Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16975

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,858,076	+		DDA3937_RS16965	0.82	+1.0
3,858,077	-		DDA3937_RS16965	0.82	+1.7
3,858,080	-		DDA3937_RS16965	0.83	-0.7
3,858,123	+				-0.9
3,858,199	+				-1.8
3,858,200	-				-0.7
3,858,200	-				-1.1
3,858,200	-				+0.3
3,858,563	+		DDA3937_RS16970	0.57	-0.8
3,858,564	-		DDA3937_RS16970	0.57	+1.0
3,858,605	-		DDA3937_RS16970	0.63	-1.1
3,858,605	-		DDA3937_RS16970	0.63	-0.4
3,858,605	-		DDA3937_RS16970	0.63	-0.3
3,858,677	+		DDA3937_RS16970	0.74	+1.0
3,858,749	+		DDA3937_RS16970	0.84	-0.4
3,858,749	+		DDA3937_RS16970	0.84	+1.1
3,858,749	+		DDA3937_RS16970	0.84	-0.9
3,858,750	-		DDA3937_RS16970	0.84	-0.4
3,858,886	+				-0.7
3,858,887	-				+0.3
3,858,887	-				-1.1
3,858,931	-				-0.7
3,858,983	+				-0.7
3,859,004	+				-0.9
3,859,004	+				-0.2
3,859,005	-				-1.1
3,859,012	+				+0.6
3,859,012	+				+0.1
3,859,012	+				+1.7
3,859,012	+				+0.8
3,859,013	-				+0.3
3,859,013	-				-2.4
3,859,013	-				-0.3
3,859,013	-				+0.5
3,859,018	+				-0.9
3,859,031	+				-1.6
3,859,031	+				-0.6
3,859,032	-				+1.3
3,859,038	-				-0.8
3,859,038	-				-0.6
3,859,046	-				+0.3
3,859,055	+				-0.8
3,859,055	+				+0.0
3,859,055	+				+0.1
3,859,056	-				-1.1
3,859,056	-				-0.2
3,859,067	-				-0.9
3,859,099	+				-0.8
3,859,099	+				+0.0
3,859,100	-				-1.2
3,859,161	+		DDA3937_RS16975	0.10	+1.1
3,859,162	-		DDA3937_RS16975	0.11	-0.2
3,859,185	+		DDA3937_RS16975	0.13	-1.4
3,859,287	+		DDA3937_RS16975	0.23	-1.7
3,859,288	-		DDA3937_RS16975	0.23	+0.1
3,859,397	+		DDA3937_RS16975	0.35	-1.0
3,859,454	-		DDA3937_RS16975	0.41	-0.4
3,859,516	-		DDA3937_RS16975	0.47	-0.5
3,859,533	+		DDA3937_RS16975	0.49	-1.3
3,859,534	-		DDA3937_RS16975	0.49	+0.2
3,859,534	-		DDA3937_RS16975	0.49	+0.2
3,859,534	-		DDA3937_RS16975	0.49	+0.4
3,859,534	-		DDA3937_RS16975	0.49	+0.7
3,859,534	-		DDA3937_RS16975	0.49	+2.2
3,859,701	-		DDA3937_RS16975	0.66	-1.3
3,859,701	-		DDA3937_RS16975	0.66	+1.1
3,859,712	+		DDA3937_RS16975	0.67	-0.4
3,859,712	+		DDA3937_RS16975	0.67	+0.1
3,859,712	+		DDA3937_RS16975	0.67	+1.8
3,859,713	-		DDA3937_RS16975	0.67	+0.3
3,859,713	-		DDA3937_RS16975	0.67	+1.4
3,860,013	+				-1.8
3,860,013	+				+0.7
3,860,014	-				+0.2
3,860,014	-				+0.8
3,860,014	-				+0.1
3,860,105	+				-1.0
3,860,106	-				+0.3
3,860,111	+				+0.4
3,860,111	+				-0.9
3,860,123	+				-1.8
3,860,192	+				-0.4
3,860,192	+				+0.2
3,860,192	+				+1.2
3,860,193	-				-0.2
3,860,193	-				+2.1
3,860,193	-				-1.4
