Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS14180

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,247,880	+				-0.4
3,247,880	+				-1.1
3,247,880	+				-0.8
3,247,880	+				-0.4
3,247,881	-				+0.9
3,247,881	-				-0.4
3,247,910	+				-1.1
3,247,910	+				-0.5
3,247,910	+				-1.1
3,247,910	+				-0.9
3,247,910	+				-1.1
3,247,911	-				+1.0
3,247,911	-				-1.1
3,247,911	-				+0.5
3,247,945	+				-1.4
3,247,945	+				-0.4
3,247,950	+				+0.1
3,247,950	+				-1.1
3,247,950	+				-2.6
3,247,950	+				-0.9
3,247,950	+				+0.7
3,247,951	-				+0.1
3,247,952	+				-0.6
3,248,032	+				-0.7
3,248,033	-				+1.1
3,248,033	-				-2.0
3,248,033	-				+0.6
3,248,096	+				-1.2
3,248,096	+				+0.5
3,248,096	+				-1.0
3,248,096	+				-0.1
3,248,096	+				-1.5
3,248,096	+				+1.1
3,248,096	+				+0.4
3,248,097	-				+0.2
3,248,097	-				-1.0
3,248,097	-				-0.9
3,248,097	-				-0.4
3,248,099	-				+0.1
3,248,107	+				-1.5
3,248,107	+				+0.2
3,248,148	+				-0.1
3,248,153	-				-0.2
3,248,158	-				+0.3
3,248,159	+				-0.1
3,248,159	+				-1.7
3,248,159	+				+1.5
3,248,159	+				-1.0
3,248,160	-				-2.5
3,248,160	-				+0.2
3,248,160	-				-0.0
3,248,160	-				+3.3
3,248,160	-				+0.3
3,248,166	+				+1.5
3,248,166	+				+0.5
3,248,167	-				-3.2
3,248,167	-				+0.1
3,248,167	-				-1.7
3,248,167	-				-0.8
3,248,167	-				-1.2
3,248,170	+				-1.9
3,248,170	+				+0.1
3,248,171	-				-0.9
3,248,171	-				-1.8
3,248,236	+				-1.5
3,248,236	+				-1.7
3,248,236	+				-2.0
3,248,236	+				-0.4
3,248,237	-				+1.0
3,248,237	-				+1.5
3,248,237	-				+0.1
3,248,240	+				-1.4
3,248,240	+				-0.9
3,248,240	+				-2.0
3,248,240	+				-1.8
3,248,240	+				+2.3
3,248,240	+				+0.0
3,248,240	+				+1.0
3,248,240	+				-0.6
3,248,240	+				-2.1
3,248,240	+				-2.1
3,248,241	-				+1.5
3,248,241	-				-2.1
3,248,241	-				-0.5
3,248,241	-				-1.4
3,248,241	-				+0.6
3,248,241	-				-1.7
3,248,241	-				-0.5
3,248,241	-				-0.1
3,248,241	-				-0.8
3,248,241	-				-0.5
3,248,241	-				+2.9
3,248,244	-				-1.4
3,248,244	-				+1.5
3,248,271	+				-3.2
3,248,276	-				-0.1
3,248,308	+				-1.1
3,248,309	-				-1.4
3,248,310	+				-0.9
3,248,311	-				-0.3
3,248,311	-				-1.4
3,248,311	-				-1.7
3,248,311	-				+0.7
3,248,311	-				-0.5
3,248,327	-				-0.7
3,248,332	+				-0.4
3,248,332	+				-0.0
3,248,333	-				-0.1
3,248,333	-				+0.1
3,248,366	-				+0.1
3,248,375	+				-0.1
3,248,376	-				+1.6
3,248,376	-				-1.0
3,248,440	-				-0.0
3,248,440	-				+1.1
3,248,454	+				-0.2
3,248,515	-				-0.7
3,248,558	+				+0.5
3,248,684	+				-0.7
3,248,744	-				-1.2
3,248,791	+				-0.4
3,248,791	+				-1.4
3,248,800	+				+1.5
3,248,802	+				-0.7
3,248,802	+				-0.7
3,248,802	+				-0.7
3,248,802	+				-0.5
3,248,802	+				+0.0
3,248,804	+				-0.5
3,248,804	+				+0.6
3,248,804	+				-0.5
3,248,804	+				-0.5
3,249,030	+		DDA3937_RS14180	0.12	-0.1
3,249,030	+		DDA3937_RS14180	0.12	-1.7
3,249,031	-		DDA3937_RS14180	0.12	-2.2
3,249,043	+		DDA3937_RS14180	0.13	+1.5
3,249,043	+		DDA3937_RS14180	0.13	-0.4
