Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19755

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,499,182	+		DDA3937_RS19750	0.54	+0.0
4,499,182	+		DDA3937_RS19750	0.54	-0.5
4,499,183	-		DDA3937_RS19750	0.54	-2.5
4,499,252	+		DDA3937_RS19750	0.58	+0.2
4,499,252	+		DDA3937_RS19750	0.58	-0.2
4,499,252	+		DDA3937_RS19750	0.58	-0.3
4,499,252	+		DDA3937_RS19750	0.58	+1.5
4,499,253	-		DDA3937_RS19750	0.59	+0.9
4,499,253	-		DDA3937_RS19750	0.59	-0.1
4,499,388	+		DDA3937_RS19750	0.67	+0.5
4,499,388	+		DDA3937_RS19750	0.67	-0.5
4,499,388	+		DDA3937_RS19750	0.67	-1.6
4,499,388	+		DDA3937_RS19750	0.67	-2.2
4,499,389	-		DDA3937_RS19750	0.67	+1.7
4,499,389	-		DDA3937_RS19750	0.67	-1.2
4,499,729	+				+0.3
4,499,729	+		DDA3937_RS19750	0.87	-0.5
4,499,799	-				-0.7
4,499,799	-				-0.4
4,499,831	-				+0.5
4,499,876	+				+1.3
4,499,877	-				-0.6
4,499,948	+				+0.5
4,499,957	-				+1.0
4,499,980	+				-1.1
4,499,980	+				+1.9
4,499,980	+				-0.8
4,499,980	+				+0.9
4,499,980	+				+0.6
4,499,980	+				-1.4
4,499,981	-				-0.5
4,499,981	-				-0.7
4,499,981	-				-0.5
4,499,981	-				-0.8
4,499,986	-				+0.1
4,500,038	+				-0.1
4,500,047	+				-0.4
4,500,047	+				+0.3
4,500,094	-				-0.1
4,500,113	-				+0.7
4,500,115	+				+0.0
4,500,115	+				-0.1
4,500,115	+				-2.9
4,500,115	+				-1.6
4,500,116	-				+3.4
4,500,116	-				-2.7
4,500,189	+				-0.8
4,500,189	+				-1.1
4,500,190	-				-0.1
4,500,192	+				-1.7
4,500,192	+				+0.6
4,500,192	+				-0.9
4,500,192	+				-0.5
4,500,193	-				+0.9
4,500,256	+		DDA3937_RS19755	0.36	+0.3
4,500,257	-		DDA3937_RS19755	0.36	+0.4
4,500,367	-		DDA3937_RS19755	0.88	-1.6
4,500,367	-		DDA3937_RS19755	0.88	+3.5
4,500,383	+				+0.2
4,500,383	+				+0.5
4,500,393	+				+0.1
4,500,393	+				+0.3
4,500,393	+				+0.6
4,500,393	+				+1.0
4,500,393	+				-0.5
4,500,393	+				-0.1
4,500,393	+				-1.1
4,500,393	+				-0.0
4,500,393	+				+0.4
4,500,394	-				+0.4
4,500,394	-				-0.7
4,500,394	-				+0.7
4,500,394	-				-0.7
4,500,394	-				+0.2
4,500,394	-				-1.7
4,500,394	-				-0.7
4,500,395	+				-0.1
4,500,395	+				+0.2
4,500,395	+				-0.5
4,500,395	+				-0.7
4,500,395	+				-0.1
4,500,396	-				+2.4
4,500,396	-				-0.0
4,500,396	-				-0.5
4,500,396	-				-0.4
4,500,396	-				+0.3
4,500,396	-				+0.2
4,500,398	+				-1.1
4,500,398	+				-2.2
4,500,399	-				-1.5
4,500,433	+				-2.0
4,500,435	+				-0.4
4,500,435	+				-1.0
4,500,435	+				+0.9
4,500,435	+				-0.3
4,500,435	+				+3.1
4,500,435	+				-0.5
4,500,435	+				-0.2
4,500,435	+				+0.4
4,500,435	+				-1.1
4,500,435	+				-0.2
4,500,435	+				-0.7
4,500,435	+				+0.7
