Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17535

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,986,840	+		DDA3937_RS17530	0.65	-0.1
3,986,840	+		DDA3937_RS17530	0.65	-1.5
3,986,841	-		DDA3937_RS17530	0.65	+0.4
3,986,849	-		DDA3937_RS17530	0.66	-0.1
3,986,849	-		DDA3937_RS17530	0.66	-1.3
3,986,877	+		DDA3937_RS17530	0.68	-2.0
3,986,878	-		DDA3937_RS17530	0.68	-0.5
3,986,891	-		DDA3937_RS17530	0.69	-0.8
3,986,908	+		DDA3937_RS17530	0.70	-0.5
3,986,965	-		DDA3937_RS17530	0.74	-0.7
3,986,965	-		DDA3937_RS17530	0.74	+1.1
3,986,965	-		DDA3937_RS17530	0.74	-2.4
3,986,965	-		DDA3937_RS17530	0.74	-1.0
3,986,973	+		DDA3937_RS17530	0.75	-0.2
3,986,973	+		DDA3937_RS17530	0.75	-1.0
3,986,973	+		DDA3937_RS17530	0.75	-1.8
3,986,973	+		DDA3937_RS17530	0.75	+0.1
3,986,973	+		DDA3937_RS17530	0.75	-2.0
3,986,973	+		DDA3937_RS17530	0.75	+7.4
3,986,973	+		DDA3937_RS17530	0.75	-0.8
3,986,974	-		DDA3937_RS17530	0.75	+2.3
3,986,974	-		DDA3937_RS17530	0.75	-0.2
3,986,974	-		DDA3937_RS17530	0.75	-0.9
3,986,974	-		DDA3937_RS17530	0.75	-1.9
3,986,974	-		DDA3937_RS17530	0.75	+0.1
3,986,974	-		DDA3937_RS17530	0.75	-0.8
3,987,015	+		DDA3937_RS17530	0.78	-1.1
3,987,015	+		DDA3937_RS17530	0.78	-0.8
3,987,015	+		DDA3937_RS17530	0.78	-2.9
3,987,015	+		DDA3937_RS17530	0.78	+1.7
3,987,016	-				+2.3
3,987,016	-		DDA3937_RS17530	0.78	-0.4
3,987,016	-		DDA3937_RS17530	0.78	-1.4
3,987,016	-		DDA3937_RS17530	0.78	+1.4
3,987,016	-		DDA3937_RS17530	0.78	-0.5
3,987,016	-		DDA3937_RS17530	0.78	-0.2
3,987,016	-		DDA3937_RS17530	0.78	+1.2
3,987,028	-		DDA3937_RS17530	0.79	-0.6
3,987,028	-		DDA3937_RS17530	0.79	-1.4
3,987,028	-		DDA3937_RS17530	0.79	-0.3
3,987,066	+		DDA3937_RS17530	0.82	-1.3
3,987,066	+		DDA3937_RS17530	0.82	-0.5
3,987,136	+		DDA3937_RS17530	0.87	-0.1
3,987,265	+				+0.7
3,987,266	-				+2.5
3,987,290	+				+0.4
3,987,290	+				-0.7
3,987,290	+				-2.0
3,987,350	+				-0.6
3,987,350	+				+1.4
3,987,354	+				-0.9
3,987,355	-				-1.1
3,987,355	-				+0.4
3,987,373	+				-1.3
3,987,374	-				-0.5
3,987,404	+				+1.7
3,987,425	-				-1.2
3,987,496	+				-1.0
3,987,496	+				-0.3
3,987,501	+				-0.9
3,987,501	+				+1.3
3,987,501	+				+2.2
3,987,501	+				-0.8
3,987,502	-				+1.7
3,987,502	-				+0.1
3,987,502	-				-0.7
3,987,502	-				-0.7
3,987,550	+				-1.9
3,987,550	+				-0.0
3,987,550	+				-0.7
3,987,550	+				+0.4
3,987,550	+				-1.4
3,987,550	+				+1.5
3,987,550	+				+1.7
3,987,550	+				-0.7
3,987,550	+				-0.3
3,987,551	-				-0.1
3,987,551	-				-0.9
3,987,551	-				-1.2
3,987,555	+				-1.1
3,987,555	+				+0.7
3,987,608	+				-0.3
3,987,608	+				-1.4
3,987,608	+				+0.9
3,987,609	-				+0.0
3,987,609	-				-1.1
3,987,609	-				-1.3
3,987,609	-				-1.9
3,987,650	+				-1.5
3,987,650	+				+0.9
3,987,650	+				+2.7
3,987,650	+				+0.1
3,987,651	-				+0.1
3,987,651	-				+1.3
3,987,651	-				-0.9
3,987,651	-				-1.6
3,987,686	+				+0.7
3,987,686	+				+0.4
3,987,686	+				-0.2
3,987,686	+				-0.3
3,987,686	+				-1.9
3,987,686	+				-1.3
3,987,686	+				+1.1
3,987,687	-				-0.8
3,987,687	-				+1.9
3,987,687	-				+1.1
3,987,687	-				+0.3
3,987,687	-				-0.3
3,987,690	+				+1.3
3,987,690	+				+0.8
3,987,690	+				-2.3
3,987,690	+				+0.0
3,987,690	+				-0.9
3,987,690	+				-0.1
3,987,690	+				-0.4
3,987,690	+				-0.1
3,987,691	-				+0.3
3,987,691	-				-0.4