3,249,043	+		DDA3937_RS14180	0.13	-0.6
3,249,043	+		DDA3937_RS14180	0.13	-1.2
3,249,044	-		DDA3937_RS14180	0.13	+0.1
3,249,044	-		DDA3937_RS14180	0.13	-0.6
3,249,044	-		DDA3937_RS14180	0.13	-0.7
3,249,044	-		DDA3937_RS14180	0.13	+0.0
3,249,044	-		DDA3937_RS14180	0.13	-0.5
3,249,044	-		DDA3937_RS14180	0.13	-2.1
3,249,044	-		DDA3937_RS14180	0.13	+0.5
3,249,078	+		DDA3937_RS14180	0.15	-2.4
3,249,078	+		DDA3937_RS14180	0.15	+2.8
3,249,096	+		DDA3937_RS14180	0.17	-1.4
3,249,096	+		DDA3937_RS14180	0.17	-0.5
3,249,096	+		DDA3937_RS14180	0.17	+0.7
3,249,097	-		DDA3937_RS14180	0.17	+0.2
3,249,097	-		DDA3937_RS14180	0.17	-2.6
3,249,097	-				+0.5
3,249,097	-		DDA3937_RS14180	0.17	-0.3
3,249,100	+		DDA3937_RS14180	0.17	-1.8
3,249,138	+		DDA3937_RS14180	0.20	+0.2
3,249,138	+		DDA3937_RS14180	0.20	-2.0
3,249,138	+		DDA3937_RS14180	0.20	-1.3
3,249,138	+		DDA3937_RS14180	0.20	-0.1
3,249,139	-		DDA3937_RS14180	0.20	-0.4
3,249,139	-		DDA3937_RS14180	0.20	-1.1
3,249,139	-		DDA3937_RS14180	0.20	+0.0
3,249,195	+		DDA3937_RS14180	0.24	+0.6
3,249,196	-		DDA3937_RS14180	0.24	+0.5
3,249,196	-		DDA3937_RS14180	0.24	-1.9
3,249,263	+		DDA3937_RS14180	0.28	-0.5
3,249,280	+		DDA3937_RS14180	0.30	+0.5
3,249,281	-		DDA3937_RS14180	0.30	-0.2
3,249,363	-		DDA3937_RS14180	0.36	-0.3
3,249,363	-		DDA3937_RS14180	0.36	+3.4
3,249,417	+		DDA3937_RS14180	0.39	-0.9
3,249,418	-		DDA3937_RS14180	0.39	+1.5
3,249,459	+		DDA3937_RS14180	0.42	-0.6
3,249,460	-		DDA3937_RS14180	0.42	+0.5
3,249,669	+		DDA3937_RS14180	0.57	-0.0
3,249,696	+		DDA3937_RS14180	0.59	-0.5
3,249,696	+		DDA3937_RS14180	0.59	-0.4
3,249,696	+		DDA3937_RS14180	0.59	+3.2
3,249,696	+		DDA3937_RS14180	0.59	+0.9
3,249,696	+		DDA3937_RS14180	0.59	-0.4
3,249,696	+		DDA3937_RS14180	0.59	+2.5
3,249,696	+		DDA3937_RS14180	0.59	-2.2
3,249,696	+				+0.7
3,249,696	+		DDA3937_RS14180	0.59	-0.2
3,249,696	+		DDA3937_RS14180	0.59	-1.5
3,249,696	+		DDA3937_RS14180	0.59	-1.1
3,249,697	-		DDA3937_RS14180	0.59	+1.9
3,249,697	-		DDA3937_RS14180	0.59	+2.5
3,249,697	-		DDA3937_RS14180	0.59	+1.0
3,249,697	-		DDA3937_RS14180	0.59	-1.4
3,249,874	+		DDA3937_RS14180	0.71	-0.9
3,249,998	-		DDA3937_RS14180	0.80	-2.2
3,250,086	+		DDA3937_RS14180	0.86	+0.2
3,250,089	+		DDA3937_RS14180	0.87	+1.7
3,250,140	+				-0.0
3,250,443	+		DDA3937_RS14185	0.21	+0.5
3,250,444	-		DDA3937_RS14185	0.21	-0.8
3,250,444	-		DDA3937_RS14185	0.21	+0.9
3,250,452	+		DDA3937_RS14185	0.22	-0.1
3,250,452	+		DDA3937_RS14185	0.22	+1.4
3,250,453	-		DDA3937_RS14185	0.22	+0.0
3,250,453	-		DDA3937_RS14185	0.22	+0.8
3,250,453	-		DDA3937_RS14185	0.22	+1.5
3,250,692	-		DDA3937_RS14185	0.55	-0.5
3,250,692	-		DDA3937_RS14185	0.55	-1.5
3,250,692	-		DDA3937_RS14185	0.55	+0.2
3,251,016	+				-0.5
3,251,017	-				+1.2
3,251,063	+				-0.9
3,251,064	-				+0.4
3,251,096	-				+1.5
3,251,120	+				+0.7
3,251,121	-				-0.7
3,251,185	-				+0.7
3,251,190	+				-0.1
3,251,196	+		DDA3937_RS14190	0.12	-1.0
3,251,197	-		DDA3937_RS14190	0.12	-0.1