Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19835

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS19830 and DDA3937_RS19835 are separated by 113 nucleotidesDDA3937_RS19835 and DDA3937_RS19840 are separated by 157 nucleotides DDA3937_RS19830: DDA3937_RS19830 - lysophospholipase L2, at 4,517,702 to 4,518,694 _RS19830 DDA3937_RS19835: DDA3937_RS19835 - homoserine/homoserine lactone efflux protein, at 4,518,808 to 4,519,428 _RS19835 DDA3937_RS19840: DDA3937_RS19840 - hypothetical protein, at 4,519,586 to 4,520,476 _RS19840 Position (kb) 4518 4519 4520Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 4517.918 kb on + strand, within DDA3937_RS19830at 4517.918 kb on + strand, within DDA3937_RS19830at 4517.918 kb on + strand, within DDA3937_RS19830at 4517.918 kb on + strand, within DDA3937_RS19830at 4517.919 kb on - strand, within DDA3937_RS19830at 4517.920 kb on + strand, within DDA3937_RS19830at 4517.920 kb on + strand, within DDA3937_RS19830at 4517.920 kb on + strand, within DDA3937_RS19830at 4517.920 kb on + strand, within DDA3937_RS19830at 4517.921 kb on - strand, within DDA3937_RS19830at 4517.921 kb on - strand, within DDA3937_RS19830at 4517.921 kb on - strand, within DDA3937_RS19830at 4517.921 kb on - strand, within DDA3937_RS19830at 4517.921 kb on - strand, within DDA3937_RS19830at 4517.921 kb on - strand, within DDA3937_RS19830at 4517.921 kb on - strand, within DDA3937_RS19830at 4517.921 kb on - strandat 4517.939 kb on + strand, within DDA3937_RS19830at 4517.939 kb on + strand, within DDA3937_RS19830at 4517.940 kb on - strand, within DDA3937_RS19830at 4517.940 kb on - strand, within DDA3937_RS19830at 4517.982 kb on + strand, within DDA3937_RS19830at 4517.982 kb on + strand, within DDA3937_RS19830at 4517.982 kb on + strandat 4517.982 kb on + strand, within DDA3937_RS19830at 4517.982 kb on + strand, within DDA3937_RS19830at 4517.982 kb on + strand, within DDA3937_RS19830at 4517.983 kb on - strand, within DDA3937_RS19830at 4517.983 kb on - strand, within DDA3937_RS19830at 4517.983 kb on - strand, within DDA3937_RS19830at 4518.021 kb on + strand, within DDA3937_RS19830at 4518.022 kb on - strand, within DDA3937_RS19830at 4518.114 kb on + strand, within DDA3937_RS19830at 4518.114 kb on + strand, within DDA3937_RS19830at 4518.114 kb on + strand, within DDA3937_RS19830at 4518.114 kb on + strand, within DDA3937_RS19830at 4518.114 kb on + strand, within DDA3937_RS19830at 4518.114 kb on + strand, within DDA3937_RS19830at 4518.114 kb on + strand, within DDA3937_RS19830at 4518.114 kb on + strand, within DDA3937_RS19830at 4518.114 kb on + strand, within DDA3937_RS19830at 4518.115 kb on - strand, within DDA3937_RS19830at 4518.115 kb on - strand, within DDA3937_RS19830at 4518.115 kb on - strand, within DDA3937_RS19830at 4518.117 kb on + strand, within DDA3937_RS19830at 4518.117 kb on + strandat 4518.117 kb on + strandat 4518.118 kb on - strand, within DDA3937_RS19830at 4518.118 kb on - strand, within DDA3937_RS19830at 4518.118 kb on - strand, within DDA3937_RS19830at 4518.304 kb on + strand, within DDA3937_RS19830at 4518.304 kb on + strand, within DDA3937_RS19830at 4518.304 kb on + strand, within DDA3937_RS19830at 4518.304 kb on + strand, within DDA3937_RS19830at 4518.307 kb on - strand, within DDA3937_RS19830at 4518.307 kb on - strand, within DDA3937_RS19830at 4518.357 kb on + strand, within DDA3937_RS19830at 4518.364 kb on + strand, within DDA3937_RS19830at 4518.365 kb on - strand, within DDA3937_RS19830at 4518.374 kb on - strand, within DDA3937_RS19830at 4518.374 kb on - strand, within DDA3937_RS19830at 4518.450 kb on + strand, within DDA3937_RS19830at 4518.471 kb on + strand, within DDA3937_RS19830at 4518.471 kb on + strand, within DDA3937_RS19830at 4518.472 kb on - strand, within DDA3937_RS19830at 4518.486 kb on + strand, within DDA3937_RS19830at 4518.487 kb on - strand, within DDA3937_RS19830at 4518.495 kb on + strand, within DDA3937_RS19830at 4518.496 kb on - strand, within DDA3937_RS19830at 4518.496 kb on - strand, within DDA3937_RS19830at 4518.496 kb on - strand, within DDA3937_RS19830at 4518.525 kb on - strand, within DDA3937_RS19830at 4518.525 kb on - strand, within DDA3937_RS19830at 4518.550 kb on + strand, within DDA3937_RS19830at 4518.627 kb on - strandat 4518.627 kb on - strandat 4518.651 kb on + strandat 4518.743 kb on + strandat 4518.744 kb on - strandat 4518.744 kb on - strandat 4518.744 kb on - strandat 4518.832 kb on + strandat 4518.832 kb on + strandat 4518.833 kb on - strandat 4518.833 kb on - strandat 4518.833 kb on - strandat 4518.833 kb on - strandat 4518.848 kb on + strandat 4518.848 kb on + strandat 4518.848 kb on + strandat 4518.848 kb on + strandat 4518.848 kb on + strandat 4518.848 kb on + strandat 4518.848 kb on + strandat 4518.849 kb on - strandat 4518.849 kb on - strandat 4518.960 kb on + strand, within DDA3937_RS19835at 4518.961 kb on - strand, within DDA3937_RS19835at 4518.961 kb on - strand, within DDA3937_RS19835at 4519.052 kb on - strand, within DDA3937_RS19835at 4519.122 kb on + strand, within DDA3937_RS19835at 4519.122 kb on + strand, within DDA3937_RS19835at 4519.122 kb on + strand, within DDA3937_RS19835at 4519.123 kb on - strand, within DDA3937_RS19835at 4519.123 kb on - strand, within DDA3937_RS19835at 4519.123 kb on - strand, within DDA3937_RS19835at 4519.123 kb on - strand, within DDA3937_RS19835at 4519.123 kb on - strand, within