Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS19390

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,408,518	-				+1.1
4,408,537	+				+0.2
4,408,563	+				-0.2
4,408,563	+				+2.0
4,408,563	+				+1.6
4,408,563	+				+0.8
4,408,563	+				+0.3
4,408,564	-				-1.5
4,408,564	-				-1.6
4,408,564	-				+0.2
4,408,564	-				+1.0
4,408,564	-				-1.4
4,408,564	-				+0.5
4,408,564	-				-0.4
4,408,565	+				-0.9
4,408,565	+				+0.8
4,408,565	+				+2.0
4,408,565	+				+0.6
4,408,588	-		DDA3937_RS23450	0.16	-0.5
4,408,677	+		DDA3937_RS23450	0.70	-0.2
4,408,677	+		DDA3937_RS23450	0.70	-2.9
4,408,678	-		DDA3937_RS23450	0.70	-0.6
4,408,678	-		DDA3937_RS23450	0.70	-0.5
4,408,759	+				-1.3
4,408,759	+				+0.9
4,408,760	-				-0.1
4,408,760	-				-0.3
4,408,760	-				-0.2
4,408,790	+				-1.8
4,408,790	+				-0.8
4,408,790	+				-0.9
4,408,791	-				+0.2
4,408,794	-				+0.3
4,408,943	-				+1.5
4,409,063	+				+0.0
4,409,063	+				-1.3
4,409,074	+				-0.7
4,409,074	+				+0.0
4,409,075	-				-1.3
4,409,075	-				+1.2
4,409,075	-				-0.2
4,409,083	-				+0.3
4,409,083	-				+0.8
4,409,108	+				+1.5
4,409,145	+				+0.8
4,409,145	+				-0.2
4,409,178	+				-0.6
4,409,178	+				-2.2
4,409,179	-				+0.1
4,409,179	-				-0.1
4,409,183	-				-2.5
4,409,320	-				+2.4
4,409,330	+				-0.8
4,409,331	-				+1.8
4,409,331	-				+1.8
4,409,336	+				-0.5
4,409,447	+				-1.2
4,409,448	-				-1.9
4,409,463	+				+1.8
4,409,464	-				+2.5
4,409,472	+				-0.7
4,409,664	+		DDA3937_RS19390	0.18	-1.2
4,409,678	+		DDA3937_RS19390	0.19	+0.8
4,409,678	+		DDA3937_RS19390	0.19	-0.2
4,409,679	-		DDA3937_RS19390	0.19	+0.1
4,409,679	-		DDA3937_RS19390	0.19	-0.5
4,409,757	+		DDA3937_RS19390	0.26	-0.1
4,409,758	-		DDA3937_RS19390	0.26	-0.6
4,409,758	-		DDA3937_RS19390	0.26	-1.3
4,409,818	+		DDA3937_RS19390	0.30	+0.2
4,409,818	+		DDA3937_RS19390	0.30	-2.3
4,409,818	+		DDA3937_RS19390	0.30	+1.8
4,409,818	+		DDA3937_RS19390	0.30	+0.8
4,409,818	+		DDA3937_RS19390	0.30	+0.0
4,409,818	+		DDA3937_RS19390	0.30	+0.3
4,409,818	+		DDA3937_RS19390	0.30	+0.1
4,409,819	-		DDA3937_RS19390	0.31	-0.8
4,409,819	-		DDA3937_RS19390	0.31	+0.5
4,409,819	-		DDA3937_RS19390	0.31	+2.8
4,409,819	-		DDA3937_RS19390	0.31	+0.3
4,409,819	-		DDA3937_RS19390	0.31	-1.3
4,409,819	-		DDA3937_RS19390	0.31	-1.1
4,409,819	-		DDA3937_RS19390	0.31	-0.6
4,409,819	-		DDA3937_RS19390	0.31	-0.7
4,409,819	-		DDA3937_RS19390	0.31	+0.8
4,409,819	-		DDA3937_RS19390	0.31	-1.2
4,409,819	-		DDA3937_RS19390	0.31	+1.0