4,500,435	+				-0.5
4,500,435	+				+1.3
4,500,435	+				-1.0
4,500,435	+				-0.3
4,500,435	+				-0.4
4,500,435	+				-2.4
4,500,435	+				-0.1
4,500,436	-				+0.9
4,500,436	-				-0.4
4,500,436	-				-0.9
4,500,436	-				-1.4
4,500,436	-				-2.2
4,500,436	-				+0.3
4,500,436	-				+0.0
4,500,436	-				+0.4
4,500,436	-				+0.4
4,500,436	-				+1.3
4,500,439	+				+0.1
4,500,439	+				+0.6
4,500,439	+				-1.0
4,500,439	+				-0.6
4,500,439	+				-0.1
4,500,439	+				+0.4
4,500,439	+				-0.3
4,500,439	+				-0.4
4,500,439	+				+0.1
4,500,440	-				-0.2
4,500,440	-				-2.1
4,500,440	-				+0.1
4,500,440	-				+0.6
4,500,440	-				-3.1
4,500,440	-				+0.4
4,500,440	-				-0.3
4,500,440	-				+0.5
4,500,440	-				-0.1
4,500,440	-				+0.8
4,500,440	-				-0.3
4,500,455	+				-0.4
4,500,456	-				-0.9
4,500,456	-				-2.7
4,500,456	-				-1.6
4,500,459	+				+2.1
4,500,459	+				-0.6
4,500,459	+				-0.4
4,500,460	-				+0.3
4,500,494	+				-1.9
4,500,528	-				-1.1
4,500,544	+				+2.3
4,500,545	-				-2.0
4,500,548	+				-0.5
4,500,548	+				-1.3
4,500,548	+				+0.3
4,500,549	-				+0.7
4,500,549	-				-0.7
4,500,574	+				-0.2
4,500,608	+				+2.8
4,500,608	+				+0.2
4,500,609	-				+0.1
4,500,612	+				-0.1
4,500,612	+				+1.0
4,500,613	-				-0.6
4,500,613	-				+0.9
4,500,613	-				-1.1
4,500,648	-				+1.2
4,500,655	-				-0.8
4,500,774	+				-0.3
4,500,775	-				-1.5
4,500,775	-				-2.5
4,500,775	-				-0.5
4,500,775	-				-1.8
4,500,884	+		DDA3937_RS19760	0.25	+0.9
4,500,885	-		DDA3937_RS19760	0.26	-2.2
4,500,946	+		DDA3937_RS19760	0.39	-0.8
4,500,946	+		DDA3937_RS19760	0.39	-0.9
4,500,946	+		DDA3937_RS19760	0.39	+1.3
4,500,947	-		DDA3937_RS19760	0.40	+1.0
4,501,029	+		DDA3937_RS19760	0.58	+0.9
4,501,030	-		DDA3937_RS19760	0.59	-1.9
4,501,030	-		DDA3937_RS19760	0.59	-0.5
4,501,030	-		DDA3937_RS19760	0.59	-0.5
4,501,030	-		DDA3937_RS19760	0.59	-1.3
4,501,035	+		DDA3937_RS19760	0.60	-2.1
4,501,035	+		DDA3937_RS19760	0.60	+2.1
4,501,035	+		DDA3937_RS19760	0.60	-0.7
4,501,035	+		DDA3937_RS19760	0.60	+2.2
4,501,035	+		DDA3937_RS19760	0.60	+0.6
4,501,035	+		DDA3937_RS19760	0.60	-0.1
4,501,035	+		DDA3937_RS19760	0.60	-1.0
4,501,036	-		DDA3937_RS19760	0.60	-0.5
4,501,036	-		DDA3937_RS19760	0.60	-1.0
4,501,036	-		DDA3937_RS19760	0.60	-0.1
4,501,036	-		DDA3937_RS19760	0.60	-2.5
4,501,036	-		DDA3937_RS19760	0.60	-1.5
4,501,036	-		DDA3937_RS19760	0.60	-0.1
4,501,067	-		DDA3937_RS19760	0.67	-0.7
4,501,067	-		DDA3937_RS19760	0.67	+0.1
4,501,103	+		DDA3937_RS19760	0.75	-0.4
4,501,137	+		DDA3937_RS19760	0.83	-1.7
4,501,269	-				-0.1
4,501,280	-				-0.5
4,501,308	-				-0.1
4,501,351	+				-0.0