Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS16195

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,694,554	+		DDA3937_RS16185	0.73	+1.9
3,694,554	+		DDA3937_RS16185	0.73	+8.0
3,694,554	+		DDA3937_RS16185	0.73	-1.5
3,694,555	-		DDA3937_RS16185	0.73	-0.5
3,694,555	-		DDA3937_RS16185	0.73	+0.0
3,694,555	-		DDA3937_RS16185	0.73	-0.1
3,694,558	+		DDA3937_RS16185	0.74	-0.7
3,694,558	+		DDA3937_RS16185	0.74	+1.3
3,694,558	+		DDA3937_RS16185	0.74	+1.2
3,694,558	+		DDA3937_RS16185	0.74	-2.6
3,694,558	+		DDA3937_RS16185	0.74	+2.9
3,694,558	+		DDA3937_RS16185	0.74	-0.4
3,694,558	+		DDA3937_RS16185	0.74	+0.6
3,694,559	-		DDA3937_RS16185	0.74	-1.1
3,694,559	-		DDA3937_RS16185	0.74	-1.5
3,694,559	-		DDA3937_RS16185	0.74	-1.0
3,694,559	-		DDA3937_RS16185	0.74	+0.8
3,694,559	-		DDA3937_RS16185	0.74	-0.6
3,694,559	-		DDA3937_RS16185	0.74	+1.4
3,694,559	-		DDA3937_RS16185	0.74	-1.2
3,694,559	-		DDA3937_RS16185	0.74	+2.5
3,694,559	-		DDA3937_RS16185	0.74	-1.6
3,694,559	-		DDA3937_RS16185	0.74	+2.3
3,694,581	+		DDA3937_RS16185	0.76	+0.0
3,694,630	+		DDA3937_RS16185	0.83	+0.5
3,694,654	+		DDA3937_RS16185	0.86	-1.8
3,694,655	-		DDA3937_RS16185	0.86	+0.1
3,694,726	+				+0.6
3,694,726	+				+1.0
3,694,726	+				+0.6
3,694,727	-				-0.3
3,694,727	-				-0.3
3,694,782	+				-0.7
3,694,783	-				-0.4
3,694,791	+				+3.1
3,694,792	-				+0.6
3,694,792	-				+0.9
3,694,830	+				+1.4
3,694,848	+				-0.3
3,694,848	+				-1.2
3,694,848	+				-0.5
3,694,848	+				-0.6
3,694,848	+				+0.2
3,694,848	+				-1.0
3,694,848	+				+1.5
3,694,849	-				+0.1
3,694,849	-				+0.8
3,694,849	-				-0.4
3,694,849	-				-1.0
3,694,849	-				-0.6
3,694,849	-				+0.6
3,694,849	-				+2.9
3,694,984	+		DDA3937_RS16190	0.24	-1.7
3,694,984	+		DDA3937_RS16190	0.24	+1.4
3,694,984	+		DDA3937_RS16190	0.24	+1.0
3,694,984	+		DDA3937_RS16190	0.24	-0.5
3,694,985	-		DDA3937_RS16190	0.24	-1.4
3,694,985	-				+1.6
3,694,999	+		DDA3937_RS16190	0.27	-0.5
3,694,999	+		DDA3937_RS16190	0.27	+0.2
3,695,000	-		DDA3937_RS16190	0.27	-0.2
3,695,000	-				-0.4
3,695,022	-		DDA3937_RS16190	0.31	-0.2
3,695,040	-		DDA3937_RS16190	0.35	-0.1
3,695,040	-		DDA3937_RS16190	0.35	-0.6
3,695,040	-		DDA3937_RS16190	0.35	+2.1
3,695,040	-		DDA3937_RS16190	0.35	-0.2
3,695,040	-		DDA3937_RS16190	0.35	-1.7
3,695,113	+		DDA3937_RS16190	0.49	+0.0
3,695,113	+		DDA3937_RS16190	0.49	-0.7
3,695,114	-		DDA3937_RS16190	0.49	-0.3
3,695,135	+		DDA3937_RS16190	0.53	-1.0
3,695,144	+		DDA3937_RS16190	0.55	-0.2
3,695,144	+		DDA3937_RS16190	0.55	-0.8
3,695,144	+		DDA3937_RS16190	0.55	+2.0
3,695,247	-		DDA3937_RS16190	0.75	+0.4
3,695,342	+				-1.2
3,695,343	-				-1.0
3,695,354	+				-0.6
3,695,354	+				+0.4
3,695,355	-				-0.9
3,695,355	-				-2.6
3,695,360	+				+3.2
3,695,360	+				-1.8
3,695,360	+				-0.2
