Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS15305

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,513,027	+				-0.6
3,513,027	+				-0.4
3,513,027	+				-0.8
3,513,027	+				+0.8
3,513,027	+				-1.2
3,513,028	-				-0.4
3,513,028	-				+0.6
3,513,028	-				-0.3
3,513,028	-				-0.4
3,513,060	+				+0.6
3,513,061	-				-1.1
3,513,061	-				+0.8
3,513,078	-				-1.2
3,513,186	+				-1.6
3,513,197	+				-1.3
3,513,197	+				-0.8
3,513,198	-				-0.5
3,513,198	-				-0.8
3,513,230	+				-1.4
3,513,231	-				-0.5
3,513,236	+				-1.0
3,513,236	+				-1.8
3,513,236	+				-1.0
3,513,236	+				+0.6
3,513,236	+				-1.1
3,513,237	-				-1.1
3,513,237	-				-1.2
3,513,237	-				-1.3
3,513,237	-				-1.3
3,513,237	-				+2.8
3,513,240	+				+0.4
3,513,240	+				-0.1
3,513,241	-				-0.9
3,513,241	-				+1.0
3,513,241	-				-0.8
3,513,241	-				+1.1
3,513,241	-				-0.2
3,513,241	-				-0.3
3,513,245	+				+0.6
3,513,246	-				+1.1
3,513,249	-				-0.3
3,513,249	-				-1.2
3,513,249	-				-0.2
3,513,249	-				-1.9
3,513,249	-				-1.0
3,513,343	+				-1.7
3,513,343	+				-0.7
3,513,344	-				-0.2
3,513,344	-				-1.2
3,513,379	+		DDA3937_RS15300	0.17	-0.9
3,513,380	-		DDA3937_RS15300	0.17	-0.1
3,513,380	-		DDA3937_RS15300	0.17	+0.8
3,513,380	-		DDA3937_RS15300	0.17	-0.9
3,513,389	+		DDA3937_RS15300	0.20	+1.2
3,513,449	-		DDA3937_RS15300	0.34	-0.7
3,513,449	-		DDA3937_RS15300	0.34	-0.8
3,513,452	+		DDA3937_RS15300	0.35	+2.6
3,513,453	-		DDA3937_RS15300	0.35	-1.8
3,513,453	-		DDA3937_RS15300	0.35	-1.2
3,513,457	+		DDA3937_RS15300	0.36	-0.8
3,513,491	-		DDA3937_RS15300	0.45	-0.6
3,513,491	-		DDA3937_RS15300	0.45	-0.2
3,513,520	+		DDA3937_RS15300	0.52	-1.3
3,513,520	+		DDA3937_RS15300	0.52	+6.6
3,513,520	+		DDA3937_RS15300	0.52	+1.6
3,513,520	+		DDA3937_RS15300	0.52	+1.4
3,513,521	-		DDA3937_RS15300	0.52	-1.1
3,513,529	+		DDA3937_RS15300	0.54	-0.7
3,513,554	+		DDA3937_RS15300	0.60	-0.9
3,513,554	+		DDA3937_RS15300	0.60	-0.2
3,513,555	-		DDA3937_RS15300	0.60	+0.3
3,513,555	-		DDA3937_RS15300	0.60	-0.7
3,513,555	-		DDA3937_RS15300	0.60	-1.1
3,513,555	-		DDA3937_RS15300	0.60	+1.2
3,513,555	-		DDA3937_RS15300	0.60	-0.4
3,513,555	-		DDA3937_RS15300	0.60	-0.1
3,513,556	+		DDA3937_RS15300	0.61	+0.2
3,513,556	+		DDA3937_RS15300	0.61	+0.8
3,513,556	+		DDA3937_RS15300	0.61	+1.3
3,513,556	+		DDA3937_RS15300	0.61	-1.4
3,513,557	-		DDA3937_RS15300	0.61	-0.5
3,513,557	-		DDA3937_RS15300	0.61	+0.5
3,513,557	-		DDA3937_RS15300	0.61	-0.2
3,513,557	-		DDA3937_RS15300	0.61	-1.0
3,513,557	-		DDA3937_RS15300	0.61	+1.3
3,513,557	-		DDA3937_RS15300	0.61	-0.4
3,513,557	-		DDA3937_RS15300	0.61	-0.5
3,513,557	-		DDA3937_RS15300	0.61	-1.8
3,513,557	-		DDA3937_RS15300	0.61	-1.6
3,513,557	-		DDA3937_RS15300	0.61	-0.8
3,513,557	-		DDA3937_RS15300	0.61	+1.1
3,513,557	-		DDA3937_RS15300	0.61	-0.9
3,513,588	+		DDA3937_RS15300	0.68	-1.1
3,513,589	-		DDA3937_RS15300	0.69	+0.2
3,513,666	+		DDA3937_RS15300	0.88	+0.2
3,513,666	+		DDA3937_RS15300	0.88	+3.3
