Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS18420

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,208,710	-		DDA3937_RS18415	0.81	+1.2
4,208,710	-		DDA3937_RS18415	0.81	+0.2
4,208,777	+		DDA3937_RS18415	0.83	-2.0
4,208,778	-		DDA3937_RS18415	0.83	-0.8
4,208,822	-		DDA3937_RS18415	0.85	-0.2
4,208,894	-		DDA3937_RS18415	0.88	-1.0
4,208,929	-		DDA3937_RS18415	0.89	-0.4
4,208,929	-		DDA3937_RS18415	0.89	-1.7
4,208,929	-		DDA3937_RS18415	0.89	-1.3
4,208,999	-				-0.6
4,209,011	-				+1.8
4,209,019	+				-0.3
4,209,019	+				-1.5
4,209,019	+				-0.6
4,209,020	-				+1.8
4,209,020	-				-1.5
4,209,261	+				-1.1
4,209,261	+				-0.5
4,209,261	+				-3.2
4,209,262	-				-0.4
4,209,262	-				-0.2
4,209,262	-				-0.9
4,209,262	-				-0.5
4,209,262	-				-1.4
4,209,264	+				-1.2
4,209,265	-				-0.5
4,209,283	+				-1.0
4,209,284	-				-1.1
4,209,294	+				-1.1
4,209,294	+				-0.7
4,209,295	-				-1.0
4,209,351	-				-1.8
4,209,388	+				-0.2
4,209,388	+				+0.7
4,209,388	+				-0.3
4,209,391	+				-0.2
4,209,391	+				+1.1
4,209,391	+				+0.4
4,209,391	+				-1.0
4,209,391	+				-2.9
4,209,392	-				-1.3
4,209,392	-				-0.3
4,209,392	-				-0.1
4,209,392	-				+0.2
4,209,392	-				-0.2
4,209,392	-				-0.6
4,209,394	+				+0.1
4,209,394	+				+1.8
4,209,395	-				-1.2
4,209,395	-				-0.1
4,209,395	-				+0.2
4,209,395	-				+0.1
4,209,406	+				-1.2
4,209,433	-				-0.0
4,209,443	+				-1.0
4,209,444	-				+3.6
4,209,465	+				-0.1
4,209,465	+				+6.6
4,209,465	+				+0.8
4,209,466	-				-0.6
4,209,468	+				-0.7
4,209,468	+				-0.6
4,209,468	+				+3.3
4,209,468	+				+0.1
4,209,468	+				+2.8
4,209,468	+				+0.7
4,209,468	+				-1.9
4,209,469	-				-2.2
4,209,469	-				-1.8
4,209,469	-				-1.1
4,209,469	-				-0.3
4,209,469	-				+0.7
4,209,469	-				-1.2
4,209,469	-				-0.8
4,209,472	+				-2.1
4,209,490	-				-0.8
4,209,507	+				-0.2
4,209,524	+				+1.4
4,209,525	-				+0.4
4,209,706	+		DDA3937_RS18420	0.12	+0.1
4,209,867	-		DDA3937_RS18420	0.35	-0.5
4,209,867	-		DDA3937_RS18420	0.35	-1.0
4,209,872	+		DDA3937_RS18420	0.36	-1.6
4,209,872	+		DDA3937_RS18420	0.36	-0.2
4,209,872	+		DDA3937_RS18420	0.36	+0.8
4,209,872	+		DDA3937_RS18420	0.36	-1.7
4,209,872	+		DDA3937_RS18420	0.36	-0.8
4,209,872	+		DDA3937_RS18420	0.36	-0.9
4,209,872	+		DDA3937_RS18420	0.36	-0.1
4,209,872	+		DDA3937_RS18420	0.36	-1.8
4,209,872	+		DDA3937_RS18420	0.36	-0.5
4,209,872	+		DDA3937_RS18420	0.36	+0.4
4,209,873	-		DDA3937_RS18420	0.36	-1.1
4,209,873	-		DDA3937_RS18420	0.36	-0.1
4,209,873	-		DDA3937_RS18420	0.36	-0.8
4,209,873	-		DDA3937_RS18420	0.36	-0.8
4,209,873	-		DDA3937_RS18420	0.36	+1.9
4,209,873	-		DDA3937_RS18420	0.36	-0.8
4,209,873	-		DDA3937_RS18420	0.36	-0.8
4,209,873	-		DDA3937_RS18420	0.36	+0.8
4,209,991	+		DDA3937_RS18420	0.53	-1.6
4,209,991	+		DDA3937_RS18420	0.53	+0.2
4,210,061	+		DDA3937_RS18420	0.63	-1.8
4,210,061	+		DDA3937_RS18420	0.63	-0.5
4,210,061	+		DDA3937_RS18420	0.63	-0.9
4,210,062	-				+1.8
4,210,064	+		DDA3937_RS18420	0.63	+0.9
4,210,064	+		DDA3937_RS18420	0.63	-1.0
4,210,065	-		DDA3937_RS18420	0.63	-0.8
4,210,104	+		DDA3937_RS18420	0.69	+0.3
4,210,150	+		DDA3937_RS18420	0.75	-0.6
4,210,150	+		DDA3937_RS18420	0.75	-1.2
4,210,313	+				+0.5
4,210,313	+				-0.7
4,210,313	+				-1.0
4,210,314	-				-1.4
4,210,338	-				-0.6
