Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17675

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,022,316	+				+2.1
4,022,316	+				+0.7
4,022,316	+				+1.4
4,022,316	+				+2.8
4,022,316	+				+3.2
4,022,316	+				+1.6
4,022,316	+				+3.2
4,022,316	+				+3.1
4,022,317	-				+0.1
4,022,362	+				+2.1
4,022,362	+				+0.8
4,022,362	+				-2.2
4,022,362	+				-0.0
4,022,362	+				+1.6
4,022,362	+				-0.7
4,022,362	+				+0.9
4,022,363	-				+2.2
4,022,363	-				+0.3
4,022,363	-				-1.3
4,022,363	-				-1.1
4,022,364	+				-0.8
4,022,364	+				+0.9
4,022,364	+				+0.4
4,022,364	+				+1.3
4,022,364	+				+0.5
4,022,364	+				-1.2
4,022,364	+				+1.7
4,022,364	+				+1.2
4,022,364	+				-1.0
4,022,365	-				+3.0
4,022,365	-				+0.1
4,022,368	+				-0.3
4,022,368	+				+0.4
4,022,368	+				+0.3
4,022,369	-				+2.9
4,022,369	-				+0.7
4,022,369	-				-0.6
4,022,369	-				-0.1
4,022,397	+				+2.4
4,022,397	+				-1.4
4,022,397	+				+0.1
4,022,398	-				-0.9
4,022,398	-				-1.1
4,022,398	-				-1.1
4,022,398	-				-0.4
4,022,398	-				+0.1
4,022,472	+		DDA3937_RS17665	0.34	+1.0
4,022,481	+		DDA3937_RS17665	0.37	+0.9
4,022,481	+		DDA3937_RS17665	0.37	+0.1
4,022,482	-		DDA3937_RS17665	0.38	-1.1
4,022,482	-		DDA3937_RS17665	0.38	-0.5
4,022,485	-		DDA3937_RS17665	0.39	+0.6
4,022,652	+				+1.1
4,022,652	+				+0.4
4,022,653	-				+0.4
4,022,658	+				+1.6
4,022,658	+				+0.4
4,022,659	-				-0.1
4,022,754	+		DDA3937_RS17670	0.20	+1.6
4,022,755	-		DDA3937_RS17670	0.20	-0.5
4,022,834	+		DDA3937_RS17670	0.39	+1.9
4,022,835	-		DDA3937_RS17670	0.39	-0.9
4,022,845	+		DDA3937_RS17670	0.41	-1.1
4,023,029	-		DDA3937_RS17670	0.85	-0.9
4,023,056	+				-0.3
4,023,057	-				+0.1
4,023,472	+				+0.7
4,023,472	+				-0.1
4,023,472	+				-2.0
4,023,473	-				-0.5
4,023,504	+		DDA3937_RS17675	0.10	+0.6
4,023,557	+		DDA3937_RS17675	0.11	-1.6
4,023,557	+		DDA3937_RS17675	0.11	+1.1
4,023,618	+		DDA3937_RS17675	0.13	-1.4
4,023,619	-		DDA3937_RS17675	0.13	-1.0
4,023,619	-		DDA3937_RS17675	0.13	-0.7
4,023,622	+				+1.1
4,023,770	+		DDA3937_RS17675	0.16	+0.4
4,023,770	+		DDA3937_RS17675	0.16	+0.7
4,023,770	+		DDA3937_RS17675	0.16	-0.8
4,023,770	+		DDA3937_RS17675	0.16	-1.2
4,023,770	+		DDA3937_RS17675	0.16	-0.9
4,023,812	+		DDA3937_RS17675	0.17	+0.1
4,023,812	+		DDA3937_RS17675	0.17	+0.9
4,023,813	-		DDA3937_RS17675	0.17	-0.3
4,023,813	-		DDA3937_RS17675	0.17	+0.9
4,023,813	-		DDA3937_RS17675	0.17	-1.8
4,023,884	-		DDA3937_RS17675	0.19	+0.2
4,023,884	-		DDA3937_RS17675	0.19	-0.4
4,023,902	+		DDA3937_RS17675	0.20	+0.9
4,023,958	+		DDA3937_RS17675	0.21	+2.2
4,023,962	-		DDA3937_RS17675	0.21	-0.6
4,023,962	-		DDA3937_RS17675	0.21	+1.2
4,024,372	+		DDA3937_RS17675	0.31	-0.3
4,024,372	+		DDA3937_RS17675	0.31	-1.1
4,024,373	-		DDA3937_RS17675	0.31	-0.6
4,024,373	-		DDA3937_RS17675	0.31	-0.1
4,024,485	-		DDA3937_RS17675	0.34	-0.6
4,024,654	+		DDA3937_RS17675	0.38	-1.2
4,024,654	+		DDA3937_RS17675	0.38	-1.0
4,024,654	+		DDA3937_RS17675	0.38	-0.1
4,024,655	-		DDA3937_RS17675	0.38	+0.8
4,024,655	-		DDA3937_RS17675	0.38	-0.9
4,024,655	-		DDA3937_RS17675	0.38	+1.8
4,024,660	+		DDA3937_RS17675	0.38	-0.2