3,860,315	+				+0.7
3,860,315	+		DDA3937_RS16980	0.19	+0.5
3,860,315	+		DDA3937_RS16980	0.19	-0.7
3,860,316	-		DDA3937_RS16980	0.19	-1.1
3,860,322	+		DDA3937_RS16980	0.19	+0.3
3,860,323	-		DDA3937_RS16980	0.19	-1.2
3,860,346	-		DDA3937_RS16980	0.21	-3.2
3,860,378	+		DDA3937_RS16980	0.24	-1.5
3,860,379	-		DDA3937_RS16980	0.24	-1.7
3,860,379	-		DDA3937_RS16980	0.24	-2.5
3,860,379	-		DDA3937_RS16980	0.24	-0.4
3,860,379	-		DDA3937_RS16980	0.24	-0.0
3,860,403	+		DDA3937_RS16980	0.26	+3.6
3,860,403	+		DDA3937_RS16980	0.26	-0.2
3,860,404	-		DDA3937_RS16980	0.26	-0.2
3,860,404	-		DDA3937_RS16980	0.26	-1.5
3,860,430	-		DDA3937_RS16980	0.29	-0.9
3,860,663	+		DDA3937_RS16980	0.49	-0.3
3,860,663	+		DDA3937_RS16980	0.49	-1.7
3,860,664	-		DDA3937_RS16980	0.49	+0.4
3,860,664	-		DDA3937_RS16980	0.49	+0.1
3,860,777	+		DDA3937_RS16980	0.59	+1.7
3,860,778	-		DDA3937_RS16980	0.59	-0.3
3,860,778	-		DDA3937_RS16980	0.59	-0.3
3,860,785	-		DDA3937_RS16980	0.60	-2.0
3,860,785	-		DDA3937_RS16980	0.60	-0.5
3,860,785	-		DDA3937_RS16980	0.60	-1.7
3,860,822	+		DDA3937_RS16980	0.63	+3.6
3,860,822	+		DDA3937_RS16980	0.63	+0.2
3,860,822	+		DDA3937_RS16980	0.63	+0.1
3,860,822	+		DDA3937_RS16980	0.63	-0.4
3,860,822	+		DDA3937_RS16980	0.63	-1.2
3,860,822	+		DDA3937_RS16980	0.63	+0.6
3,860,822	+		DDA3937_RS16980	0.63	+0.7
3,860,822	+		DDA3937_RS16980	0.63	+0.2
3,860,822	+		DDA3937_RS16980	0.63	-0.1
3,860,823	-		DDA3937_RS16980	0.63	-0.4
3,860,823	-		DDA3937_RS16980	0.63	-1.7
3,860,823	-		DDA3937_RS16980	0.63	-0.5
3,860,823	-		DDA3937_RS16980	0.63	-1.6
3,860,853	-		DDA3937_RS16980	0.66	-0.4
3,860,914	+		DDA3937_RS16980	0.71	-0.6
3,860,914	+		DDA3937_RS16980	0.71	-0.0
3,860,914	+		DDA3937_RS16980	0.71	+0.3
3,860,914	+		DDA3937_RS16980	0.71	+0.3
3,860,914	+		DDA3937_RS16980	0.71	+0.9
3,860,914	+		DDA3937_RS16980	0.71	+0.9
3,860,915	-		DDA3937_RS16980	0.71	-1.7
3,860,915	-		DDA3937_RS16980	0.71	-0.2
3,860,915	-		DDA3937_RS16980	0.71	-0.3
3,860,915	-		DDA3937_RS16980	0.71	+0.4
3,860,915	-		DDA3937_RS16980	0.71	+1.1
3,860,979	+		DDA3937_RS16980	0.77	-1.0
3,861,014	+		DDA3937_RS16980	0.80	+2.0
3,861,014	+		DDA3937_RS16980	0.80	-0.5
3,861,014	+		DDA3937_RS16980	0.80	-0.9
3,861,015	-		DDA3937_RS16980	0.80	-0.9
3,861,020	+		DDA3937_RS16980	0.80	+0.3
3,861,020	+		DDA3937_RS16980	0.80	-0.3
3,861,020	+		DDA3937_RS16980	0.80	-0.5
3,861,020	+		DDA3937_RS16980	0.80	+0.9
3,861,020	+		DDA3937_RS16980	0.80	-1.9
3,861,021	-		DDA3937_RS16980	0.80	-1.0
3,861,021	-		DDA3937_RS16980	0.80	+0.1
3,861,030	-		DDA3937_RS16980	0.81	-0.1