3,513,734	+				+0.5
3,513,734	+				-1.5
3,513,734	+				-0.1
3,513,734	+				-0.6
3,513,734	+				+0.3
3,513,734	+				-0.6
3,513,735	-				-2.0
3,513,735	-				-2.2
3,513,735	-				-0.4
3,513,753	-				+0.2
3,513,847	+				+0.8
3,513,847	+				-0.4
3,513,893	+				+1.1
3,513,894	-				+0.6
3,513,900	+				-0.0
3,513,900	+				+1.2
3,513,934	+				-0.2
3,513,935	-				-0.8
3,514,094	+				-0.2
3,514,094	+				-0.1
3,514,094	+				+0.2
3,514,095	-				+2.0
3,514,095	-				-1.1
3,514,095	-				-0.3
3,514,238	-		DDA3937_RS15305	0.28	-2.7
3,514,295	+		DDA3937_RS15305	0.35	-0.7
3,514,296	-		DDA3937_RS15305	0.35	-0.8
3,514,350	-		DDA3937_RS15305	0.42	+0.6
3,514,555	-		DDA3937_RS15305	0.68	-0.9
3,514,769	-				-1.4
3,514,898	+				+0.1
3,514,898	+				-1.6
3,514,936	+				-1.6
3,515,033	+				-0.4
3,515,033	+				-1.3
3,515,034	-				+1.6
3,515,034	-				-0.0
3,515,040	-				-0.5
3,515,063	+				+0.1
3,515,063	+				-0.5
3,515,099	+				+0.2
3,515,100	-				-1.1
3,515,100	-				-0.6
3,515,370	+		DDA3937_RS15310	0.28	+0.2
3,515,370	+		DDA3937_RS15310	0.28	+0.2
3,515,371	-		DDA3937_RS15310	0.28	-0.4
3,515,382	+		DDA3937_RS15310	0.29	-0.7
3,515,382	+		DDA3937_RS15310	0.29	-1.2
3,515,382	+		DDA3937_RS15310	0.29	-0.0
3,515,382	+		DDA3937_RS15310	0.29	-0.9
3,515,383	-		DDA3937_RS15310	0.29	-0.5
3,515,383	-		DDA3937_RS15310	0.29	+0.4
3,515,383	-		DDA3937_RS15310	0.29	-1.9
3,515,383	-		DDA3937_RS15310	0.29	-2.3
3,515,579	+		DDA3937_RS15310	0.45	-0.0
3,515,597	+		DDA3937_RS15310	0.46	+0.3
3,515,729	+		DDA3937_RS15310	0.57	-0.6
3,515,730	-		DDA3937_RS15310	0.57	-0.7
3,515,730	-		DDA3937_RS15310	0.57	-1.1
3,515,733	+		DDA3937_RS15310	0.57	+1.0
3,515,733	+		DDA3937_RS15310	0.57	-1.6
3,515,733	+		DDA3937_RS15310	0.57	+0.2
3,515,733	+		DDA3937_RS15310	0.57	-0.1
3,515,733	+		DDA3937_RS15310	0.57	-0.2
3,515,733	+		DDA3937_RS15310	0.57	+2.2
3,515,733	+		DDA3937_RS15310	0.57	-0.2
3,515,733	+		DDA3937_RS15310	0.57	-0.3
3,515,733	+		DDA3937_RS15310	0.57	+0.5
3,515,733	+		DDA3937_RS15310	0.57	-0.3
3,515,733	+		DDA3937_RS15310	0.57	+1.2
3,515,733	+		DDA3937_RS15310	0.57	+0.8
3,515,734	-		DDA3937_RS15310	0.57	+0.3
3,515,734	-		DDA3937_RS15310	0.57	-1.4
3,515,734	-		DDA3937_RS15310	0.57	-0.8
3,515,734	-		DDA3937_RS15310	0.57	-1.2
3,515,734	-		DDA3937_RS15310	0.57	+0.7
3,515,734	-		DDA3937_RS15310	0.57	-0.4
3,515,734	-		DDA3937_RS15310	0.57	-0.2
3,515,734	-		DDA3937_RS15310	0.57	+0.6
3,515,734	-		DDA3937_RS15310	0.57	-0.5
3,515,734	-		DDA3937_RS15310	0.57	+0.8
3,515,734	-		DDA3937_RS15310	0.57	-1.4
3,515,734	-		DDA3937_RS15310	0.57	+0.4
3,515,734	-		DDA3937_RS15310	0.57	-1.0
3,515,736	+				+0.6
3,515,736	+		DDA3937_RS15310	0.57	-0.6
3,515,736	+		DDA3937_RS15310	0.57	-0.8
3,515,736	+		DDA3937_RS15310	0.57	-0.1
3,515,737	-		DDA3937_RS15310	0.58	-0.7
3,515,737	-		DDA3937_RS15310	0.58	-0.0
3,515,737	-		DDA3937_RS15310	0.58	-0.6
3,515,742	+		DDA3937_RS15310	0.58	-1.2
3,515,742	+		DDA3937_RS15310	0.58	+1.6
3,515,743	-		DDA3937_RS15310	0.58	-0.4