4,210,379	+				-1.6
4,210,502	+				-2.7
4,210,502	+				+2.3
4,210,503	-				-0.8
4,210,503	-				-0.4
4,210,519	+				+1.0
4,210,530	+				-1.2
4,210,540	+				-0.7
4,210,541	-				-1.7
4,210,586	+				-0.9
4,210,586	+				-1.8
4,210,586	+				-0.6
4,210,586	+				+0.5
4,210,587	-				+0.8
4,210,587	-				+1.2
4,210,601	+				+3.4
4,210,601	+				+1.0
4,210,602	-				-1.0
4,210,604	-				-1.5
4,210,604	-				-1.3
4,210,620	-				-0.4
4,210,620	-				-0.7
4,210,654	+				-0.6
4,210,654	+				-0.1
4,210,655	-				-1.3
4,210,655	-				+0.2
4,210,655	-				-2.0
4,210,655	-				-0.5
4,210,665	+				-0.4
4,210,665	+				-0.6
4,210,666	-				-1.0
4,210,668	+				-1.6
4,210,668	+				+1.8
4,210,669	-				+0.8
4,210,669	-				+0.4
4,210,675	-				-0.6
4,210,691	+				+1.0
4,210,691	+				+0.6
4,210,691	+				-1.4
4,210,691	+				-0.7
4,210,691	+				-0.7
4,210,724	+				-0.9
4,210,764	+				+0.2
4,210,768	+				-1.4
4,210,768	+				-1.3
4,210,768	+				-2.0
4,210,768	+				-1.1
4,210,768	+				+0.8
4,210,768	+				-1.8
4,210,769	-				-1.4
4,210,769	-				-0.5
4,210,769	-				+1.8
4,210,772	+				-0.7
4,210,772	+				+0.8
4,210,773	-				-0.5
4,210,773	-				+0.6
4,210,773	-				-1.4
4,210,773	-				-2.4
4,210,842	+				-0.9
4,210,842	+				-0.8
4,210,842	+				-0.4
4,210,842	+				-1.2
4,210,842	+				-0.8
4,210,842	+				-1.1
4,210,843	-				-2.3
4,210,856	+				-1.7
4,210,856	+				-0.8
4,210,856	+				-0.3
4,210,856	+				-2.8
4,210,856	+				-0.2
4,210,857	-				-1.5
4,210,857	-				+0.1
4,210,857	-				-1.0
4,210,858	+				-0.8
4,210,858	+				-1.1
4,210,859	-				+0.2
4,210,861	+				-1.1
4,210,861	+				-2.4
4,210,861	+				-0.9
4,210,861	+				-1.1
4,210,861	+				-1.0
4,210,862	-				+2.5
4,210,862	-				+0.2
4,210,862	-				-0.8
4,210,862	-				-0.5
4,210,862	-				-1.1
4,210,862	-				+0.6
4,210,862	-				-1.5
4,210,862	-				+0.4
4,210,878	+				-0.7
4,210,879	-				-0.8
4,210,906	+				-2.2
4,210,906	+				+0.5
4,210,906	+				-0.0
4,210,906	+				-0.4
4,210,906	+				+1.8
4,210,906	+				-1.4
4,210,906	+				-0.5
4,210,907	-				+1.8
4,210,907	-				+0.2
4,210,911	+				-0.5
4,210,912	-				-0.7
4,210,926	+				-1.2
4,210,934	-				-2.6
4,210,967	+		DDA3937_RS18425	0.11	-0.9
4,210,968	-		DDA3937_RS18425	0.11	-1.9
4,210,968	-		DDA3937_RS18425	0.11	-1.5
4,210,968	-		DDA3937_RS18425	0.11	-1.9
4,210,968	-		DDA3937_RS18425	0.11	+0.5
4,210,968	-		DDA3937_RS18425	0.11	-3.2
4,211,005	+		DDA3937_RS18425	0.17	-1.4
4,211,006	-		DDA3937_RS18425	0.17	-2.1
4,211,006	-		DDA3937_RS18425	0.17	-0.8
4,211,041	+		DDA3937_RS18425	0.22	-0.4
4,211,183	+		DDA3937_RS18425	0.41	-2.4
4,211,183	+		DDA3937_RS18425	0.41	-1.7
4,211,183	+		DDA3937_RS18425	0.41	-1.6
4,211,183	+		DDA3937_RS18425	0.41	-1.2
4,211,184	-		DDA3937_RS18425	0.42	-2.4
4,211,184	-		DDA3937_RS18425	0.42	-3.7
4,211,184	-		DDA3937_RS18425	0.42	-1.0
4,211,185	+		DDA3937_RS18425	0.42	-1.6
4,211,185	+		DDA3937_RS18425	0.42	+0.7
4,211,185	+		DDA3937_RS18425	0.42	-2.1
4,211,185	+		DDA3937_RS18425	0.42	-1.9
4,211,185	+		DDA3937_RS18425	0.42	-1.2
4,211,185	+		DDA3937_RS18425	0.42	-1.0
4,211,185	+		DDA3937_RS18425	0.42	+0.2
4,211,185	+		DDA3937_RS18425	0.42	-1.3
4,211,186	-		DDA3937_RS18425	0.42	-2.0
4,211,186	-		DDA3937_RS18425	0.42	-0.4
4,211,186	-		DDA3937_RS18425	0.42	-0.9
4,211,294	+		DDA3937_RS18425	0.57	-0.8
4,211,321	-		DDA3937_RS18425	0.61	-1.5