Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS18875 and DDA3937_RS18880 are separated by 10 nucleotides DDA3937_RS18880 and DDA3937_RS18885 are separated by 448 nucleotides
DDA3937_RS18875: DDA3937_RS18875 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifN, at 4,311,482 to 4,312,867
_RS18875
DDA3937_RS18880: DDA3937_RS18880 - nitrogenase iron-molybdenum cofactor biosynthesis protein NifE, at 4,312,878 to 4,314,251
_RS18880
DDA3937_RS18885: DDA3937_RS18885 - Tar ligand binding domain-containing protein, at 4,314,700 to 4,316,292
_RS18885
Position (kb) 4312
4313
4314
4315 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 4312.113 kb on - strand, within DDA3937_RS18875 at 4312.299 kb on + strand, within DDA3937_RS18875 at 4312.299 kb on + strand, within DDA3937_RS18875 at 4312.300 kb on - strand, within DDA3937_RS18875 at 4312.300 kb on - strand, within DDA3937_RS18875 at 4312.300 kb on - strand, within DDA3937_RS18875 at 4312.452 kb on + strand, within DDA3937_RS18875 at 4312.492 kb on + strand, within DDA3937_RS18875 at 4312.820 kb on - strand at 4312.917 kb on - strand at 4313.029 kb on + strand, within DDA3937_RS18880 at 4313.029 kb on + strand, within DDA3937_RS18880 at 4313.029 kb on + strand, within DDA3937_RS18880 at 4313.030 kb on - strand, within DDA3937_RS18880 at 4313.030 kb on - strand, within DDA3937_RS18880 at 4313.038 kb on + strand, within DDA3937_RS18880 at 4313.038 kb on + strand, within DDA3937_RS18880 at 4313.038 kb on + strand, within DDA3937_RS18880 at 4313.039 kb on - strand, within DDA3937_RS18880 at 4313.039 kb on - strand, within DDA3937_RS18880 at 4313.039 kb on - strand, within DDA3937_RS18880 at 4313.207 kb on + strand, within DDA3937_RS18880 at 4313.263 kb on + strand, within DDA3937_RS18880 at 4313.263 kb on + strand, within DDA3937_RS18880 at 4313.263 kb on + strand, within DDA3937_RS18880 at 4313.264 kb on - strand, within DDA3937_RS18880 at 4313.264 kb on - strand, within DDA3937_RS18880 at 4313.264 kb on - strand, within DDA3937_RS18880 at 4313.276 kb on + strand, within DDA3937_RS18880 at 4313.277 kb on - strand, within DDA3937_RS18880 at 4313.277 kb on - strand, within DDA3937_RS18880 at 4313.287 kb on - strand, within DDA3937_RS18880 at 4313.287 kb on - strand, within DDA3937_RS18880 at 4313.287 kb on - strand, within DDA3937_RS18880 at 4313.458 kb on + strand, within DDA3937_RS18880 at 4313.782 kb on + strand, within DDA3937_RS18880 at 4313.890 kb on + strand, within DDA3937_RS18880 at 4313.890 kb on + strand, within DDA3937_RS18880 at 4313.890 kb on + strand, within DDA3937_RS18880 at 4313.890 kb on + strand, within DDA3937_RS18880 at 4313.891 kb on - strand, within DDA3937_RS18880 at 4313.891 kb on - strand, within DDA3937_RS18880 at 4313.891 kb on - strand, within DDA3937_RS18880 at 4313.891 kb on - strand, within DDA3937_RS18880 at 4313.891 kb on - strand, within DDA3937_RS18880 at 4313.894 kb on + strand, within DDA3937_RS18880 at 4313.895 kb on - strand, within DDA3937_RS18880 at 4313.927 kb on + strand, within DDA3937_RS18880 at 4314.060 kb on - strand, within DDA3937_RS18880 at 