4,409,819	-		DDA3937_RS19390	0.31	+0.5
4,409,820	+		DDA3937_RS19390	0.31	-0.7
4,409,820	+		DDA3937_RS19390	0.31	-0.1
4,409,820	+		DDA3937_RS19390	0.31	-1.3
4,409,820	+		DDA3937_RS19390	0.31	+0.6
4,409,820	+		DDA3937_RS19390	0.31	-0.3
4,409,820	+		DDA3937_RS19390	0.31	-0.0
4,409,820	+		DDA3937_RS19390	0.31	-0.3
4,409,820	+		DDA3937_RS19390	0.31	+0.7
4,409,820	+		DDA3937_RS19390	0.31	-0.9
4,409,820	+		DDA3937_RS19390	0.31	-0.8
4,409,820	+		DDA3937_RS19390	0.31	-0.6
4,409,820	+		DDA3937_RS19390	0.31	+1.2
4,409,820	+		DDA3937_RS19390	0.31	-0.1
4,409,820	+		DDA3937_RS19390	0.31	-0.5
4,409,821	-		DDA3937_RS19390	0.31	+1.1
4,409,821	-		DDA3937_RS19390	0.31	-1.7
4,409,821	-				+0.2
4,409,821	-		DDA3937_RS19390	0.31	+0.9
4,409,821	-		DDA3937_RS19390	0.31	-1.3
4,409,821	-		DDA3937_RS19390	0.31	-1.4
4,409,821	-		DDA3937_RS19390	0.31	+0.7
4,409,821	-		DDA3937_RS19390	0.31	+2.1
4,409,821	-		DDA3937_RS19390	0.31	+0.2
4,409,821	-		DDA3937_RS19390	0.31	+2.1
4,409,821	-				-0.2
4,409,821	-		DDA3937_RS19390	0.31	+0.2
4,409,827	+		DDA3937_RS19390	0.31	+0.0
4,409,828	-		DDA3937_RS19390	0.31	-1.3
4,409,900	+		DDA3937_RS19390	0.37	+1.5
4,409,901	-		DDA3937_RS19390	0.37	-0.2
4,409,901	-		DDA3937_RS19390	0.37	-1.7
4,409,901	-		DDA3937_RS19390	0.37	+0.2
4,409,905	+		DDA3937_RS19390	0.37	+0.0
4,409,905	+		DDA3937_RS19390	0.37	-1.3
4,410,036	-		DDA3937_RS19390	0.48	-0.0
4,410,112	+		DDA3937_RS19390	0.54	+5.6
4,410,113	-		DDA3937_RS19390	0.54	-1.3
4,410,270	-		DDA3937_RS19390	0.67	+1.4
4,410,358	+		DDA3937_RS19390	0.74	-2.3
4,410,358	+		DDA3937_RS19390	0.74	-0.1
4,410,358	+		DDA3937_RS19390	0.74	+1.2
4,410,359	-		DDA3937_RS19390	0.74	+0.2
4,410,359	-		DDA3937_RS19390	0.74	+4.0
4,410,359	-		DDA3937_RS19390	0.74	-2.1
4,410,361	+		DDA3937_RS19390	0.74	+0.8
4,410,362	-		DDA3937_RS19390	0.74	-1.5
4,410,362	-		DDA3937_RS19390	0.74	+1.3
4,410,362	-		DDA3937_RS19390	0.74	-0.1
4,410,445	+		DDA3937_RS19390	0.81	-1.9
4,410,445	+		DDA3937_RS19390	0.81	-0.2
4,410,445	+		DDA3937_RS19390	0.81	-0.9
4,410,445	+		DDA3937_RS19390	0.81	-0.8
4,410,446	-		DDA3937_RS19390	0.81	-0.3
4,410,469	+		DDA3937_RS19390	0.82	-2.3
4,410,469	+		DDA3937_RS19390	0.82	+0.8
4,410,469	+		DDA3937_RS19390	0.82	-0.2
4,410,469	+		DDA3937_RS19390	0.82	-1.3
4,410,469	+		DDA3937_RS19390	0.82	-2.4
4,410,469	+		DDA3937_RS19390	0.82	-0.2
4,410,469	+		DDA3937_RS19390	0.82	-2.4
4,410,469	+		DDA3937_RS19390	0.82	-0.8
4,410,470	-		DDA3937_RS19390	0.83	+1.8
