Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS17190

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,918,044	+		DDA3937_RS17185	0.56	+0.8
3,918,044	+		DDA3937_RS17185	0.56	-0.7
3,918,044	+		DDA3937_RS17185	0.56	+0.1
3,918,044	+		DDA3937_RS17185	0.56	-1.1
3,918,044	+		DDA3937_RS17185	0.56	-0.2
3,918,044	+		DDA3937_RS17185	0.56	-1.0
3,918,044	+		DDA3937_RS17185	0.56	-3.5
3,918,044	+		DDA3937_RS17185	0.56	+1.2
3,918,044	+		DDA3937_RS17185	0.56	-1.3
3,918,044	+		DDA3937_RS17185	0.56	+0.0
3,918,044	+		DDA3937_RS17185	0.56	-1.3
3,918,044	+		DDA3937_RS17185	0.56	-1.2
3,918,044	+		DDA3937_RS17185	0.56	+1.5
3,918,044	+		DDA3937_RS17185	0.56	+0.4
3,918,044	+		DDA3937_RS17185	0.56	-0.4
3,918,044	+		DDA3937_RS17185	0.56	-0.1
3,918,045	-		DDA3937_RS17185	0.56	+0.7
3,918,045	-		DDA3937_RS17185	0.56	+0.4
3,918,045	-		DDA3937_RS17185	0.56	-0.1
3,918,045	-		DDA3937_RS17185	0.56	-0.1
3,918,045	-		DDA3937_RS17185	0.56	-1.1
3,918,045	-		DDA3937_RS17185	0.56	-0.9
3,918,045	-		DDA3937_RS17185	0.56	-0.6
3,918,045	-		DDA3937_RS17185	0.56	-1.0
3,918,045	-		DDA3937_RS17185	0.56	-0.8
3,918,045	-		DDA3937_RS17185	0.56	-0.3
3,918,045	-		DDA3937_RS17185	0.56	+0.1
3,918,045	-		DDA3937_RS17185	0.56	-1.3
3,918,045	-		DDA3937_RS17185	0.56	-0.7
3,918,045	-		DDA3937_RS17185	0.56	-1.3
3,918,045	-		DDA3937_RS17185	0.56	-0.9
3,918,045	-		DDA3937_RS17185	0.56	+0.4
3,918,045	-		DDA3937_RS17185	0.56	-0.8
3,918,045	-		DDA3937_RS17185	0.56	+0.2
3,918,045	-		DDA3937_RS17185	0.56	+0.1
3,918,045	-		DDA3937_RS17185	0.56	-0.6
3,918,045	-		DDA3937_RS17185	0.56	-0.3
3,918,045	-		DDA3937_RS17185	0.56	-2.4
3,918,045	-		DDA3937_RS17185	0.56	-0.6
3,918,045	-		DDA3937_RS17185	0.56	+0.5
3,918,050	+		DDA3937_RS17185	0.56	+0.5
3,918,050	+		DDA3937_RS17185	0.56	-0.6
3,918,050	+		DDA3937_RS17185	0.56	+1.7
3,918,050	+		DDA3937_RS17185	0.56	-2.2
3,918,050	+		DDA3937_RS17185	0.56	-0.5
3,918,050	+		DDA3937_RS17185	0.56	-1.2
3,918,051	-		DDA3937_RS17185	0.56	+1.3
3,918,051	-		DDA3937_RS17185	0.56	-1.7
3,918,051	-		DDA3937_RS17185	0.56	-0.6
3,918,051	-		DDA3937_RS17185	0.56	-1.1
3,918,125	-				+2.3
3,918,125	-		DDA3937_RS17185	0.60	-1.1
3,918,125	-		DDA3937_RS17185	0.60	-0.6
3,918,215	+		DDA3937_RS17185	0.65	-2.0
3,918,215	+		DDA3937_RS17185	0.65	-0.3
3,918,216	-				+1.4
3,918,216	-		DDA3937_RS17185	0.65	+2.0
3,918,216	-		DDA3937_RS17185	0.65	-0.2
3,918,216	-		DDA3937_RS17185	0.65	-0.4
3,918,266	+		DDA3937_RS17185	0.67	+0.7
3,918,273	-		DDA3937_RS17185	0.68	+0.4
3,918,294	+		DDA3937_RS17185	0.69	-1.2
3,918,294	+		DDA3937_RS17185	0.69	+1.7
3,918,294	+		DDA3937_RS17185	0.69	-2.1
3,918,295	-		DDA3937_RS17185	0.69	+1.1
3,918,301	-		DDA3937_RS17185	0.69	+2.7
3,918,413	+		DDA3937_RS17185	0.75	+5.2
3,918,443	+		DDA3937_RS17185	0.76	-0.2
3,918,444	-		DDA3937_RS17185	0.77	-1.7
3,918,450	+		DDA3937_RS17185	0.77	+0.4