DDA3937_RS19835at 4519.215 kb on + strand, within DDA3937_RS19835at 4519.215 kb on + strand, within DDA3937_RS19835at 4519.216 kb on - strand, within DDA3937_RS19835at 4519.216 kb on - strand, within DDA3937_RS19835at 4519.246 kb on + strand, within DDA3937_RS19835at 4519.246 kb on + strand, within DDA3937_RS19835at 4519.246 kb on + strand, within DDA3937_RS19835at 4519.246 kb on + strand, within DDA3937_RS19835at 4519.247 kb on - strand, within DDA3937_RS19835at 4519.247 kb on - strand, within DDA3937_RS19835at 4519.247 kb on - strand, within DDA3937_RS19835at 4519.247 kb on - strand, within DDA3937_RS19835at 4519.301 kb on - strand, within DDA3937_RS19835at 4519.334 kb on + strand, within DDA3937_RS19835at 4519.335 kb on - strand, within DDA3937_RS19835at 4519.388 kb on + strandat 4519.388 kb on + strandat 4519.443 kb on - strandat 4519.443 kb on - strandat 4519.451 kb on - strandat 4519.451 kb on - strandat 4519.451 kb on - strandat 4519.451 kb on - strandat 4519.451 kb on - strandat 4519.546 kb on + strandat 4519.546 kb on + strandat 4519.547 kb on - strandat 4519.582 kb on + strandat 4519.584 kb on + strandat 4519.584 kb on + strandat 4519.590 kb on - strandat 4519.590 kb on - strandat 4519.603 kb on + strandat 4519.603 kb on + strandat 4519.603 kb on + strandat 4519.759 kb on - strand, within DDA3937_RS19840at 4519.840 kb on + strand, within DDA3937_RS19840at 4519.937 kb on + strand, within DDA3937_RS19840at 4519.937 kb on + strand, within DDA3937_RS19840at 4519.938 kb on - strand, within DDA3937_RS19840at 4519.946 kb on - strand, within DDA3937_RS19840at 4519.946 kb on - strand, within DDA3937_RS19840at 4519.948 kb on - strand, within DDA3937_RS19840at 4519.948 kb on - strand, within DDA3937_RS19840at 4520.039 kb on + strand, within DDA3937_RS19840at 4520.039 kb on + strand, within DDA3937_RS19840at 4520.039 kb on + strandat 4520.040 kb on - strand, within DDA3937_RS19840at 4520.085 kb on - strand, within DDA3937_RS19840at 4520.107 kb on + strand, within DDA3937_RS19840at 4520.107 kb on + strand, within DDA3937_RS19840at 4520.108 kb on - strand, within DDA3937_RS19840at 4520.108 kb on - strand, within DDA3937_RS19840at 4520.108 kb on - strand, within DDA3937_RS19840at 4520.174 kb on + strand, within DDA3937_RS19840at 4520.192 kb on + strand, within DDA3937_RS19840at 4520.196 kb on - strand, within DDA3937_RS19840at 4520.275 kb on + strand, within DDA3937_RS19840at 4520.282 kb on + strand, within DDA3937_RS19840at 4520.283 kb on - strand, within DDA3937_RS19840at 4520.301 kb on - strand, within DDA3937_RS19840

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,517,918 + DDA3937_RS19830 0.22 -0.5
4,517,918 + DDA3937_RS19830 0.22 -0.7