3,695,361	-				-1.7
3,695,361	-				+1.0
3,695,364	+				-0.6
3,695,364	+				-0.4
3,695,364	+				-0.4
3,695,365	-				-0.1
3,695,365	-				-0.6
3,695,365	-				-0.4
3,695,365	-				-1.7
3,695,365	-				+0.3
3,695,365	-				-1.5
3,695,365	-				-0.2
3,695,367	+				-1.4
3,695,367	+				-0.4
3,695,368	-				+0.0
3,695,368	-				+0.2
3,695,442	+				-0.3
3,695,442	+				+0.3
3,695,443	-				-2.1
3,695,464	+				+1.3
3,695,465	-				-2.2
3,695,465	-				-0.4
3,695,465	-				+1.2
3,695,479	+				+0.1
3,695,479	+				-0.7
3,695,550	+				-1.8
3,695,565	+				-0.3
3,695,565	+				-2.8
3,695,565	+				-1.6
3,695,566	-				-0.9
3,695,584	+				-1.3
3,695,584	+				+2.1
3,695,584	+				+0.5
3,695,584	+				+1.6
3,695,584	+				-1.3
3,695,584	+				-0.5
3,695,584	+				-0.2
3,695,585	-				-1.5
3,695,585	-				-1.0
3,695,585	-				-0.9
3,695,585	-				-1.1
3,695,585	-				+0.3
3,695,585	-				+1.4
3,695,585	-				+0.8
3,695,638	+				+0.6
3,695,930	+		DDA3937_RS16195	0.25	-1.0
3,696,124	+		DDA3937_RS16195	0.37	-1.3
3,696,204	+		DDA3937_RS16195	0.42	-1.4
3,696,205	-		DDA3937_RS16195	0.42	-0.4
3,696,207	-		DDA3937_RS16195	0.42	-1.0
3,696,327	+		DDA3937_RS16195	0.50	-0.2
3,696,544	-		DDA3937_RS16195	0.64	-0.3
3,696,605	-		DDA3937_RS16195	0.68	+0.6
3,696,650	-				+2.6
3,696,877	+		DDA3937_RS16195	0.85	+1.6
3,696,931	+		DDA3937_RS16195	0.89	-1.7
3,697,089	-				-0.4
3,697,126	+				-1.0
3,697,127	-				-0.7
3,697,136	-				-0.4
3,697,136	-				+0.6
3,697,136	-				-0.8
3,697,138	+				+0.0
3,697,139	-				-2.4
3,697,154	+				+0.9
3,697,154	+				-0.5
3,697,154	+				+0.4
3,697,154	+				+0.3
3,697,154	+				-1.4
3,697,154	+				+1.6
3,697,154	+				-0.8
3,697,155	-				-1.2
3,697,155	-				-0.8
3,697,155	-				+0.9
3,697,155	-				-1.4
3,697,155	-				-0.5
3,697,155	-				-1.8
3,697,155	-				+1.5
3,697,155	-				+1.0
3,697,156	+				+1.2
3,697,156	+				-1.5
3,697,156	+				-2.0
3,697,156	+				-0.8
3,697,156	+				+0.0
3,697,157	-				-1.9
3,697,157	-				-1.2
3,697,157	-				+4.0
3,697,157	-				-0.7
3,697,157	-				-1.3
3,697,168	-				-1.2
3,697,177	+				-1.1
3,697,177	+				+1.2
3,697,177	+				-1.0
3,697,177	+				-0.1
3,697,178	-				-0.2
3,697,222	+				+1.0
3,697,222	+				-0.1
3,697,222	+				-0.8
3,697,222	+				+1.0
3,697,223	-				-0.2
3,697,223	-				-1.4
3,697,223	-				-1.3
3,697,226	-		DDA3937_RS16200	0.10	+1.0
3,697,226	-		DDA3937_RS16200	0.10	-1.1
3,697,226	-		DDA3937_RS16200	0.10	-0.9
3,697,226	-		DDA3937_RS16200	0.10	-1.7
3,697,232	+		DDA3937_RS16200	0.11	-0.4
3,697,257	+		DDA3937_RS16200	0.17	-0.8
3,697,258	-		DDA3937_RS16200	0.17	-0.4
3,697,258	-		DDA3937_RS16200	0.17	+0.6
3,697,258	-		DDA3937_RS16200	0.17	-0.6
3,697,258	-		DDA3937_RS16200	0.17	-0.4
3,697,261	+		DDA3937_RS16200	0.18	+0.3
3,697,262	-		DDA3937_RS16200	0.18	+0.0
3,697,262	-				+0.0
3,697,262	-		DDA3937_RS16200	0.18	-0.9