3,918,450	+		DDA3937_RS17185	0.77	-0.6
3,918,450	+		DDA3937_RS17185	0.77	-1.6
3,918,584	+		DDA3937_RS17185	0.84	-2.2
3,918,674	+		DDA3937_RS17185	0.88	-0.6
3,918,674	+		DDA3937_RS17185	0.88	-0.6
3,918,674	+		DDA3937_RS17185	0.88	+0.3
3,918,674	+		DDA3937_RS17185	0.88	-2.0
3,918,674	+		DDA3937_RS17185	0.88	-0.2
3,918,675	-		DDA3937_RS17185	0.88	+0.1
3,918,675	-		DDA3937_RS17185	0.88	-0.1
3,918,676	+		DDA3937_RS17185	0.88	-1.5
3,918,676	+		DDA3937_RS17185	0.88	+0.8
3,918,676	+		DDA3937_RS17185	0.88	+0.0
3,918,677	-		DDA3937_RS17185	0.88	-1.0
3,918,708	+				+0.1
3,918,709	-				-0.6
3,918,875	+				-0.1
3,918,876	-				-3.2
3,918,888	+				-1.1
3,918,900	-				+0.1
3,918,973	+				-0.2
3,918,973	+				+1.2
3,918,974	-				+1.3
3,918,974	-				-2.6
3,918,974	-				+0.1
3,918,974	-				+0.0
3,918,974	-				-0.4
3,918,974	-				+0.4
3,918,974	-				-0.6
3,918,974	-				-0.8
3,919,011	+				-0.9
3,919,012	-				-0.4
3,919,339	+		DDA3937_RS17190	0.46	+0.5
3,919,469	+		DDA3937_RS17190	0.65	-0.5
3,919,608	+		DDA3937_RS17190	0.86	-0.4
3,919,608	+		DDA3937_RS17190	0.86	-0.1
3,919,608	+		DDA3937_RS17190	0.86	-0.9
3,919,609	-		DDA3937_RS17190	0.86	-0.8
3,919,609	-		DDA3937_RS17190	0.86	-0.2
3,919,609	-		DDA3937_RS17190	0.86	+6.1
3,919,609	-		DDA3937_RS17190	0.86	-0.8
3,919,609	-		DDA3937_RS17190	0.86	-0.9
3,919,609	-		DDA3937_RS17190	0.86	-0.6
3,919,611	-		DDA3937_RS17190	0.86	+0.4
3,919,628	+		DDA3937_RS17190	0.89	+0.1
3,919,649	+				-0.6
3,919,649	+				-0.5
3,919,649	+				-0.4
3,919,650	-				+0.9
3,919,650	-				-0.2
3,919,650	-				-0.9
3,919,650	-				+0.1
3,919,650	-				-1.1
3,919,650	-				+1.7
3,919,736	+				-0.4
3,919,736	+				+1.7
3,919,736	+				-0.5
3,919,736	+				-0.6
3,919,774	-				-2.1
3,919,786	-				+0.5
3,919,800	+				+2.1
3,919,917	+		DDA3937_RS17195	0.21	-0.6
3,919,924	+		DDA3937_RS17195	0.23	-0.4
3,919,924	+		DDA3937_RS17195	0.23	-2.0
3,919,924	+				+1.7
3,919,924	+		DDA3937_RS17195	0.23	-0.2
3,919,924	+		DDA3937_RS17195	0.23	-0.4
3,919,925	-		DDA3937_RS17195	0.23	-1.1
3,919,925	-		DDA3937_RS17195	0.23	-0.5
3,919,925	-		DDA3937_RS17195	0.23	-0.1
3,919,978	+		DDA3937_RS17195	0.38	+0.1
3,919,978	+		DDA3937_RS17195	0.38	+0.0
3,919,981	+		DDA3937_RS17195	0.39	-0.7
3,919,981	+		DDA3937_RS17195	0.39	+0.1
3,919,981	+		DDA3937_RS17195	0.39	-1.8
3,919,981	+		DDA3937_RS17195	0.39	+1.7
3,919,981	+		DDA3937_RS17195	0.39	-0.1
3,919,981	+		DDA3937_RS17195	0.39	+1.7
3,919,982	-		DDA3937_RS17195	0.39	-1.4
3,919,984	+		DDA3937_RS17195	0.40	-0.1
3,919,984	+		DDA3937_RS17195	0.40	-0.4
3,919,984	+		DDA3937_RS17195	0.40	-0.4
3,919,984	+		DDA3937_RS17195	0.40	-0.9
3,919,985	-		DDA3937_RS17195	0.40	-0.3
3,919,985	-		DDA3937_RS17195	0.40	-1.3
3,920,017	+		DDA3937_RS17195	0.49	-0.3
3,920,017	+		DDA3937_RS17195	0.49	-0.9
3,920,017	+		DDA3937_RS17195	0.49	+1.2