4,517,918 + DDA3937_RS19830 0.22 -1.7
4,517,918 + DDA3937_RS19830 0.22 -1.6
4,517,919 - DDA3937_RS19830 0.22 +0.5
4,517,920 + DDA3937_RS19830 0.22 -1.0
4,517,920 + DDA3937_RS19830 0.22 -0.3
4,517,920 + DDA3937_RS19830 0.22 +0.5
4,517,920 + DDA3937_RS19830 0.22 -0.5
4,517,921 - DDA3937_RS19830 0.22 -0.4
4,517,921 - DDA3937_RS19830 0.22 -0.8
4,517,921 - DDA3937_RS19830 0.22 -2.1
4,517,921 - DDA3937_RS19830 0.22 -0.7
4,517,921 - DDA3937_RS19830 0.22 -1.5
4,517,921 - DDA3937_RS19830 0.22 +0.3
4,517,921 - DDA3937_RS19830 0.22 -0.7
4,517,921 - +2.9
4,517,939 + DDA3937_RS19830 0.24 -0.6
4,517,939 + DDA3937_RS19830 0.24 +0.6
4,517,940 - DDA3937_RS19830 0.24 -1.6
4,517,940 - DDA3937_RS19830 0.24 -0.7
4,517,982 + DDA3937_RS19830 0.28 -1.1
4,517,982 + DDA3937_RS19830 0.28 -0.3
4,517,982 + -0.5
4,517,982 + DDA3937_RS19830 0.28 -0.8
4,517,982 + DDA3937_RS19830 0.28 -0.7
4,517,982 + DDA3937_RS19830 0.28 +0.5
4,517,983 - DDA3937_RS19830 0.28 -0.5
4,517,983 - DDA3937_RS19830 0.28 +0.3
4,517,983 - DDA3937_RS19830 0.28 -1.0
4,518,021 + DDA3937_RS19830 0.32 -0.2
4,518,022 - DDA3937_RS19830 0.32 -3.6
4,518,114 + DDA3937_RS19830 0.41 +0.3
4,518,114 + DDA3937_RS19830 0.41 -0.7
4,518,114 + DDA3937_RS19830 0.41 +0.6
4,518,114 + DDA3937_RS19830 0.41 +0.6
4,518,114 + DDA3937_RS19830 0.41 -1.5
4,518,114 + DDA3937_RS19830 0.41 +4.5
4,518,114 + DDA3937_RS19830 0.41 -2.1
4,518,114 + DDA3937_RS19830 0.41 -0.4
4,518,114 + DDA3937_RS19830 0.41 -1.1
4,518,115 - DDA3937_RS19830 0.42 -1.0
4,518,115 - DDA3937_RS19830 0.42 -0.4
4,518,115 - DDA3937_RS19830 0.42 +1.3
4,518,117 + DDA3937_RS19830 0.42 -0.7
4,518,117 + +1.9
4,518,117 + +2.2
4,518,118 - DDA3937_RS19830 0.42 -0.1
4,518,118 - DDA3937_RS19830 0.42 -0.6
4,518,118 - DDA3937_RS19830 0.42 -0.1
4,518,304 + DDA3937_RS19830 0.61 -1.2
4,518,304 + DDA3937_RS19830 0.61 +0.9
4,518,304 + DDA3937_RS19830 0.61 -1.8
4,518,304 + DDA3937_RS19830 0.61 +0.9
4,518,307 - DDA3937_RS19830 0.61 -1.5
4,518,307 - DDA3937_RS19830 0.61 -0.5
4,518,357 + DDA3937_RS19830 0.66 -0.6
4,518,364 + DDA3937_RS19830 0.67 -0.2
4,518,365 - DDA3937_RS19830 0.67 -2.4
4,518,374 - DDA3937_RS19830 0.68 +0.9
4,518,374 - DDA3937_RS19830 0.68 -2.1
4,518,450 + DDA3937_RS19830 0.75 -0.8
4,518,471 + DDA3937_RS19830 0.77 +0.6
4,518,471 + DDA3937_RS19830 0.77 +1.5
4,518,472 - DDA3937_RS19830 0.78 +0.3
4,518,486 + DDA3937_RS19830 0.79 -0.4
4,518,487 - DDA3937_RS19830 0.79 -0.8
4,518,495 + DDA3937_RS19830 0.80 -0.6
4,518,496 - DDA3937_RS19830 0.80 -1.5
4,518,496 - DDA3937_RS19830 0.80 -0.8
4,518,496 - DDA3937_RS19830 0.80 -0.6
4,518,525 - DDA3937_RS19830 0.83 +1.6
4,518,525 - DDA3937_RS19830 0.83 -2.1
4,518,550 + DDA3937_RS19830 0.85 -1.4
4,518,627 - +0.3
4,518,627 - -2.4
4,518,651 + -0.7
