79	-0.6
4,550,024	+		DDA3937_RS19975	0.79	+5.5
4,550,024	+		DDA3937_RS19975	0.79	+0.0
4,550,024	+		DDA3937_RS19975	0.79	-2.1
4,550,024	+		DDA3937_RS19975	0.79	-0.8
4,550,025	-		DDA3937_RS19975	0.79	+0.2
4,550,025	-				+1.9
4,550,025	-				+1.9
4,550,025	-		DDA3937_RS19975	0.79	+0.1
4,550,025	-		DDA3937_RS19975	0.79	-0.6
4,550,025	-		DDA3937_RS19975	0.79	-1.2
4,550,027	+		DDA3937_RS19975	0.79	-1.7
4,550,027	+		DDA3937_RS19975	0.79	-0.2
4,550,027	+		DDA3937_RS19975	0.79	+0.5
4,550,027	+		DDA3937_RS19975	0.79	-1.6
4,550,027	+		DDA3937_RS19975	0.79	-1.8
4,550,027	+		DDA3937_RS19975	0.79	-0.4
4,550,027	+		DDA3937_RS19975	0.79	+0.2
4,550,028	-		DDA3937_RS19975	0.79	+0.2
4,550,028	-		DDA3937_RS19975	0.79	-0.8
4,550,028	-		DDA3937_RS19975	0.79	-1.2
4,550,028	-		DDA3937_RS19975	0.79	+0.4
4,550,028	-		DDA3937_RS19975	0.79	+0.2
4,550,111	+		DDA3937_RS19975	0.88	-0.7
4,550,111	+		DDA3937_RS19975	0.88	-1.6
4,550,111	+		DDA3937_RS19975	0.88	+0.3
4,550,111	+		DDA3937_RS19975	0.88	-0.5
4,550,111	+				+0.9
4,550,111	+		DDA3937_RS19975	0.88	+1.1
4,550,112	-		DDA3937_RS19975	0.88	-0.5
4,550,112	-		DDA3937_RS19975	0.88	+0.5
4,550,112	-		DDA3937_RS19975	0.88	+0.0
4,550,112	-		DDA3937_RS19975	0.88	-1.4
4,550,112	-		DDA3937_RS19975	0.88	-1.1
4,550,112	-		DDA3937_RS19975	0.88	+0.3
4,550,150	+				+0.3
4,550,150	+				-0.0
4,550,150	+				-1.3
4,550,151	-				-0.2
4,550,151	-				-0.7
4,550,151	-				+0.6
4,550,186	+				+1.7
4,550,186	+				-0.1
4,550,245	+				-0.7
4,550,245	+				+7.1
4,550,246	-				+0.1
4,550,296	+				+2.0
4,550,296	+				-0.3
4,550,297	-				+1.3
4,550,299	+				-1.0
4,550,299	+				-1.3
4,550,300	-				+1.0
4,550,523	+		DDA3937_RS19980	0.24	-1.3
4,550,551	+		DDA3937_RS19980	0.26	+2.5
4,550,575	+		DDA3937_RS19980	0.28	+0.9
4,550,575	+		DDA3937_RS19980	0.28	-0.1
4,550,683	+		DDA3937_RS19980	0.37	-1.0
4,550,683	+		DDA3937_RS19980	0.37	+1.9
4,550,683	+		DDA3937_RS19980	0.37	+0.3
4,550,683	+		DDA3937_RS19980	0.37	+0.4
4,550,692	+		DDA3937_RS19980	0.37	+0.7
4,550,693	-		DDA3937_RS19980	0.37	-1.8
4,550,770	-		DDA3937_RS19980	0.44	-1.2
4,550,776	-		DDA3937_RS19980	0.44	-1.3
4,550,904	+		DDA3937_RS19980	0.55	+0.2
4,550,904	+		DDA3937_RS19980	0.55	-1.7
4,550,904	+		DDA3937_RS19980	0.55	+0.1
4,550,905	-		DDA3937_RS19980	0.55	+1.0
4,550,905	-		DDA3937_RS19980	0.55	+0.4
4,550,905	-				+1.3
4,550,905	-		DDA3937_RS19980	0.55	-1.1
4,550,905	-		DDA3937_RS19980	0.55	-1.0
4,550,905	-		DDA3937_RS19980	0.55	-0.3
4,550,905	-		DDA3937_RS19980	0.55	+1.3
4,550,905	-		DDA3937_RS19980	0.55	-0.3
4,550,905	-		DDA3937_RS19980	0.55	-0.0
4,550,905	-		DDA3937_RS19980	0.55	-2.1
4,550,905	-		DDA3937_RS19980	0.55	-0.4
4,550,981	+		DDA3937_RS19980	0.61	-0.7
4,550,982	-		DDA3937_RS19980	0.61	+0.3
4,550,982	-				+0.9
4,550,982	-		DDA3937_RS19980	0.61	-0.1
4,550,982	-		DDA3937_RS19980	0.61	+0.4
4,551,093	-		DDA3937_RS19980	0.70	+0.5
4,551,095	+		DDA3937_RS19980	0.70	+0.2
4,551,095	+		DDA3937_RS19980	0.70	-0.0
4,551,095	+		DDA3937_RS19980	0.70	+0.7
4,551,096	-		DDA3937_RS19980	0.70	+1.7
4,551,096	-		DDA3937_RS19980	0.70	-0.7
4,551,096	-		DDA3937_RS19980	0.70	+0.0
