Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18565

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS18560 and DDA3937_RS18565 are separated by 104 nucleotidesDDA3937_RS18565 and DDA3937_RS18570 overlap by 1 nucleotidesDDA3937_RS18570 and DDA3937_RS18575 are separated by 78 nucleotides DDA3937_RS18560: DDA3937_RS18560 - glutathione synthase, at 4,243,626 to 4,244,579 _RS18560 DDA3937_RS18565: DDA3937_RS18565 - YqgE/AlgH family protein, at 4,244,684 to 4,245,247 _RS18565 DDA3937_RS18570: DDA3937_RS18570 - Holliday junction resolvase RuvX, at 4,245,247 to 4,245,678 _RS18570 DDA3937_RS18575: DDA3937_RS18575 - class 1 fructose-bisphosphatase, at 4,245,757 to 4,246,761 _RS18575 Position (kb) 4244 4245 4246Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4243.734 kb on + strand, within DDA3937_RS18560at 4243.734 kb on + strand, within DDA3937_RS18560at 4243.734 kb on + strand, within DDA3937_RS18560at 4243.734 kb on + strandat 4243.737 kb on - strandat 4243.737 kb on - strand, within DDA3937_RS18560at 4243.806 kb on + strand, within DDA3937_RS18560at 4243.812 kb on + strand, within DDA3937_RS18560at 4243.914 kb on + strand, within DDA3937_RS18560at 4243.923 kb on + strand, within DDA3937_RS18560at 4243.923 kb on + strand, within DDA3937_RS18560at 4243.923 kb on + strand, within DDA3937_RS18560at 4243.924 kb on - strand, within DDA3937_RS18560at 4243.924 kb on - strand, within DDA3937_RS18560at 4243.924 kb on - strand, within DDA3937_RS18560at 4244.286 kb on + strand, within DDA3937_RS18560at 4244.529 kb on - strandat 4244.532 kb on - strandat 4244.583 kb on + strandat 4244.611 kb on + strandat 4244.611 kb on + strandat 4244.611 kb on + strandat 4244.611 kb on + strandat 4244.611 kb on + strandat 4244.611 kb on + strandat 4244.612 kb on - strandat 4244.612 kb on - strandat 4244.612 kb on - strandat 4244.677 kb on - strandat 4244.677 kb on - strandat 4244.677 kb on - strandat 4244.691 kb on + strandat 4244.756 kb on + strand, within DDA3937_RS18565at 4244.756 kb on + strand, within DDA3937_RS18565at 4244.756 kb on + strand, within DDA3937_RS18565at 4244.756 kb on + strand, within DDA3937_RS18565at 4244.756 kb on + strand, within DDA3937_RS18565at 4244.756 kb on + strand, within DDA3937_RS18565at 4244.756 kb on + strand, within DDA3937_RS18565at 4244.756 kb on + strand, within DDA3937_RS18565at 4244.833 kb on + strand, within DDA3937_RS18565at 4244.872 kb on + strand, within DDA3937_RS18565at 4244.872 kb on + strand, within DDA3937_RS18565at 4244.872 kb on + strand, within DDA3937_RS18565at 4244.944 kb on + strand, within DDA3937_RS18565at 4244.976 kb on + strand, within DDA3937_RS18565at 4245.001 kb on + strand, within DDA3937_RS18565at 4245.001 kb on + strand, within DDA3937_RS18565at 4245.001 kb on + strand, within DDA3937_RS18565at 4245.132 kb on + strand, within DDA3937_RS18565at 4245.132 kb on + strand, within DDA3937_RS18565at 4245.132 kb on + strand, within DDA3937_RS18565at 4245.133 kb on - strand, within