Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS19885 and DDA3937_RS19890 overlap by 1 nucleotides DDA3937_RS19890 and DDA3937_RS19895 overlap by 4 nucleotides DDA3937_RS19895 and DDA3937_RS19900 overlap by 4 nucleotides DDA3937_RS19900 and DDA3937_RS19905 are separated by 88 nucleotides
DDA3937_RS19885: DDA3937_RS19885 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,530,888 to 4,531,604
_RS19885
DDA3937_RS19890: DDA3937_RS19890 - tyrosine recombinase XerC, at 4,531,604 to 4,532,512
_RS19890
DDA3937_RS19895: DDA3937_RS19895 - DUF484 domain-containing protein, at 4,532,509 to 4,533,210
_RS19895
DDA3937_RS19900: DDA3937_RS19900 - diaminopimelate epimerase, at 4,533,207 to 4,534,031
_RS19900
DDA3937_RS19905: DDA3937_RS19905 - lipoprotein, at 4,534,120 to 4,534,302
_RS19905
Position (kb) 4532
4533
4534 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4531.531 kb on + strand, within DDA3937_RS19885 at 4531.531 kb on + strand, within DDA3937_RS19885 at 4531.531 kb on + strand, within DDA3937_RS19885 at 4531.531 kb on + strand, within DDA3937_RS19885 at 4531.531 kb on + strand, within DDA3937_RS19885 at 4531.531 kb on + strand, within DDA3937_RS19885 at 4531.531 kb on + strand, within DDA3937_RS19885 at 4531.532 kb on - strand, within DDA3937_RS19885 at 4531.532 kb on - strand, within DDA3937_RS19885 at 4531.532 kb on - strand, within DDA3937_RS19885 at 4531.532 kb on - strand, within DDA3937_RS19885 at 4531.532 kb on - strand, within DDA3937_RS19885 at 4531.532 kb on - strand, within DDA3937_RS19885 at 4531.532 kb on - strand, within DDA3937_RS19885 at 4531.532 kb on - strand, within DDA3937_RS19885 at 4531.536 kb on - strand at 4531.536 kb on - strand at 4531.536 kb on - strand at 4531.536 kb on - strand at 4531.540 kb on + strand at 4531.540 kb on + strand at 4531.600 kb on + strand at 4531.600 kb on + strand at 4531.600 kb on + strand at 4531.600 kb on + strand at 4531.601 kb on - strand at 4531.612 kb on + strand at 4531.613 kb on - strand at 4531.613 kb on - strand at 4532.512 kb on + strand at 4532.512 kb on + strand at 4532.512 kb on + strand at 4532.513 kb on - strand at 4532.594 kb on + strand, within DDA3937_RS19895 at 4532.595 kb on - strand, within DDA3937_RS19895 at 4532.732 kb on + strand, within DDA3937_RS19895 at 4532.733 kb on - strand, within DDA3937_RS19895 at 4532.733 kb on - strand, within DDA3937_RS19895 at 4532.733 kb on - strand, within DDA3937_RS19895 at 4532.733 kb on - strand, within DDA3937_RS19895 at 4532.782 kb on - strand, within DDA3937_RS19895 at 4532.803 kb on - strand, within DDA3937_RS19895 at 4532.925 kb on + strand, within DDA3937_RS19895 at 4533.090 kb on + strand, within DDA3937_RS19895 at 4533.091 kb on - strand, within DDA3937_RS19895 at 4533.150 kb on - strand at 4533.150 kb on - strand at 4533.210 kb on + strand at 4533.210 kb on + strand at 4533.210 kb on + strand at 4533.210 kb on + strand at 4533.211 kb on - strand at 4533.211 kb on - strand at 4533.211 kb on - strand at 4533.211 kb on - strand at 4533.211 kb on - strand at 4533.211 kb on - strand at 4533.219 kb on - strand at 4534.205 kb on + strand, within DDA3937_RS19905
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,531,531 + DDA3937_RS19885 0.90 +0.9 4,531,531 + DDA3937_RS19885 0.90 -0.1 4,531,531 + DDA3937_RS19885 0.90 -1.3 4,531,531 + DDA3937_RS19885 0.90 -3.0 4,531,531 + DDA3937_RS19885 0.90 -0.5 4,531,531 + DDA3937_RS19885 0.90 +0.5 4,531,531 + DDA3937_RS19885 0.90 +0.3 4,531,532 - DDA3937_RS19885 0.90 -1.8 4,531,532 - DDA3937_RS19885 0.90 +3.8 4,531,532 - DDA3937_RS19885 0.90 +0.4 4,531,532 - DDA3937_RS19885 0.90 -0.1 4,531,532 - DDA3937_RS19885 0.90 -0.5 4,531,532 - DDA3937_RS19885 0.90 -1.4 4,531,532 - DDA3937_RS19885 0.90 -0.6 4,531,532 - DDA3937_RS19885 0.90 -0.7 4,531,536 - -0.5 4,531,536 - +1.7 4,531,536 - +0.5 4,531,536 - -1.4 4,531,540 + -1.0 4,531,540 + -0.8 4,531,600 + -0.9 4,531,600 + -1.1 4,531,600 + -1.5 4,531,600 + +1.5 4,531,601 - -1.9 4,531,612 + -0.6 4,531,613 - +0.3 4,531,613 - +0.1 4,532,512 + -1.0 4,532,512 + -2.0 4,532,512 + -2.0 4,532,513 - -0.6 4,532,594 + DDA3937_RS19895 0.12 +0.5 4,532,595 - DDA3937_RS19895 0.12 -0.1 4,532,732 + DDA3937_RS19895 0.32 -1.0 4,532,733 - DDA3937_RS19895 0.32 +0.1 4,532,733 - DDA3937_RS19895 0.32 +2.0 4,532,733 - DDA3937_RS19895 0.32 +0.2 4,532,733 - DDA3937_RS19895 0.32 +4.3 4,532,782 - DDA3937_RS19895 0.39 -0.5 4,532,803 - DDA3937_RS19895 0.42 +0.4 4,532,925 + DDA3937_RS19895 0.59 -0.5 4,533,090 + DDA3937_RS19895 0.83 -1.0 4,533,091 - DDA3937_RS19895 0.83 +0.3 4,533,150 - +0.0 4,533,150 - +0.4 4,533,210 + -1.6 4,533,210 + -1.1 4,533,210 + -1.6 4,533,210 + +2.6 4,533,211 - +0.5 4,533,211 - +1.0 4,533,211 - +0.7 4,533,211 - -0.5 4,533,211 - -1.8 4,533,211 - -1.8 4,533,219 - -0.4 4,534,205 + DDA3937_RS19905 0.46 -1.2
Or see this region's nucleotide sequence