4,551,096	-		DDA3937_RS19980	0.70	-1.5
4,551,096	-		DDA3937_RS19980	0.70	-0.4
4,551,100	+		DDA3937_RS19980	0.71	-0.5
4,551,101	-		DDA3937_RS19980	0.71	-0.1
4,551,101	-		DDA3937_RS19980	0.71	-0.5
4,551,127	+		DDA3937_RS19980	0.73	-1.9
4,551,153	+		DDA3937_RS19980	0.75	-0.2
4,551,163	+		DDA3937_RS19980	0.76	-2.0
4,551,163	+				+0.9
4,551,163	+		DDA3937_RS19980	0.76	+1.2
4,551,164	-		DDA3937_RS19980	0.76	-0.1
4,551,164	-		DDA3937_RS19980	0.76	+0.1
4,551,164	-		DDA3937_RS19980	0.76	-0.5
4,551,164	-		DDA3937_RS19980	0.76	+1.1
4,551,164	-		DDA3937_RS19980	0.76	-0.7
4,551,188	+		DDA3937_RS19980	0.78	+0.6
4,551,215	+		DDA3937_RS19980	0.80	+3.2
4,551,216	-		DDA3937_RS19980	0.80	-0.4
4,551,274	+		DDA3937_RS19980	0.85	-0.1
4,551,274	+		DDA3937_RS19980	0.85	+0.6
4,551,274	+		DDA3937_RS19980	0.85	+3.3
4,551,279	-		DDA3937_RS19980	0.85	-0.1
4,551,279	-		DDA3937_RS19980	0.85	+1.4
4,551,291	+		DDA3937_RS19980	0.86	+0.4
4,551,291	+		DDA3937_RS19980	0.86	-0.4
4,551,291	+		DDA3937_RS19980	0.86	+1.0
4,551,291	+		DDA3937_RS19980	0.86	-1.8
4,551,291	+		DDA3937_RS19980	0.86	-0.9
4,551,291	+		DDA3937_RS19980	0.86	+0.0
4,551,291	+		DDA3937_RS19980	0.86	-0.3
4,551,292	-		DDA3937_RS19980	0.86	-1.4
4,551,292	-		DDA3937_RS19980	0.86	-0.5
4,551,292	-		DDA3937_RS19980	0.86	+0.6
4,551,292	-		DDA3937_RS19980	0.86	+0.1
4,551,292	-		DDA3937_RS19980	0.86	-1.6
4,551,292	-		DDA3937_RS19980	0.86	-0.1
4,551,370	+				-0.7
4,551,370	+				+0.3
4,551,371	-				+1.6
4,551,371	-				-0.4
4,551,456	+				+0.1
4,551,457	-				-1.5
4,551,469	+				-0.1
4,551,493	+				+3.3
4,551,494	-				+1.4
4,551,667	+		DDA3937_RS19985	0.11	+0.3
4,551,735	+		DDA3937_RS19985	0.15	-0.7
4,551,735	+		DDA3937_RS19985	0.15	-1.5
4,551,735	+		DDA3937_RS19985	0.15	-1.5
4,551,736	-		DDA3937_RS19985	0.15	-0.1
4,551,812	-		DDA3937_RS19985	0.21	+1.4
4,551,812	-		DDA3937_RS19985	0.21	+0.1
4,551,873	+		DDA3937_RS19985	0.25	+0.0
4,551,873	+		DDA3937_RS19985	0.25	-1.3
4,551,873	+		DDA3937_RS19985	0.25	-1.4
4,551,874	-		DDA3937_RS19985	0.25	-0.7
4,551,874	-		DDA3937_RS19985	0.25	-0.3
4,551,874	-		DDA3937_RS19985	0.25	+0.7
4,551,879	+		DDA3937_RS19985	0.25	-0.4
4,551,879	+		DDA3937_RS19985	0.25	+0.2
4,551,879	+		DDA3937_RS19985	0.25	-0.6
4,551,880	-		DDA3937_RS19985	0.25	+0.4
4,551,880	-		DDA3937_RS19985	0.25	-0.6
4,551,880	-		DDA3937_RS19985	0.25	-2.1
4,551,880	-		DDA3937_RS19985	0.25	-0.6
4,551,880	-		DDA3937_RS19985	0.25	-0.1
4,551,880	-		DDA3937_RS19985	0.25	-3.3
4,551,880	-		DDA3937_RS19985	0.25	-0.8
4,551,880	-		DDA3937_RS19985	0.25	-1.2
4,551,904	+		DDA3937_RS19985	0.27	-0.3
4,551,905	-		DDA3937_RS19985	0.27	-0.2
4,551,905	-		DDA3937_RS19985	0.27	+0.5
4,551,905	-		DDA3937_RS19985	0.27	-0.3
4,551,905	-		DDA3937_RS19985	0.27	+0.1
4,551,905	-		DDA3937_RS19985	0.27	-1.3
4,551,905	-		DDA3937_RS19985	0.27	-1.9
4,551,952	-		DDA3937_RS19985	0.30	-0.1
4,552,231	+		DDA3937_RS19985	0.49	-0.0
4,552,346	+		DDA3937_RS19985	0.57	+0.0
4,552,449	+		DDA3937_RS19985	0.64	+0.1
4,552,450	-		DDA3937_RS19985	0.65	-2.1
4,552,455	+		DDA3937_RS19985	0.65	-0.5
4,552,455	+		DDA3937_RS19985	0.65	+0.3