DDA3937_RS18565at 4245.150 kb on + strand, within DDA3937_RS18565at 4245.150 kb on + strand, within DDA3937_RS18565at 4245.150 kb on + strand, within DDA3937_RS18565at 4245.150 kb on + strand, within DDA3937_RS18565at 4245.150 kb on + strand, within DDA3937_RS18565at 4245.150 kb on + strand, within DDA3937_RS18565at 4245.151 kb on - strand, within DDA3937_RS18565at 4245.151 kb on - strand, within DDA3937_RS18565at 4245.151 kb on - strand, within DDA3937_RS18565at 4245.217 kb on + strandat 4245.217 kb on + strandat 4245.220 kb on + strandat 4245.258 kb on + strandat 4245.258 kb on + strandat 4245.676 kb on + strandat 4245.676 kb on + strandat 4245.687 kb on + strandat 4245.687 kb on + strandat 4245.687 kb on + strandat 4245.688 kb on - strandat 4245.688 kb on - strandat 4245.688 kb on - strandat 4245.688 kb on - strandat 4245.724 kb on + strandat 4245.724 kb on + strandat 4245.741 kb on - strandat 4245.759 kb on - strandat 4245.856 kb on - strandat 4245.856 kb on - strandat 4245.856 kb on - strandat 4245.940 kb on + strand, within DDA3937_RS18575at 4245.940 kb on + strand, within DDA3937_RS18575at 4245.987 kb on - strand, within DDA3937_RS18575at 4245.987 kb on - strand, within DDA3937_RS18575at 4246.008 kb on + strand, within DDA3937_RS18575at 4246.038 kb on + strand, within DDA3937_RS18575at 4246.039 kb on - strand, within DDA3937_RS18575at 4246.040 kb on + strand, within DDA3937_RS18575at 4246.040 kb on + strand, within DDA3937_RS18575at 4246.041 kb on - strand, within DDA3937_RS18575at 4246.053 kb on - strand, within DDA3937_RS18575at 4246.053 kb on - strand, within DDA3937_RS18575at 4246.088 kb on + strand, within DDA3937_RS18575at 4246.089 kb on - strand, within DDA3937_RS18575at 4246.097 kb on + strand, within DDA3937_RS18575at 4246.097 kb on + strand, within DDA3937_RS18575at 4246.098 kb on - strand, within DDA3937_RS18575at 4246.098 kb on - strand, within DDA3937_RS18575at 4246.098 kb on - strand, within DDA3937_RS18575at 4246.098 kb on - strand, within DDA3937_RS18575at 4246.098 kb on - strand, within DDA3937_RS18575at 4246.127 kb on + strand, within DDA3937_RS18575at 4246.127 kb on + strand, within DDA3937_RS18575at 4246.127 kb on + strand, within DDA3937_RS18575at 4246.127 kb on + strand, within DDA3937_RS18575at 4246.127 kb on + strand, within DDA3937_RS18575at 4246.128 kb on - strand, within DDA3937_RS18575at 4246.128 kb on - strand, within DDA3937_RS18575at 4246.128 kb on - strand, within DDA3937_RS18575at 4246.128 kb on - strand, within DDA3937_RS18575at 4246.128 kb on - strand, within DDA3937_RS18575at 4246.128 kb on - strand, within DDA3937_RS18575at 4246.128 kb on - strand, within DDA3937_RS18575at 4246.148 kb on + strand, within DDA3937_RS18575at 4246.148 kb on + strand, within DDA3937_RS18575at 4246.148 kb on + strand, within DDA3937_RS18575at 4246.148 kb on + strand, within DDA3937_RS18575at 4246.148 kb on + strand, within DDA3937_RS18575at 4246.148 kb on + strand, within DDA3937_RS18575at 