4,518,743 + -1.2
4,518,744 - +3.0
4,518,744 - -1.1
4,518,744 - +1.3
4,518,832 + -1.4
4,518,832 + -0.0
4,518,833 - +0.3
4,518,833 - -0.5
4,518,833 - +1.5
4,518,833 - -1.0
4,518,848 + -0.1
4,518,848 + +0.5
4,518,848 + -0.8
4,518,848 + +1.9
4,518,848 + -0.9
4,518,848 + -0.8
4,518,848 + -1.0
4,518,849 - -0.1
4,518,849 - -0.7
4,518,960 + DDA3937_RS19835 0.24 -0.3
4,518,961 - DDA3937_RS19835 0.25 -0.8
4,518,961 - DDA3937_RS19835 0.25 -0.4
4,519,052 - DDA3937_RS19835 0.39 -1.3
4,519,122 + DDA3937_RS19835 0.51 +0.2
4,519,122 + DDA3937_RS19835 0.51 -0.9
4,519,122 + DDA3937_RS19835 0.51 -0.3
4,519,123 - DDA3937_RS19835 0.51 -0.9
4,519,123 - DDA3937_RS19835 0.51 -0.1
4,519,123 - DDA3937_RS19835 0.51 -0.7
4,519,123 - DDA3937_RS19835 0.51 +3.0
4,519,123 - DDA3937_RS19835 0.51 -0.1
4,519,215 + DDA3937_RS19835 0.66 -1.0
4,519,215 + DDA3937_RS19835 0.66 -0.4
4,519,216 - DDA3937_RS19835 0.66 -0.7
4,519,216 - DDA3937_RS19835 0.66 +1.3
4,519,246 + DDA3937_RS19835 0.71 +7.1
4,519,246 + DDA3937_RS19835 0.71 +4.1
4,519,246 + DDA3937_RS19835 0.71 +2.0
4,519,246 + DDA3937_RS19835 0.71 +1.0
4,519,247 - DDA3937_RS19835 0.71 +0.1
4,519,247 - DDA3937_RS19835 0.71 +0.0
4,519,247 - DDA3937_RS19835 0.71 +0.9
4,519,247 - DDA3937_RS19835 0.71 +0.3
4,519,301 - DDA3937_RS19835 0.79 -1.1
4,519,334 + DDA3937_RS19835 0.85 -1.3
4,519,335 - DDA3937_RS19835 0.85 -1.1
4,519,388 + -1.0
4,519,388 + -0.4
4,519,443 - -1.7
4,519,443 - -1.2
4,519,451 - -0.1
4,519,451 - +0.0
4,519,451 - -2.0
4,519,451 - -0.1
4,519,451 - +0.9
4,519,546 + -1.3
4,519,546 + -0.7
4,519,547 - -1.3
4,519,582 + +0.1
4,519,584 + -1.6
4,519,584 + -2.1
4,519,590 - +0.2
4,519,590 - +0.9
4,519,603 + -1.1
4,519,603 + +1.0
4,519,603 + -1.6
4,519,759 - DDA3937_RS19840 0.19 -0.6
4,519,840 + DDA3937_RS19840 0.29 +0.9
4,519,937 + DDA3937_RS19840 0.39 -0.7
4,519,937 + DDA3937_RS19840 0.39 +0.4
4,519,938 - DDA3937_RS19840 0.40 -2.1
4,519,946 - DDA3937_RS19840 0.40 +1.2
4,519,946 - DDA3937_RS19840 0.40 +0.9
4,519,948 - DDA3937_RS19840 0.41 +0.0
4,519,948 - DDA3937_RS19840 0.41 +1.3
4,520,039 + DDA3937_RS19840 0.51 -2.1
4,520,039 + DDA3937_RS19840 0.51 +0.7
4,520,039 + +2.4
4,520,040 - DDA3937_RS19840 0.51 +1.6
4,520,085 - DDA3937_RS19840 0.56 -2.1
4,520,107 + DDA3937_RS19840 0.58 -1.3
4,520,107 + DDA3937_RS19840 0.58 -0.2
4,520,108 - DDA3937_RS19840 0.59 -0.1
4,520,108 - DDA3937_RS19840 0.59 +1.9
4,520,108 - DDA3937_RS19840 0.59 +1.1
4,520,174 + DDA3937_RS19840 0.66 +0.8
4,520,192 + DDA3937_RS19840 0.68 -0.8
4,520,196 - DDA3937_RS19840 0.68 +0.4
4,520,275 + DDA3937_RS19840 0.77 -1.3
4,520,282 + DDA3937_RS19840 0.78 -1.0
4,520,283 - DDA3937_RS19840 0.78 -1.0
4,520,301 - DDA3937_RS19840 0.80 +0.2

Or see this region's nucleotide sequence