4314.085 kb on - strand, within DDA3937_RS18880 at 4314.167 kb on + strand at 4314.200 kb on + strand at 4314.200 kb on + strand at 4314.200 kb on + strand at 4314.200 kb on + strand at 4314.200 kb on + strand at 4314.201 kb on - strand at 4314.201 kb on - strand at 4314.201 kb on - strand at 4314.201 kb on - strand at 4314.275 kb on + strand at 4314.322 kb on + strand at 4314.347 kb on + strand at 4314.420 kb on + strand at 4314.420 kb on + strand at 4314.420 kb on + strand at 4314.421 kb on - strand at 4314.442 kb on - strand at 4314.442 kb on - strand at 4314.448 kb on - strand at 4314.450 kb on + strand at 4314.450 kb on + strand at 4314.451 kb on - strand at 4314.503 kb on + strand at 4314.526 kb on - strand at 4314.526 kb on - strand at 4314.592 kb on + strand at 4314.592 kb on + strand at 4314.592 kb on + strand at 4314.592 kb on + strand at 4314.592 kb on + strand at 4314.592 kb on + strand at 4314.593 kb on - strand at 4314.593 kb on - strand at 4314.593 kb on - strand at 4314.593 kb on - strand at 4314.593 kb on - strand at 4314.593 kb on - strand at 4314.596 kb on + strand at 4314.596 kb on + strand at 4314.597 kb on - strand at 4314.705 kb on - strand at 4314.749 kb on + strand at 4314.750 kb on - strand at 4314.762 kb on - strand at 4314.762 kb on - strand at 4314.764 kb on + strand at 4314.764 kb on + strand at 4314.764 kb on + strand at 4314.765 kb on - strand at 4314.781 kb on + strand at 4314.781 kb on + strand at 4314.782 kb on - strand at 4314.782 kb on - strand at 4314.782 kb on - strand at 4314.782 kb on - strand at 4314.791 kb on - strand at 4314.791 kb on - strand at 4314.852 kb on + strand at 4314.852 kb on + strand at 4314.853 kb on - strand at 4314.862 kb on + strand, within DDA3937_RS18885 at 4314.862 kb on + strand, within DDA3937_RS18885 at 4314.863 kb on - strand, within DDA3937_RS18885 at 4314.872 kb on - strand, within DDA3937_RS18885 at 4314.980 kb on - strand, within DDA3937_RS18885 at 4314.999 kb on + strand, within DDA3937_RS18885 at 4315.000 kb on - strand, within DDA3937_RS18885 at 4315.020 kb on + strand, within DDA3937_RS18885 at 4315.021 kb on - strand, within DDA3937_RS18885 at 4315.084 kb on + strand, within DDA3937_RS18885 at 4315.084 kb on + strand, within DDA3937_RS18885 at 4315.084 kb on + strand, within DDA3937_RS18885 at 4315.085 kb on - strand, within DDA3937_RS18885 at 4315.147 kb on + strand, within DDA3937_RS18885 at 4315.147 kb on + strand, within DDA3937_RS18885 at 4315.148 kb on - strand, within DDA3937_RS18885 at 4315.231 kb on - strand, within DDA3937_RS18885
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,312,113 - DDA3937_RS18875 0.46 +0.0 4,312,299 + DDA3937_RS18875 0.59 +1.8 4,312,299 + DDA3937_RS18875 0.59 +0.4 4,312,300 - DDA3937_RS18875 0.59 -0.1 4,312,300 - DDA3937_RS18875 0.59 -1.5 4,312,300 - DDA3937_RS18875 0.59 -2.0 4,312,452 + DDA3937_RS18875 0.70 +1.5 4,312,492 + DDA3937_RS18875 0.73 +1.3 4,312,820 - -0.1 4,312,917 - -0.4 4,313,029 + DDA3937_RS18880 0.11 +1.0 4,313,029 + DDA3937_RS18880 0.11 +0.0 4,313,029 + DDA3937_RS18880 0.11 -0.9 4,313,030 - DDA3937_RS18880 0.11 +2.2 4,313,030 - DDA3937_RS18880 0.11 +7.3 4,313,038 + DDA3937_RS18880 0.12 +1.8 4,313,038 + DDA3937_RS18880 0.12 -0.3 4,313,038 + DDA3937_RS18880 0.12 -1.4 4,313,039 - DDA3937_RS18880 0.12 +0.8 4,313,039 - DDA3937_RS18880 0.12 +0.0 4,313,039 - DDA3937_RS18880 0.12 -1.1 4,313,207 + DDA3937_RS18880 0.24 -2.4 4,313,263 + DDA3937_RS18880 0.28 +0.8 4,313,263 + DDA3937_RS18880 0.28 -0.0 4,313,263 + DDA3937_RS18880 0.28 -2.1 4,313,264 - DDA3937_RS18880 0.28 +1.0 4,313,264 - DDA3937_RS18880 0.28 -1.2 4,313,264 - DDA3937_RS18880 0.28 -1.0 4,313,276 + DDA3937_RS18880 0.29 -0.5 4,313,277 - DDA3937_RS18880 0.29 -0.5 4,313,277 - DDA3937_RS18880 0.29 +0.4 4,313,287 - DDA3937_RS18880 0.30 +0.6 4,313,287 - DDA3937_RS18880 0.30 -0.3 4,313,287 - DDA3937_RS18880 0.30 -2.0 4,313,458 + DDA3937_RS18880 0.42 -0.2 4,313,782 + DDA3937_RS18880 0.66 +0.3 4,313,890 + DDA3937_RS18880 0.74 +0.0 4,313,890 + DDA3937_RS18880 0.74 -0.0 4,313,890 + DDA3937_RS18880 0.74 +6.5 4,313,890 + DDA3937_RS18880 0.74 +0.4 4,313,891 - DDA3937_RS18880 0.74 +1.6 4,313,891 - DDA3937_RS18880 0.74 +0.6 4,313,891 - DDA3937_RS18880 0.74 +1.2 4,313,891 - DDA3937_RS18880 0.74 -1.9 4,313,891 - DDA3937_RS18880 0.74 -1.5 4,313,894 + DDA3937_RS18880 0.74 -1.0 4,313,895 - DDA3937_RS18880 0.74 -1.1 4,313,927 + DDA3937_RS18880 0.76 +1.6 4,314,060 - DDA3937_RS18880 0.86 -0.6 4,314,085 - DDA3937_RS18880 0.88 -1.2 4,314,167 + +1.4 4,314,200 + -0.3 4,314,200 + -1.1 4,314,200 + +1.1 4,314,200 + -1.6 4,314,200 + +1.8 4,314,201 - -0.4 4,314,201 - +0.0 4,314,201 - -0.6 4,314,201 - +0.5 4,314,275 + -1.1 4,314,322 + +0.0 4,314,347 + +1.9 4,314,420 + -0.4 4,314,420 + +0.5 4,314,420 + -0.4 4,314,421 - +0.5 4,314,442 - -0.9 4,314,442 - +0.5 4,314,448 - -1.2 4,314,450 + -1.9 4,314,450 + -0.7 4,314,451 - -0.2 4,314,503 + -0.4 4,314,526 - -1.5 4,314,526 - -1.8 4,314,592 + -1.0 4,314,592 + -0.6 4,314,592 + -0.1 4,314,592 + -0.6 4,314,592 + +1.2 4,314,592 + +0.2 4,314,593 - -0.2 4,314,593 - -2.1 4,314,593 - -0.6 4,314,593 - -1.8 4,314,593 - -1.9 4,314,593 - +0.8 4,314,596 + +0.1 4,314,596 + -1.1 4,314,597 - -0.4 4,314,705 - +0.0 4,314,749 + -1.6 4,314,750 - -2.0 4,314,762 - -0.5 4,314,762 - +0.1 4,314,764 + -0.8 4,314,764 + -1.6 4,314,764 + +0.4 4,314,765 - +0.5 4,314,781 + -0.9 4,314,781 + -0.1 4,314,782 - -0.5 4,314,782 - -1.9 4,314,782 - -1.2 4,314,782 - -0.7 4,314,791 - -0.9 4,314,791 - -0.9 4,314,852 + -1.1 4,314,852 + +0.6 4,314,853 - +0.2 4,314,862 + DDA3937_RS18885 0.10 -0.4 4,314,862 + DDA3937_RS18885 0.10 -0.6 4,314,863 - DDA3937_RS18885 0.10 +0.7 4,314,872 - DDA3937_RS18885 0.11 +2.1 4,314,980 - DDA3937_RS18885 0.18 -0.3 4,314,999 + DDA3937_RS18885 0.19 +1.3 4,315,000 - DDA3937_RS18885 0.19 -0.6 4,315,020 + DDA3937_RS18885 0.20 -0.1 4,315,021 - DDA3937_RS18885 0.20 -1.4 4,315,084 + DDA3937_RS18885 0.24 -0.2 4,315,084 + DDA3937_RS18885 0.24 -0.2 4,315,084 + DDA3937_RS18885 0.24 -0.4 4,315,085 - DDA3937_RS18885 0.24 -0.1 4,315,147 + DDA3937_RS18885 0.28 -0.8 4,315,147 + DDA3937_RS18885 0.28 +1.1 4,315,148 - DDA3937_RS18885 0.28 +0.5 4,315,231 - DDA3937_RS18885 0.33 -0.6
Or see this region's nucleotide sequence