4,024,660	+		DDA3937_RS17675	0.38	-0.1
4,024,660	+		DDA3937_RS17675	0.38	+2.1
4,024,883	-		DDA3937_RS17675	0.43	-2.2
4,024,947	+		DDA3937_RS17675	0.45	+0.3
4,024,947	+		DDA3937_RS17675	0.45	-1.8
4,024,948	-		DDA3937_RS17675	0.45	-0.9
4,025,084	+		DDA3937_RS17675	0.48	-1.3
4,025,084	+		DDA3937_RS17675	0.48	+0.7
4,025,085	-		DDA3937_RS17675	0.48	-1.2
4,025,085	-		DDA3937_RS17675	0.48	+0.3
4,025,085	-		DDA3937_RS17675	0.48	-0.5
4,025,085	-		DDA3937_RS17675	0.48	+1.3
4,025,290	+		DDA3937_RS17675	0.53	+1.0
4,025,291	-		DDA3937_RS17675	0.53	+0.7
4,025,291	-		DDA3937_RS17675	0.53	-0.2
4,025,390	-		DDA3937_RS17675	0.55	-0.6
4,025,401	+		DDA3937_RS17675	0.56	-0.3
4,025,402	-				+0.1
4,025,407	-		DDA3937_RS17675	0.56	+2.3
4,025,522	+		DDA3937_RS17675	0.59	-0.4
4,025,682	+		DDA3937_RS17675	0.62	-2.3
4,025,743	+		DDA3937_RS17675	0.64	+0.5
4,025,953	-		DDA3937_RS17675	0.69	+1.0
4,026,129	+		DDA3937_RS17675	0.73	-0.3
4,026,147	+		DDA3937_RS17675	0.74	+5.7
4,026,147	+		DDA3937_RS17675	0.74	+0.1
4,026,147	+		DDA3937_RS17675	0.74	+2.9
4,026,148	-		DDA3937_RS17675	0.74	-0.2
4,026,148	-		DDA3937_RS17675	0.74	+0.5
4,026,205	+		DDA3937_RS17675	0.75	+0.5
4,026,278	+		DDA3937_RS17675	0.77	+0.5
4,026,278	+		DDA3937_RS17675	0.77	-1.8
4,026,278	+		DDA3937_RS17675	0.77	-0.3
4,026,279	-		DDA3937_RS17675	0.77	-0.4
4,026,279	-		DDA3937_RS17675	0.77	-1.6
4,026,395	+		DDA3937_RS17675	0.80	+0.5
4,026,396	-		DDA3937_RS17675	0.80	+0.2
4,026,502	+		DDA3937_RS17675	0.82	-0.6
4,026,771	+		DDA3937_RS17675	0.89	-0.6
4,026,832	-				-0.1
4,026,841	+				-0.1
4,026,842	-				-0.3
4,026,934	+				-1.2
4,026,935	-				-2.2
4,026,935	-				-1.6
4,027,073	+				-1.2
4,027,083	+				-0.3
4,027,084	-				+0.1
4,027,084	-				+1.5
4,027,119	+				-0.1
4,027,119	+				-0.8
4,027,120	-				-1.1
4,027,120	-				+1.6
4,027,120	-				+0.0
4,027,122	+				-0.2
4,027,271	-				-0.1
4,027,271	-				-0.0
4,027,271	-				+0.0
4,027,272	+				+0.2
4,027,272	+				-0.8
4,027,272	+				-0.3
4,027,272	+				-1.2
4,027,273	-				-0.7
4,027,273	-				-0.6
4,027,273	-				-2.0
4,027,273	-				-0.6
4,027,273	-				-0.4
4,027,273	-				-0.6
4,027,273	-				+1.1
4,027,273	-				-0.8
4,027,348	+				-0.7
4,027,348	+				+0.7
4,027,348	+				-0.6
4,027,349	-				-1.1
4,027,349	-				+1.7
4,027,349	-				-0.1
4,027,349	-				+0.3
4,027,349	-				-0.0
4,027,349	-				+1.4
4,027,349	-				+0.2
4,027,349	-				-0.7
4,027,375	+				-0.1
4,027,389	-				+0.7
4,027,389	-				-0.2
4,027,389	-				+1.7
4,027,474	+		DDA3937_RS17680	0.14	-0.9
4,027,474	+		DDA3937_RS17680	0.14	+0.3
4,027,475	-		DDA3937_RS17680	0.14	+0.2
4,027,976	+		DDA3937_RS17680	0.75	+0.7
4,027,977	-		DDA3937_RS17680	0.75	-1.8
4,027,977	-		DDA3937_RS17680	0.75	-0.5
4,027,977	-		DDA3937_RS17680	0.75	-0.7
4,027,977	-		DDA3937_RS17680	0.75	-0.4
4,027,977	-		DDA3937_RS17680	0.75	+0.5
4,027,979	+		DDA3937_RS17680	0.75	-0.6
4,027,980	-		DDA3937_RS17680	0.75	-0.5
4,027,980	-		DDA3937_RS17680	0.75	-0.6
4,028,115	-				+1.8
4,028,144	+				-1.8
4,028,144	+				-0.1
4,028,145	-				-1.0
4,028,145	-				-0.9
4,028,145	-				-1.0
4,028,145	-				-0.7
4,028,145	-				-0.6
4,028,145	-				-1.8
4,028,203	-				-0.1