3,697,264	+		DDA3937_RS16200	0.19	+0.0
3,697,264	+		DDA3937_RS16200	0.19	-0.2
3,697,265	-		DDA3937_RS16200	0.19	-0.7
3,697,265	-		DDA3937_RS16200	0.19	-0.1
3,697,288	+		DDA3937_RS16200	0.24	-1.2
3,697,312	+		DDA3937_RS16200	0.30	+0.3
3,697,312	+		DDA3937_RS16200	0.30	+0.9
3,697,312	+		DDA3937_RS16200	0.30	+1.1
3,697,312	+				+0.6
3,697,313	-		DDA3937_RS16200	0.30	-1.2
3,697,313	-		DDA3937_RS16200	0.30	-1.4
3,697,313	-		DDA3937_RS16200	0.30	-1.4
3,697,313	-		DDA3937_RS16200	0.30	+0.6
3,697,313	-		DDA3937_RS16200	0.30	-0.9
3,697,313	-		DDA3937_RS16200	0.30	-2.0
3,697,313	-		DDA3937_RS16200	0.30	+0.2
3,697,313	-		DDA3937_RS16200	0.30	-0.3
3,697,313	-		DDA3937_RS16200	0.30	+0.5
3,697,313	-		DDA3937_RS16200	0.30	+0.5
3,697,315	-		DDA3937_RS16200	0.31	-0.5
3,697,338	+		DDA3937_RS16200	0.36	-1.0
3,697,338	+		DDA3937_RS16200	0.36	+0.0
3,697,339	-		DDA3937_RS16200	0.36	-0.1
3,697,345	+		DDA3937_RS16200	0.38	+0.4
3,697,345	+		DDA3937_RS16200	0.38	-0.5
3,697,346	-		DDA3937_RS16200	0.38	+0.2
3,697,407	+		DDA3937_RS16200	0.52	+0.7
3,697,408	-		DDA3937_RS16200	0.52	+0.3
3,697,437	+		DDA3937_RS16200	0.59	-0.4
3,697,437	+		DDA3937_RS16200	0.59	-1.2
3,697,437	+		DDA3937_RS16200	0.59	-0.4
3,697,438	-		DDA3937_RS16200	0.59	+1.9
3,697,458	+		DDA3937_RS16200	0.64	+0.2
3,697,458	+		DDA3937_RS16200	0.64	+0.1
3,697,459	-		DDA3937_RS16200	0.64	-0.6
3,697,459	-		DDA3937_RS16200	0.64	-0.1
3,697,459	-		DDA3937_RS16200	0.64	-1.0
3,697,459	-		DDA3937_RS16200	0.64	-0.7
3,697,459	-		DDA3937_RS16200	0.64	+0.3
3,697,459	-		DDA3937_RS16200	0.64	-0.9
3,697,459	-		DDA3937_RS16200	0.64	-0.2
3,697,462	-		DDA3937_RS16200	0.65	+0.4
3,697,476	+		DDA3937_RS16200	0.68	+0.2
3,697,620	+				+0.8
3,697,621	-				-1.3
3,697,751	+		DDA3937_RS16205	0.25	+1.6
3,697,752	-		DDA3937_RS16205	0.25	-0.5
3,697,879	+		DDA3937_RS16205	0.48	-1.1
3,697,879	+		DDA3937_RS16205	0.48	+3.4
3,697,914	+		DDA3937_RS16205	0.54	-1.2
3,697,914	+		DDA3937_RS16205	0.54	-1.7
3,697,915	-		DDA3937_RS16205	0.54	-1.7
3,697,915	-		DDA3937_RS16205	0.54	+0.5
3,697,915	-		DDA3937_RS16205	0.54	+0.2
3,697,915	-		DDA3937_RS16205	0.54	-0.4
3,697,915	-		DDA3937_RS16205	0.54	-1.8
3,697,915	-		DDA3937_RS16205	0.54	-0.6
3,697,968	-		DDA3937_RS16205	0.63	-0.8
3,698,062	+		DDA3937_RS16205	0.80	+1.0
3,698,063	-		DDA3937_RS16205	0.80	-2.3
3,698,063	-				-0.7
3,698,069	+		DDA3937_RS16205	0.81	-0.6
3,698,069	+		DDA3937_RS16205	0.81	-1.2
3,698,070	-		DDA3937_RS16205	0.81	+0.2
3,698,070	-		DDA3937_RS16205	0.81	+0.0
3,698,070	-		DDA3937_RS16205	0.81	-0.7
3,698,074	+		DDA3937_RS16205	0.82	-0.2
3,698,074	+		DDA3937_RS16205	0.82	-0.1
3,698,074	+		DDA3937_RS16205	0.82	-1.6
3,698,085	+		DDA3937_RS16205	0.84	+0.0
3,698,086	-		DDA3937_RS16205	0.84	+1.0
3,698,086	-		DDA3937_RS16205	0.84	-0.7