4,410,470	-		DDA3937_RS19390	0.83	-1.8
4,410,470	-		DDA3937_RS19390	0.83	-3.0
4,410,470	-				-0.5
4,410,470	-		DDA3937_RS19390	0.83	-0.1
4,410,470	-		DDA3937_RS19390	0.83	+0.1
4,410,470	-		DDA3937_RS19390	0.83	-0.6
4,410,498	-		DDA3937_RS19390	0.85	-0.8
4,410,669	+				+0.6
4,410,670	-				-0.8
4,410,714	+				+0.4
4,410,714	+				+0.2
4,410,714	+				+1.4
4,410,715	-				+0.2
4,410,715	-				+0.1
4,410,717	+				-0.4
4,410,718	-				-1.1
4,410,895	+		DDA3937_RS19395	0.23	-1.7
4,410,895	+		DDA3937_RS19395	0.23	+0.7
4,410,895	+		DDA3937_RS19395	0.23	-1.3
4,410,895	+		DDA3937_RS19395	0.23	-0.3
4,410,937	-		DDA3937_RS19395	0.30	-3.6
4,411,139	+		DDA3937_RS19395	0.64	-0.1
4,411,139	+		DDA3937_RS19395	0.64	-1.4
4,411,139	+		DDA3937_RS19395	0.64	+0.8
4,411,140	-		DDA3937_RS19395	0.64	-1.9
4,411,149	-		DDA3937_RS19395	0.66	-1.2
4,411,250	+		DDA3937_RS19395	0.83	-1.6
4,411,250	+		DDA3937_RS19395	0.83	-0.6
4,411,251	-		DDA3937_RS19395	0.83	-0.2
4,411,251	-		DDA3937_RS19395	0.83	-1.9
4,411,251	-		DDA3937_RS19395	0.83	-0.8
4,411,288	+		DDA3937_RS19395	0.89	+0.3
4,411,288	+		DDA3937_RS19395	0.89	-2.1
4,411,288	+		DDA3937_RS19395	0.89	-0.3
4,411,289	-		DDA3937_RS19395	0.90	+0.5
4,411,302	+				-1.1
4,411,303	-				-1.8
4,411,303	-				-0.5
4,411,306	+				-1.3
4,411,306	+				+0.2
4,411,307	-				-0.0
4,411,307	-				-0.1
4,411,313	+				-1.8
4,411,342	+				-0.0
4,411,342	+				-1.8
4,411,343	-				-0.3
4,411,353	+				-0.3
4,411,354	-				-1.0
4,411,354	-				-2.6
4,411,361	-				+0.5
4,411,361	-				-1.0
4,411,411	+				+1.3
4,411,411	+				-2.0
4,411,411	+				+0.2
4,411,411	+				-0.1
4,411,411	+				+0.0
4,411,411	+				-2.3
4,411,412	-				-0.6
4,411,412	-				-0.9
4,411,412	-				-0.2
4,411,412	-				+0.2
4,411,412	-				-0.7
4,411,412	-				+0.3
4,411,412	-				+0.6
4,411,412	-				+0.8
4,411,412	-				+1.4
4,411,441	+				+1.3
4,411,441	+				+5.8
4,411,441	+				-1.0
4,411,442	-				-0.6
4,411,442	-				-0.6
4,411,447	-				-0.8
4,411,447	-				+1.8
4,411,496	-				-1.6
4,411,511	+				+0.8
4,411,511	+				+1.1
4,411,512	-				-1.2
4,411,512	-				-1.3
4,411,512	-				-1.2
4,411,596	+		DDA3937_RS19400	0.52	+0.4
4,411,596	+		DDA3937_RS19400	0.52	-0.2
4,411,596	+		DDA3937_RS19400	0.52	+1.8
4,411,596	+		DDA3937_RS19400	0.52	-2.0
4,411,596	+		DDA3937_RS19400	0.52	-0.3
4,411,596	+		DDA3937_RS19400	0.52	+0.5
4,411,596	+		DDA3937_RS19400	0.52	+0.3
4,411,597	-		DDA3937_RS19400	0.53	+0.4
4,411,597	-		DDA3937_RS19400	0.53	-0.4
4,411,634	+				+0.8