3,987,691	-				-0.5
3,987,750	-		DDA3937_RS17535	0.13	-0.5
3,987,750	-		DDA3937_RS17535	0.13	+0.1
3,987,750	-		DDA3937_RS17535	0.13	-0.6
3,987,750	-		DDA3937_RS17535	0.13	-0.7
3,987,809	+		DDA3937_RS17535	0.26	-0.4
3,987,810	-		DDA3937_RS17535	0.26	+0.7
3,987,810	-		DDA3937_RS17535	0.26	+0.1
3,987,810	-		DDA3937_RS17535	0.26	+2.5
3,987,901	+		DDA3937_RS17535	0.45	-0.9
3,987,902	-		DDA3937_RS17535	0.45	-1.2
3,987,902	-		DDA3937_RS17535	0.45	-1.3
3,987,902	-		DDA3937_RS17535	0.45	+0.8
3,987,902	-		DDA3937_RS17535	0.45	-1.2
3,987,931	+		DDA3937_RS17535	0.51	+1.1
3,987,932	-		DDA3937_RS17535	0.51	-0.9
3,987,932	-		DDA3937_RS17535	0.51	+1.9
3,987,932	-		DDA3937_RS17535	0.51	+0.1
3,988,005	+		DDA3937_RS17535	0.67	-0.3
3,988,005	+		DDA3937_RS17535	0.67	-2.0
3,988,005	+		DDA3937_RS17535	0.67	-0.9
3,988,005	+		DDA3937_RS17535	0.67	-1.6
3,988,005	+		DDA3937_RS17535	0.67	+1.0
3,988,005	+				+0.1
3,988,006	-		DDA3937_RS17535	0.67	-1.0
3,988,006	-		DDA3937_RS17535	0.67	-1.3
3,988,006	-		DDA3937_RS17535	0.67	+0.5
3,988,012	+		DDA3937_RS17535	0.68	-0.2
3,988,013	-		DDA3937_RS17535	0.68	+0.2
3,988,013	-		DDA3937_RS17535	0.68	-0.4
3,988,013	-		DDA3937_RS17535	0.68	+0.7
3,988,199	+				-1.9
3,988,203	+				+1.1
3,988,203	+				-1.7
3,988,203	+				-0.1
3,988,204	-				-0.3
3,988,204	-				+0.6
3,988,249	+				-0.3
3,988,250	-				+0.3
3,988,257	-				+2.1
3,988,306	-				+0.7
3,988,343	+				-1.4
3,988,344	-				-0.3
3,988,344	-				-0.8
3,988,344	-				+1.0
3,988,386	+				+1.3
3,988,386	+				+0.1
3,988,386	+				-0.0
3,988,387	-				+0.9
3,988,464	+				-1.0
3,988,464	+				-0.1
3,988,464	+				-1.3
3,988,465	-				+1.5
3,988,465	-				-2.1
3,988,465	-				+0.1
3,988,465	-				+1.0
3,988,510	-		DDA3937_RS17540	0.16	-0.4
3,988,573	+		DDA3937_RS17540	0.26	-0.2
3,988,627	+		DDA3937_RS17540	0.35	-1.5
3,988,631	-		DDA3937_RS17540	0.35	-1.1
3,988,631	-		DDA3937_RS17540	0.35	-0.1
3,988,647	+		DDA3937_RS17540	0.38	-0.6
3,988,647	+		DDA3937_RS17540	0.38	+0.1
3,988,742	+		DDA3937_RS17540	0.53	+1.4
3,988,754	-		DDA3937_RS17540	0.55	-0.1
3,988,780	-		DDA3937_RS17540	0.60	-1.3
3,988,802	+		DDA3937_RS17540	0.63	+0.4
3,988,802	+		DDA3937_RS17540	0.63	-0.5
3,988,803	-		DDA3937_RS17540	0.63	-1.1
3,988,803	-		DDA3937_RS17540	0.63	-0.0
3,988,803	-		DDA3937_RS17540	0.63	+0.2
3,988,836	+		DDA3937_RS17540	0.69	-0.5
3,988,837	-		DDA3937_RS17540	0.69	+0.5
3,988,849	+		DDA3937_RS17540	0.71	-0.8
3,988,849	+		DDA3937_RS17540	0.71	-0.0
3,988,850	-		DDA3937_RS17540	0.71	+0.1
3,988,853	+		DDA3937_RS17540	0.71	-0.7
3,988,854	-		DDA3937_RS17540	0.72	-0.9
3,988,854	-		DDA3937_RS17540	0.72	-0.8
3,988,860	+		DDA3937_RS17540	0.73	-0.9
3,988,861	-		DDA3937_RS17540	0.73	+0.2
3,988,904	+		DDA3937_RS17540	0.80	-0.0
3,988,904	+		DDA3937_RS17540	0.80	-1.6
3,988,904	+		DDA3937_RS17540	0.80	-0.4
3,988,904	+				+0.7
3,988,905	-		DDA3937_RS17540	0.80	+0.2
3,988,905	-		DDA3937_RS17540	0.80	+1.1
3,988,935	-		DDA3937_RS17540	0.85	+0.2
3,988,941	-		DDA3937_RS17540	0.86	-0.8
3,989,019	+				-0.8
3,989,019	+				+0.7
3,989,019	+				-1.7
3,989,020	-				-1.5
3,989,020	-				-0.2
3,989,020	-				+0.1
3,989,026	+				-1.5
3,989,027	-				+1.7
3,989,027	-				-0.1
3,989,027	-				-1.2
3,989,054	+				-0.3
3,989,054	+				-1.5
3,989,054	+				-0.6
3,989,056	+				-2.0
3,989,056	+				-0.8
3,989,056	+				-0.6
3,989,099	-				-1.2