3,920,018	-		DDA3937_RS17195	0.49	-1.4
3,920,018	-		DDA3937_RS17195	0.49	-2.7
3,920,024	+		DDA3937_RS17195	0.51	-0.9
3,920,024	+		DDA3937_RS17195	0.51	-0.8
3,920,024	+		DDA3937_RS17195	0.51	-0.5
3,920,024	+		DDA3937_RS17195	0.51	-0.8
3,920,024	+		DDA3937_RS17195	0.51	-0.3
3,920,025	-		DDA3937_RS17195	0.51	+0.5
3,920,025	-		DDA3937_RS17195	0.51	+1.7
3,920,025	-		DDA3937_RS17195	0.51	-0.2
3,920,025	-		DDA3937_RS17195	0.51	-0.6
3,920,057	-		DDA3937_RS17195	0.60	-1.1
3,920,057	-		DDA3937_RS17195	0.60	-0.4
3,920,059	+		DDA3937_RS17195	0.61	+0.5
3,920,092	+		DDA3937_RS17195	0.70	-0.7
3,920,093	-		DDA3937_RS17195	0.71	-0.3
3,920,093	-		DDA3937_RS17195	0.71	+0.2
3,920,093	-		DDA3937_RS17195	0.71	+0.3
3,920,093	-		DDA3937_RS17195	0.71	-0.6
3,920,093	-		DDA3937_RS17195	0.71	+2.8
3,920,093	-		DDA3937_RS17195	0.71	-1.5
3,920,154	+		DDA3937_RS17195	0.88	-0.3
3,920,155	-		DDA3937_RS17195	0.88	+0.8
3,920,155	-		DDA3937_RS17195	0.88	+0.4
3,920,155	-		DDA3937_RS17195	0.88	+1.4
3,920,155	-		DDA3937_RS17195	0.88	-2.2
3,920,165	+				+0.9
3,920,176	-				-0.8
3,920,176	-				+0.5
3,920,178	+				-2.0
3,920,179	-				+0.9
3,920,189	+				+1.9
3,920,189	+				+1.6
3,920,189	+				+0.2
3,920,190	-				+0.7
3,920,190	-				+0.6
3,920,195	+				+0.9
3,920,195	+				-0.8
3,920,195	+				+0.1
3,920,195	+				+0.2
3,920,195	+				-0.3
3,920,196	-				-0.8
3,920,196	-				-0.9
3,920,201	+				+2.4
3,920,201	+				-0.6
3,920,239	+				+3.2
3,920,239	+				-1.0
3,920,240	-				-0.9
3,920,240	-				+3.3
3,920,240	-				+0.0
3,920,240	-				+1.0
3,920,240	-				-0.1
3,920,240	-				-0.6
3,920,282	+				-2.5
3,920,282	+				-0.6
3,920,282	+				+0.1
3,920,283	-				-0.9
3,920,283	-				-1.1
3,920,283	-				-0.0
3,920,283	-				+2.0
3,920,283	-				-1.9
3,920,288	+				+0.1
3,920,289	-				+0.9
3,920,373	-				-2.1
3,920,458	+				-0.6
3,920,478	+				+0.8
3,920,479	-				-0.7
3,920,479	-				+1.7
3,920,497	+				-0.9
3,920,498	-				-0.4
3,920,498	-				-0.8
3,920,498	-				-1.6
3,920,499	+				-1.5
3,920,516	+				-1.3
3,920,516	+				-1.2
3,920,516	+				+0.7
3,920,517	-				-0.6
3,920,517	-				-0.3
3,920,517	-				-1.0
3,920,623	+				-1.2
3,920,623	+				+1.0
3,920,624	-				-1.5
3,920,668	+		DDA3937_RS17200	0.16	+0.9
3,920,668	+		DDA3937_RS17200	0.16	+0.2
3,920,668	+		DDA3937_RS17200	0.16	-1.0
3,920,668	+		DDA3937_RS17200	0.16	-1.4
3,920,669	-		DDA3937_RS17200	0.16	-2.8
3,920,669	-		DDA3937_RS17200	0.16	-1.1
3,920,669	-		DDA3937_RS17200	0.16	-0.2
3,920,670	+		DDA3937_RS17200	0.16	-0.4
3,920,670	+		DDA3937_RS17200	0.16	-1.3
3,920,670	+		DDA3937_RS17200	0.16	+0.0
3,920,670	+		DDA3937_RS17200	0.16	+1.1
3,920,670	+		DDA3937_RS17200	0.16	-0.5
3,920,670	+		DDA3937_RS17200	0.16	-0.7
3,920,671	-		DDA3937_RS17200	0.16	-1.3
3,920,671	-		DDA3937_RS17200	0.16	+0.2
3,920,671	-		DDA3937_RS17200	0.16	-0.2
3,920,671	-		DDA3937_RS17200	0.16	+0.2