4246.149 kb on - strand, within DDA3937_RS18575at 4246.149 kb on - strand, within DDA3937_RS18575at 4246.149 kb on - strand, within DDA3937_RS18575at 4246.198 kb on + strand, within DDA3937_RS18575at 4246.217 kb on + strand, within DDA3937_RS18575at 4246.217 kb on + strand, within DDA3937_RS18575at 4246.217 kb on + strand, within DDA3937_RS18575at 4246.217 kb on + strand, within DDA3937_RS18575at 4246.218 kb on - strand, within DDA3937_RS18575at 4246.218 kb on - strand, within DDA3937_RS18575at 4246.218 kb on - strand, within DDA3937_RS18575at 4246.218 kb on - strand, within DDA3937_RS18575at 4246.218 kb on - strand, within DDA3937_RS18575at 4246.218 kb on - strand, within DDA3937_RS18575at 4246.218 kb on - strand, within DDA3937_RS18575at 4246.218 kb on - strand, within DDA3937_RS18575at 4246.231 kb on + strand, within DDA3937_RS18575at 4246.231 kb on + strand, within DDA3937_RS18575at 4246.231 kb on + strand, within DDA3937_RS18575at 4246.232 kb on - strand, within DDA3937_RS18575at 4246.232 kb on - strand, within DDA3937_RS18575at 4246.232 kb on - strand, within DDA3937_RS18575at 4246.232 kb on - strand, within DDA3937_RS18575

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,243,734 + DDA3937_RS18560 0.11 +0.2
4,243,734 + DDA3937_RS18560 0.11 +0.8
4,243,734 + DDA3937_RS18560 0.11 +1.7
4,243,734 + -0.2
4,243,737 - -0.5
4,243,737 - DDA3937_RS18560 0.12 +1.2
4,243,806 + DDA3937_RS18560 0.19 -1.4
4,243,812 + DDA3937_RS18560 0.19 -1.4
4,243,914 + DDA3937_RS18560 0.30 +0.5
4,243,923 + DDA3937_RS18560 0.31 -0.1
4,243,923 + DDA3937_RS18560 0.31 -0.5
4,243,923 + DDA3937_RS18560 0.31 -0.8
4,243,924 - DDA3937_RS18560 0.31 -1.2
4,243,924 - DDA3937_RS18560 0.31 +0.6
4,243,924 - DDA3937_RS18560 0.31 +2.7
4,244,286 + DDA3937_RS18560 0.69 +0.8
4,244,529 - +0.5
4,244,532 - -0.5
4,244,583 + -1.7
4,244,611 + -0.9
4,244,611 + -0.5
4,244,611 + -0.2
4,244,611 + -0.1
4,244,611 + -2.1
4,244,611 + +0.3
4,244,612 - -1.6
4,244,612 - +0.7
4,244,612 - -0.2
4,244,677 - -1.8
4,244,677 - -2.3
4,244,677 - +0.2
4,244,691 + +0.7
4,244,756 + DDA3937_RS18565 0.13 +0.2
4,244,756 + DDA3937_RS18565 0.13 -0.4
4,244,756 + DDA3937_RS18565 0.13 -1.2
4,244,756 + DDA3937_RS18565 0.13 +0.9
4,244,756 + DDA3937_RS18565 0.13 +0.3
4,244,756 + DDA3937_RS18565 0.13 +4.0
4,244,756 + DDA3937_RS18565 0.13 +0.6
4,244,756 + DDA3937_RS18565 0.13 -0.2
4,244,833 + DDA3937_RS18565 0.26 -1.0
4,244,872 + DDA3937_RS18565 0.33 +1.0
4,244,872 + DDA3937_RS18565 0.33 -0.4
4,244,872 + DDA3937_RS18565 0.33 -1.0
4,244,944 + DDA3937_RS18565 0.46 +1.6
4,244,976 + DDA3937_RS18565 0.52 +1.6
4,245,001 + DDA3937_RS18565 0.56 -0.2
4,245,001 + DDA3937_RS18565 0.56 -0.3
4,245,001 + DDA3937_RS18565 0.56 -0.4
4,245,132 + DDA3937_RS18565 0.79 +0.1
4,245,132 + DDA3937_RS18565 0.79 -1.3
4,245,132 + DDA3937_RS18565 0.79 -0.4
4,245,133 - DDA3937_RS18565 0.80 +0.2
4,245,150 + DDA3937_RS18565 0.83 +0.4
4,245,150 + DDA3937_RS18565 0.83 +0.2
4,245,150 + DDA3937_RS18565 0.83 -1.0
4,245,150 + DDA3937_RS18565 0.83 +0.1
4,245,150 + DDA3937_RS18565 0.83 +1.3
4,245,150 + DDA3937_RS18565 0.83 +0.5
4,245,151 - DDA3937_RS18565 0.83 -0.9
4,245,151 - DDA3937_RS18565 0.83 -0.5
4,245,151 - DDA3937_RS18565 0.83 -1.3
4,245,217 + +0.1
4,245,217 + +0.5
4,245,220 + -0.3
4,245,258 + +0.2
4,245,258 + -0.8
4,245,676 + -0.0
4,245,676 + -1.3
4,245,687 + -1.5
4,245,687 + -0.4
4,245,687 + +1.2
4,245,688 - -1.1
4,245,688 - -0.2
4,245,688 - -1.7
4,245,688 - +0.5
4,245,724 + -0.3
4,245,724 + -3.4
4,245,741 - -0.4
4,245,759 - -0.1
4,245,856 - -1.9
4,245,856 - -2.4
4,245,856 - -1.7
4,245,940 + DDA3937_RS18575 0.18 -0.5
4,245,940 + DDA3937_RS18575 0.18 -2.7
4,245,987 - DDA3937_RS18575 0.23 -0.9
4,245,987 - DDA3937_RS18575 0.23 -1.4
4,246,008 + DDA3937_RS18575 0.25 +0.4
4,246,038 + DDA3937_RS18575 0.28 -0.9
4,246,039 - DDA3937_RS18575 0.28 +0.0
4,246,040 + DDA3937_RS18575 0.28 -0.8
4,246,040 + DDA3937_RS18575 0.28 -0.8
4,246,041 - DDA3937_RS18575 0.28 -0.8
4,246,053 - DDA3937_RS18575 0.29 -0.2
4,246,053 - DDA3937_RS18575 0.29 -1.0
4,246,088 + DDA3937_RS18575 0.33 -2.1
4,246,089 - DDA3937_RS18575 0.33 +0.8
4,246,097 + DDA3937_RS18575 0.34 +0.2
4,246,097 + DDA3937_RS18575 0.34 -1.4
4,246,098 - DDA3937_RS18575 0.34 +1.2
4,246,098 - DDA3937_RS18575 0.34 -0.4
4,246,098 - DDA3937_RS18575 0.34 -0.2
4,246,098 - DDA3937_RS18575 0.34 +0.2
4,246,098 - DDA3937_RS18575 0.34 -0.2
4,246,127 + DDA3937_RS18575 0.37 -1.2
4,246,127 + DDA3937_RS18575 0.37 -2.3
4,246,127 + DDA3937_RS18575 0.37 -1.2
4,246,127 + DDA3937_RS18575 0.37 +2.4
4,246,127 + DDA3937_RS18575 0.37 -1.2
4,246,128 - DDA3937_RS18575 0.37 -0.6
4,246,128 - DDA3937_RS18575 0.37 +0.8
4,246,128 - DDA3937_RS18575 0.37 -0.5
4,246,128 - DDA3937_RS18575 0.37 -1.0
4,246,128 - DDA3937_RS18575 0.37 -0.9
4,246,128 - DDA3937_RS18575 0.37 -0.5
4,246,128 - DDA3937_RS18575 0.37 -0.2
4,246,148 + DDA3937_RS18575 0.39 -0.5
4,246,148 + DDA3937_RS18575 0.39 +0.2
4,246,148 + DDA3937_RS18575 0.39 -0.0
4,246,148 + DDA3937_RS18575 0.39 -1.8
4,246,148 + DDA3937_RS18575 0.39 -0.8
4,246,148 + DDA3937_RS18575 0.39 +0.4
4,246,149 - DDA3937_RS18575 0.39 -1.4
4,246,149 - DDA3937_RS18575 0.39 -0.6
4,246,149 - DDA3937_RS18575 0.39 +0.2
4,246,198 + DDA3937_RS18575 0.44 -0.5
4,246,217 + DDA3937_RS18575 0.46 -0.0
4,246,217 + DDA3937_RS18575 0.46 -0.7
4,246,217 + DDA3937_RS18575 0.46 +0.8
4,246,217 + DDA3937_RS18575 0.46 +0.2
4,246,218 - DDA3937_RS18575 0.46 -2.9
4,246,218 - DDA3937_RS18575 0.46 -2.9
4,246,218 - DDA3937_RS18575 0.46 -1.2
4,246,218 - DDA3937_RS18575 0.46 -0.5
4,246,218 - DDA3937_RS18575 0.46 -0.8
4,246,218 - DDA3937_RS18575 0.46 -0.8
4,246,218 - DDA3937_RS18575 0.46 -0.8
4,246,218 - DDA3937_RS18575 0.46 +1.0
4,246,231 + DDA3937_RS18575 0.47 -1.8
4,246,231 + DDA3937_RS18575 0.47 -1.5
4,246,231 + DDA3937_RS18575 0.47 -1.2
4,246,232 - DDA3937_RS18575 0.47 -1.9
4,246,232 - DDA3937_RS18575 0.47 -1.8
4,246,232 - DDA3937_RS18575 0.47 +0.5
4,246,232 - DDA3937_RS18575 0.47 +0.6

Or see this region's nucleotide sequence